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  1. Article ; Online: Chemical Synthesis of Oligonucelotide Sequences: Phosphoramidite Chemistry.

    Brazier, John

    Methods in molecular biology (Clifton, N.J.)

    2023  Volume 2633, Page(s) 185–193

    Abstract: Oligonucleotides are used in a variety of molecular biology techniques, from next-generation sequencing to genetic testing. Maintaining the sequence fidelity of synthetic oligonucleotides is critical to their use. This chapter describes the steps of ... ...

    Abstract Oligonucleotides are used in a variety of molecular biology techniques, from next-generation sequencing to genetic testing. Maintaining the sequence fidelity of synthetic oligonucleotides is critical to their use. This chapter describes the steps of solid phase oligonucleotide synthesis and purification, which enables the synthesis of oligonucleotides with specific sequences and high purity.
    MeSH term(s) Genetic Testing ; High-Throughput Nucleotide Sequencing ; Oligonucleotides/genetics ; Organophosphorus Compounds
    Chemical Substances phosphoramidite ; Oligonucleotides ; Organophosphorus Compounds
    Language English
    Publishing date 2023-02-28
    Publishing country United States
    Document type Journal Article
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-0716-3004-4_14
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Exploring health preference heterogeneity in the UK: Using the online elicitation of personal utility functions approach to construct EQ-5D-5L value functions on societal, group and individual level.

    Schneider, Paul / Devlin, Nancy / van Hout, Ben / Brazier, John

    Health economics

    2024  Volume 33, Issue 5, Page(s) 894–910

    Abstract: A new method has recently been developed for valuing health states, called 'Online elicitation of Personal Utility Functions' (OPUF). In contrast to established methods, such as time trade-off or discrete choice experiments, OPUF does not require ... ...

    Abstract A new method has recently been developed for valuing health states, called 'Online elicitation of Personal Utility Functions' (OPUF). In contrast to established methods, such as time trade-off or discrete choice experiments, OPUF does not require hundreds of respondents, but allows estimating utility functions for small groups and even at the individual level. In this study, we used OPUF to elicit EQ-5D-5L health state preferences from a (not representative) sample of the UK general population, and then compared utility functions on the societal-, group-, and individual level. A demo version of the survey is available at: https://eq5d5l.me. Data from 874 respondents were included in the analysis. For each respondent, we constructed a personal EQ-5D-5L value set. These personal value sets predicted respondents' choices in three hold-out discrete choice tasks with an accuracy of 78%. Overall, preferences varied greatly between individuals. However, PERMANOVA analysis showed that demographic characteristics explained only a small proportion of the variability between subgroups. While OPUF is still under development, it has important strengths: it can be used to construct value sets for patient reported outcome instruments such as EQ-5D-5L, while also allowing examination of underlying preferences in an unprecedented level of detail. In the future, OPUF could be used to complement existing methods, allowing valuation studies in smaller samples, and providing more detailed insights into the heterogeneity of preferences across subgroups.
    MeSH term(s) Humans ; Health Status ; Quality of Life ; Surveys and Questionnaires ; United Kingdom
    Language English
    Publishing date 2024-01-20
    Publishing country England
    Document type Journal Article
    ZDB-ID 1135838-5
    ISSN 1099-1050 ; 1057-9230
    ISSN (online) 1099-1050
    ISSN 1057-9230
    DOI 10.1002/hec.4805
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Development and Valuation of a Preference-Weighted Measure in Age-Related Macular Degeneration From the Vision Impairment in Low Luminance Questionnaire-A MACUSTAR Report.

    Rowen, Donna / Carlton, Jill / Terheyden, Jan H / Finger, Robert P / Wickramasekera, Nyantara / Brazier, John

    Value in health : the journal of the International Society for Pharmacoeconomics and Outcomes Research

    2024  

    Abstract: Objectives: This study generates VILL-UI (Vision Impairment in Low Luminance - Utility Index), a preference-weighted measure (PWM) derived from the VILL-33 measure for use in patients with age-related macular degeneration (AMD) and valued to generate ... ...

