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  1. Article ; Online: Rich data sets could end costly drug discovery.

    Segal, Eran

    Nature

    2020  Volume 577, Issue 7792, Page(s) S19

    MeSH term(s) Algorithms ; Databases, Genetic ; Drug Discovery/economics ; Drug Discovery/trends ; Humans ; Machine Learning ; Microbiota/physiology ; Therapeutics/economics ; Therapeutics/trends
    Language English
    Publishing date 2020-01-29
    Publishing country England
    Document type News ; Comment
    ZDB-ID 120714-3
    ISSN 1476-4687 ; 0028-0836
    ISSN (online) 1476-4687
    ISSN 0028-0836
    DOI 10.1038/d41586-020-00200-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Endocrinology in the multi-omics era.

    Shilo, Smadar / Segal, Eran

    Nature reviews. Endocrinology

    2023  Volume 20, Issue 2, Page(s) 73–74

    MeSH term(s) Humans ; Multiomics ; Genomics ; Proteomics ; Endocrinology
    Language English
    Publishing date 2023-12-03
    Publishing country England
    Document type Journal Article
    ZDB-ID 2489381-X
    ISSN 1759-5037 ; 1759-5029
    ISSN (online) 1759-5037
    ISSN 1759-5029
    DOI 10.1038/s41574-023-00931-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Prediction of type 2 diabetes mellitus onset using logistic regression-based scorecards

    Yochai Edlitz / Eran Segal

    eLife, Vol

    2022  Volume 11

    Abstract: Background: Type 2 diabetes (T2D) accounts for ~90% of all cases of diabetes, resulting in an estimated 6.7 million deaths in 2021, according to the International Diabetes Federation. Early detection of patients with high risk of developing T2D can ... ...

    Abstract Background: Type 2 diabetes (T2D) accounts for ~90% of all cases of diabetes, resulting in an estimated 6.7 million deaths in 2021, according to the International Diabetes Federation. Early detection of patients with high risk of developing T2D can reduce the incidence of the disease through a change in lifestyle, diet, or medication. Since populations of lower socio-demographic status are more susceptible to T2D and might have limited resources or access to sophisticated computational resources, there is a need for accurate yet accessible prediction models. Methods: In this study, we analyzed data from 44,709 nondiabetic UK Biobank participants aged 40–69, predicting the risk of T2D onset within a selected time frame (mean of 7.3 years with an SD of 2.3 years). We started with 798 features that we identified as potential predictors for T2D onset. We first analyzed the data using gradient boosting decision trees, survival analysis, and logistic regression methods. We devised one nonlaboratory model accessible to the general population and one more precise yet simple model that utilizes laboratory tests. We simplified both models to an accessible scorecard form, tested the models on normoglycemic and prediabetes subcohorts, and compared the results to the results of the general cohort. We established the nonlaboratory model using the following covariates: sex, age, weight, height, waist size, hip circumference, waist-to-hip ratio, and body mass index. For the laboratory model, we used age and sex together with four common blood tests: high-density lipoprotein (HDL), gamma-glutamyl transferase, glycated hemoglobin, and triglycerides. As an external validation dataset, we used the electronic medical record database of Clalit Health Services. Results: The nonlaboratory scorecard model achieved an area under the receiver operating curve (auROC) of 0.81 (95% confidence interval [CI] 0.77–0.84) and an odds ratio (OR) between the upper and fifth prevalence deciles of 17.2 (95% CI 5–66). Using this model, we classified ...
    Keywords T2D ; diabetes ; T2DM ; prediction model ; scorecard ; risk model ; Medicine ; R ; Science ; Q ; Biology (General) ; QH301-705.5
    Subject code 310
    Language English
    Publishing date 2022-06-01T00:00:00Z
    Publisher eLife Sciences Publications Ltd
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: Prediction of type 2 diabetes mellitus onset using logistic regression-based scorecards.

    Edlitz, Yochai / Segal, Eran

    eLife

    2022  Volume 11

    Abstract: Background: Type 2 diabetes (T2D) accounts for ~90% of all cases of diabetes, resulting in an estimated 6.7 million deaths in 2021, according to the International Diabetes Federation. Early detection of patients with high risk of developing T2D can ... ...