    Abstract Objectives: This study generates VILL-UI (Vision Impairment in Low Luminance - Utility Index), a preference-weighted measure (PWM) derived from the VILL-33 measure for use in patients with age-related macular degeneration (AMD) and valued to generate United Kingdom and German preference weights.
    Methods: A PWM consists of a classification system to describe health and utility values for every state described by the classification. The classification was derived using existing data collected as part of the MACUSTAR study, a low-interventional study on AMD, conducted at 20 clinical sites across Europe. Items were selected using psychometric and Rasch analyses, published criteria around PWM suitability, alongside instrument developer views and concept elicitation work that informed VILL-33 development. An online discrete choice experiment (DCE) with duration of the health state was conducted with the United Kingdom and German public. Responses were modeled to generate utility values for all possible health states.
    Results: The classification system has 5 items across the 3 domains of VILL-33: reading and accessing information, mobility and safety, and emotional well-being. The DCE samples (United Kingdom: n = 1004, Germany: n = 1008) are broadly representative and demonstrate good understanding of the tasks. The final DCE analyses produce logically consistent and significant coefficients.
    Conclusions: This study enables responses to VILL-33 to be directly used to inform economic evaluation in AMD. The elicitation of preferences from both United Kingdom and Germany enables greater application of VILL-UI for economic evaluation throughout Europe. VILL-UI fills a gap in AMD in which generic preference-weighted measures typically lack sensitivity.
    Language English
    Publishing date 2024-02-17
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1471745-1
    ISSN 1524-4733 ; 1098-3015
    ISSN (online) 1524-4733
    ISSN 1098-3015
    DOI 10.1016/j.jval.2024.02.001
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Acalculous variant of Mirizzi syndrome: Imaging and clinical characteristics.

    Figacz, Alexander / Brazier, Allan / Brazier, Joseph / Jamil, Laith H / Nandalur, Kiran / Al-Katib, Sayf

    Clinical imaging

    2022  Volume 94, Page(s) 62–70

    Abstract: Purpose: Mirizzi Syndrome is a rare disease that causes biliary obstruction in the setting of an impacted stone in the gallbladder neck or Hartmann's Pouch which exerts mass effect on the common duct; however, we have noticed inflammatory biliary ... ...

    Abstract Purpose: Mirizzi Syndrome is a rare disease that causes biliary obstruction in the setting of an impacted stone in the gallbladder neck or Hartmann's Pouch which exerts mass effect on the common duct; however, we have noticed inflammatory biliary narrowing in the absence of an offending gallstone in the setting of acute cholecystitis. The purpose of this study is to report the clinical and MRCP findings in a series of 10 patients with this variant of Mirizzi Syndrome.
    Materials and methods: A search of our institution's PACS and electronic medical record identified 10 patients with a diagnosis of acute cholecystitis and narrowing of the common duct on imaging in the absence of an impacted gallstone. Imaging and clinical findings were confirmed by two board-certified abdominal radiologists.
    Results: All patients presented with abdominal pain and an average elevated total bilirubin of 3.0 mg/dL. Seven patients had MRCP findings of complete narrowing of the CBD. Nine patients had intrahepatic biliary ductal dilation. All nine patients with gadoliniumenhanced MRCP displayed biliary wall thickening with enhancement adjacent to the gallbladder. Nine patients underwent cholecystectomy, one patient underwent percutaneous cholecystostomy. Average bilirubin upon discharge was within normal limits at 0.9 mg/dL after intervention. Two patients had follow-up MRCP showing resolution of biliary narrowing.
    Conclusion: A variant of Mirizzi Syndrome occurs in the absence of an offending gallstone in the gallbladder neck or cystic duct to explain the biliary narrowing. We postulate that acute cholecystitis can cause a local inflammatory narrowing resulting in biliary obstruction.
    Language English
    Publishing date 2022-12-02
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1028123-x
    ISSN 1873-4499 ; 0899-7071
    ISSN (online) 1873-4499
    ISSN 0899-7071
    DOI 10.1016/j.clinimag.2022.11.017
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: All models are wrong, but the critical power model is useful.

    Muniz-Pumares, Daniel / Maunder, Ed / Brazier, Jon / Hunter, Ben

    European journal of applied physiology

    2023  Volume 124, Issue 2, Page(s) 669–670

    Language English
    Publishing date 2023-11-17
    Publishing country Germany
    Document type Letter
    ZDB-ID 124793-1
    ISSN 1439-6327 ; 1432-1025 ; 0301-5548 ; 1439-6319
    ISSN (online) 1439-6327 ; 1432-1025
    ISSN 0301-5548 ; 1439-6319
    DOI 10.1007/s00421-023-05359-1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Rapid, repeatable landscape-scale mapping of tree, hedgerow, and woodland habitats (THaW), using airborne LiDAR and spaceborne SAR data.

    Luscombe, David J / Gatis, Naomi / Anderson, Karen / Carless, Donna / Brazier, Richard E

    Ecology and evolution

    2023  Volume 13, Issue 5, Page(s) e10103

    Abstract: In the UK, tree, hedgerow, and woodland (THaW) habitats are key havens for biodiversity and support many related ecosystem services. The UK is entering a period of agricultural policy realignment with respect to natural capital and climate change, ... ...

    Abstract In the UK, tree, hedgerow, and woodland (THaW) habitats are key havens for biodiversity and support many related ecosystem services. The UK is entering a period of agricultural policy realignment with respect to natural capital and climate change, meaning that now is a critical time to evaluate the distribution, resilience, and dynamics of THaW habitats. The fine-grained nature of habitats like hedgerows necessitates mapping of these features at relatively fine spatial resolution-and freely available public archives of airborne laser scanning (LiDAR) data at <2 m spatial resolution offer a means of doing so within UK settings. The high cost of LiDAR prohibits use for regular monitoring of THaW change, but space-borne sensors such as Sentinel-1 Synthetic Aperture Radar (SAR at ca. 10 m resolution) can potentially meet this need once baseline distributions are established. We address two aims in this manuscript-(1) to rapidly quantify THaW across UK landscapes using LiDAR data and (2) to monitor canopy change intra- and inter-annually using SAR data. We show that workflows applied to airborne LiDAR data can deliver THaW baselines at 2 m resolution, with positional accuracy of >90%. It was also possible to combine LiDAR mapping data and Sentinel-1 SAR data to rapidly track canopy change through time (i.e., every 3 months) using, cloud-based processing via Google Earth Engine. The resultant toolkit is also provided as an open-access web app. The results highlight that whilst nearly 90% of the tallest trees (above 15 m) are captured within the National Forest Inventory (NFI) database only 50% of THaW with a canopy height range of 3-15 m are recorded. Current estimates of tree distribution neglect these finer-grained features (i.e., smaller or less contiguous THaW canopies), which we argue will account for a significant proportion of landscape THaW cover.
    Language English
    Publishing date 2023-05-25
    Publishing country England
    Document type Journal Article
    ZDB-ID 2635675-2
    ISSN 2045-7758
    ISSN 2045-7758
    DOI 10.1002/ece3.10103
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Current Perspectives on the Assessment and Management of Gait Disorders in Parkinson's Disease.

    Smith, Matthew D / Brazier, Danielle E / Henderson, Emily J

    Neuropsychiatric disease and treatment

    2021  Volume 17, Page(s) 2965–2985

    Abstract: Gait dysfunction is a key defining feature of Parkinson's disease (PD), and is associated with symptoms of freezing and an increased risk of falls. In this narrative review, we cover the putative mechanisms of gait dysfunction in PD, the assessment of ... ...

    Abstract Gait dysfunction is a key defining feature of Parkinson's disease (PD), and is associated with symptoms of freezing and an increased risk of falls. In this narrative review, we cover the putative mechanisms of gait dysfunction in PD, the assessment of gait abnormalities, and the management of symptoms caused by the inherent difficulty in walking. Our understanding of the causes of gait problems in PD has progressed in recent times, moving from neurocognitive theory to correlates of affected neuronal pathways. In particular, this can be shown to correspond with abnormalities in responses to dual-task paradigms and dysfunction in cholinergic signaling. Great progress has been made in the sophistication and precision of gait assessment; however, it has firmly remained in the research domain. There is significant momentum behind wearable technologies that can be used by patients in their own environment, acting as digital biomarkers that can not only reflect progression but also independently discriminate PD from non-PD individuals. The treatment of gait dysfunction has historically relied on physical therapies and training combined with a view to mitigating the impact of such consequences as falls. Pharmacological therapies that are the mainstay of treatment in PD have tended to address symptoms like bradykinesia; however, optimization of dopaminergic therapies likely has a positive effect on quality of gait. Other targets have been assessed with the goal of improving gait, of which medications that improve cholinergic signaling appear most promising. Neuromodulation techniques are increasingly used in the form of deep-brain stimulation; however, standard targets, such as the globus pallidus interna, have a modest effect on gait. Considerable benefit has been seen through targeting the pedunculopontine nucleus, and a dual-target approach may be warranted. Stimulation of the spinal cord and brain through direct or magnetic approaches has been assessed, but requires further evidence.
    Language English
    Publishing date 2021-09-21
    Publishing country New Zealand
    Document type Journal Article ; Review
    ZDB-ID 2186503-6
    ISSN 1178-2021 ; 1176-6328
    ISSN (online) 1178-2021
    ISSN 1176-6328
    DOI 10.2147/NDT.S304567
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Turner’s 1836 Alpine Crossing and the Little Ice Age Portrayed in Val Veny and Val Ferret; a Geography of the Sublime

    Martin P. Kirkbride / Susan P. Mains / Vanessa Brazier

    Revue de Géographie Alpine, Vol 111, Iss

    2023  Volume 2

    Abstract: The English artist J.M.W. Turner made his second visit to upper Val d’Aosta in 1836, after ...

    Abstract The English artist J.M.W. Turner made his second visit to upper Val d’Aosta in 1836, after which he produced several significant paintings. Here, we accurately locate two of these works and relate them to the climatic and geomorphological environment of the time. We combine critical geomorphological and cultural geographic analyses to derive a more holistic appraisal of Turner’s artistic motivations and methods in his Alpine works. The first is a watercolour of Mont Rouge de Peuterey from across the Glacier du Miage. The second is a major oil painting re-imagining of the 1717 Triolet disaster which conflates the complex geomorphological processes of this rock-ice avalanche and subsequent outburst flood into a single dramatic scene. Turner’s visit coincided with the mid-nineteenth century maximum advance of glaciers in the region allowing him to witness dynamic geomorphological processes in close proximity. The precise viewpoints of these scenes demonstrate that Turner spent some time in the area to seek out preferred locations and that he was aware of considerable details of local history. The paintings speak of an immersion in the environment of the time, and their study yields fruitful insights into the complex relationships between geography and landscape art.
    Keywords J.M.W. Turner ; Landscape painting ; Val d’Aosta ; Little Ice Age ; Triolet rock avalanche ; Geography. Anthropology. Recreation ; G ; Physical geography ; GB3-5030
    Subject code 910
    Language English
    Publishing date 2023-11-01T00:00:00Z
    Publisher Institut de Géographie Alpine
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: La traversée alpine de Turner en 1836 et le petit âge glaciaire dépeints dans le Val Veny et le Val Ferret (massif du Mont-Blanc)

    Martin P. Kirkbride / Susan P. Mains / Vanessa Brazier

    Revue de Géographie Alpine, Vol 111, Iss

    2023  Volume 2

    Abstract: L’artiste anglais J.M.W. Turner (1775-1851) a réalisé sa deuxième visite dans le haut Val d’Aoste en 1836. Elle lui inspira plusieurs tableaux importants. Ici, nous localisons avec précision deux de ces œuvres et les relions à l’environnement climatique ... ...

    Abstract L’artiste anglais J.M.W. Turner (1775-1851) a réalisé sa deuxième visite dans le haut Val d’Aoste en 1836. Elle lui inspira plusieurs tableaux importants. Ici, nous localisons avec précision deux de ces œuvres et les relions à l’environnement climatique et géomorphologique de l’époque. Nous combinons des analyses géomorphologiques et géographiques culturelles pour proposer une évaluation plus holistique des motivations artistiques et des méthodes de Turner dans ses œuvres alpines. La première œuvre est une aquarelle présentant le mont Rouge de Peuterey (2941 m) à proximité du glacier du Miage (Val Veny). La seconde est une peinture à l’huile majeure interprétant la catastrophe du Triolet (3870 m) de 1717 (Val Ferret). Pour cette dernière, l’artiste a combiné en une seule scène dramatique les processus géomorphologiques complexes que sont une avalanche rocheuse impliquant également de la glace et l’inondation qui a suivi. La visite de Turner dans la région a coïncidé avec l’avancée maximale des glaciers au milieu du xixe siècle, ce qui lui a permis d’être confronté à des processus géomorphologiques d’ampleur. Les points de vue précis de ces deux scènes, déterminés ici pour la première fois, montrent que Turner a passé un certain temps dans la région pour rechercher les endroits les plus favorables et qu’il connaissait certains éléments importants de l’histoire locale. Les peintures font état d’une immersion dans l’environnement de l’époque, et leur étude donne un aperçu fructueux des relations complexes qui existent entre la géographie et l’art du paysage en montagne.
    Keywords J.M.W. Turner ; peinture de paysage ; Val d’Aoste ; Petit âge glaciaire ; avalanche rocheuse du Triolet ; Geography. Anthropology. Recreation ; G ; Physical geography ; GB3-5030
    Language English
    Publishing date 2023-11-01T00:00:00Z
    Publisher Institut de Géographie Alpine
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article ; Online: Valuing SF-6Dv2 in Australia Using an International Protocol.

    Mulhern, Brendan / Norman, Richard / Brazier, John

    PharmacoEconomics

    2021  Volume 39, Issue 10, Page(s) 1151–1162

    Abstract: Background: The SF-6Dv2 is an updated version of the SF-6D, with improved consistency and dimension descriptors, and value sets are required. The aim of this study was to estimate an SF-6Dv2 value set for Australia using an international protocol, while ...

    Abstract Background: The SF-6Dv2 is an updated version of the SF-6D, with improved consistency and dimension descriptors, and value sets are required. The aim of this study was to estimate an SF-6Dv2 value set for Australia using an international protocol, while secondary aims were to compare Australian and UK values and to understand heterogeneity.
    Methods: The study design was based on the SF-6Dv2 valuation protocol, which involved the administration of two different discrete choice experiment (DCE) tasks. The first task presented pairs of SF-6Dv2 health states with duration (Design 1), and the second task presented triplets that appended 'immediate death' to the health state pairs (Design 2). Respondents completed 12 choice sets online (10 from Design 1; 2 from Design 2). Value sets were estimated for Design 1 separately and combining Designs 1 and 2 using a variety of logit model specifications. Value set characteristics were compared descriptively with the UK model.
    Results: The sample included 3001 Australians. A range of ordered and consistent models were estimated. The models only including Design 1 data resulted in a relatively wider utility range. The value range was reduced by an interaction added when the health state included a dimension with a severe level. The model matched with the UK value set resulted in a larger utility range and consistent ordering of the most important dimensions.
    Conclusion: The model including the Design 1 data and moderating interaction was chosen for the Australian value set. This allows the SF-6Dv2 to be used in health technology assessment decision making in Australia.
    MeSH term(s) Australia ; Health Status ; Humans ; Logistic Models ; Quality of Life ; Surveys and Questionnaires
    Language English
    Publishing date 2021-07-12
    Publishing country New Zealand
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1100273-6
    ISSN 1179-2027 ; 1170-7690
    ISSN (online) 1179-2027
    ISSN 1170-7690
    DOI 10.1007/s40273-021-01043-4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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