    Abstract Background: Type 2 diabetes (T2D) accounts for ~90% of all cases of diabetes, resulting in an estimated 6.7 million deaths in 2021, according to the International Diabetes Federation. Early detection of patients with high risk of developing T2D can reduce the incidence of the disease through a change in lifestyle, diet, or medication. Since populations of lower socio-demographic status are more susceptible to T2D and might have limited resources or access to sophisticated computational resources, there is a need for accurate yet accessible prediction models.
    Methods: In this study, we analyzed data from 44,709 nondiabetic UK Biobank participants aged 40-69, predicting the risk of T2D onset within a selected time frame (mean of 7.3 years with an SD of 2.3 years). We started with 798 features that we identified as potential predictors for T2D onset. We first analyzed the data using gradient boosting decision trees, survival analysis, and logistic regression methods. We devised one nonlaboratory model accessible to the general population and one more precise yet simple model that utilizes laboratory tests. We simplified both models to an accessible scorecard form, tested the models on normoglycemic and prediabetes subcohorts, and compared the results to the results of the general cohort. We established the nonlaboratory model using the following covariates: sex, age, weight, height, waist size, hip circumference, waist-to-hip ratio, and body mass index. For the laboratory model, we used age and sex together with four common blood tests: high-density lipoprotein (HDL), gamma-glutamyl transferase, glycated hemoglobin, and triglycerides. As an external validation dataset, we used the electronic medical record database of Clalit Health Services.
    Results: The nonlaboratory scorecard model achieved an area under the receiver operating curve (auROC) of 0.81 (95% confidence interval [CI] 0.77-0.84) and an odds ratio (OR) between the upper and fifth prevalence deciles of 17.2 (95% CI 5-66). Using this model, we classified three risk groups, a group with 1% (0.8-1%), 5% (3-6%), and the third group with a 9% (7-12%) risk of developing T2D. We further analyzed the contribution of the laboratory-based model and devised a blood test model based on age, sex, and the four common blood tests noted above. In this scorecard model, we included age, sex, glycated hemoglobin (HbA1c%), gamma glutamyl-transferase, triglycerides, and HDL cholesterol. Using this model, we achieved an auROC of 0.87 (95% CI 0.85-0.90) and a deciles' OR of ×48 (95% CI 12-109). Using this model, we classified the cohort into four risk groups with the following risks: 0.5% (0.4-7%); 3% (2-4%); 10% (8-12%); and a high-risk group of 23% (10-37%) of developing T2D. When applying the blood tests model using the external validation cohort (Clalit), we achieved an auROC of 0.75 (95% CI 0.74-0.75). We analyzed several additional comprehensive models, which included genotyping data and other environmental factors. We found that these models did not provide cost-efficient benefits over the four blood test model. The commonly used German Diabetes Risk Score (GDRS) and Finnish Diabetes Risk Score (FINDRISC) models, trained using our data, achieved an auROC of 0.73 (0.69-0.76) and 0.66 (0.62-0.70), respectively, inferior to the results achieved by the four blood test model and by the anthropometry models.
    Conclusions: The four blood test and anthropometric models outperformed the commonly used nonlaboratory models, the FINDRISC and the GDRS. We suggest that our models be used as tools for decision-makers to assess populations at elevated T2D risk and thus improve medical strategies. These models might also provide a personal catalyst for changing lifestyle, diet, or medication modifications to lower the risk of T2D onset.
    Funding: The funders had no role in study design, data collection, interpretation, or the decision to submit the work for publication.
    MeSH term(s) Diabetes Mellitus, Type 2/diagnosis ; Diabetes Mellitus, Type 2/epidemiology ; Glycated Hemoglobin ; Humans ; Logistic Models ; Risk Factors ; Transferases ; Triglycerides
    Chemical Substances Glycated Hemoglobin A ; Triglycerides ; Transferases (EC 2.-)
    Language English
    Publishing date 2022-06-22
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2687154-3
    ISSN 2050-084X ; 2050-084X
    ISSN (online) 2050-084X
    ISSN 2050-084X
    DOI 10.7554/eLife.71862
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Recording bacterial responses to changes in the gut environment.

    Zahavi, Liron / Segal, Eran

    Science (New York, N.Y.)

    2022  Volume 376, Issue 6594, Page(s) 697–698

    Abstract: A CRISPR-based tool reveals intestinal microbiota gene expression through time. ...

    Abstract A CRISPR-based tool reveals intestinal microbiota gene expression through time.
    MeSH term(s) Animals ; Clustered Regularly Interspaced Short Palindromic Repeats ; Escherichia coli/genetics ; Gastrointestinal Microbiome/genetics ; Gene Expression ; Genetic Engineering/methods ; Mice ; Time Factors
    Language English
    Publishing date 2022-05-12
    Publishing country United States
    Document type Journal Article ; Comment
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.abq1455
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Wearable and digital devices to monitor and treat metabolic diseases.

    Keshet, Ayya / Reicher, Lee / Bar, Noam / Segal, Eran

    Nature metabolism

    2023  Volume 5, Issue 4, Page(s) 563–571

    Abstract: Cardiometabolic diseases are a major public-health concern owing to their increasing prevalence worldwide. These diseases are characterized by a high degree of interindividual variability with regards to symptoms, severity, complications and treatment ... ...

    Abstract Cardiometabolic diseases are a major public-health concern owing to their increasing prevalence worldwide. These diseases are characterized by a high degree of interindividual variability with regards to symptoms, severity, complications and treatment responsiveness. Recent technological advances, and the growing availability of wearable and digital devices, are now making it feasible to profile individuals in ever-increasing depth. Such technologies are able to profile multiple health-related outcomes, including molecular, clinical and lifestyle changes. Nowadays, wearable devices allowing for continuous and longitudinal health screening outside the clinic can be used to monitor health and metabolic status from healthy individuals to patients at different stages of disease. Here we present an overview of the wearable and digital devices that are most relevant for cardiometabolic-disease-related readouts, and how the information collected from such devices could help deepen our understanding of metabolic diseases, improve their diagnosis, identify early disease markers and contribute to individualization of treatment and prevention plans.
    MeSH term(s) Humans ; Cardiovascular System/physiopathology ; Continuous Glucose Monitoring ; Data Collection ; Fitness Trackers ; Life Style ; Metabolic Diseases/diagnosis ; Metabolic Diseases/physiopathology ; Metabolic Diseases/therapy ; Monitoring, Physiologic/instrumentation ; Monitoring, Physiologic/methods ; Polysomnography ; Time Factors ; Wearable Electronic Devices/trends
    Language English
    Publishing date 2023-04-26
    Publishing country Germany
    Document type Journal Article ; Review
    ISSN 2522-5812
    ISSN (online) 2522-5812
    DOI 10.1038/s42255-023-00778-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Nowcasting the spread of SARS-CoV-2.

    Rossman, Hagai / Segal, Eran

    Nature microbiology

    2021  Volume 7, Issue 1, Page(s) 16–17

    MeSH term(s) Basic Reproduction Number ; COVID-19/diagnosis ; COVID-19/epidemiology ; COVID-19/transmission ; Forecasting ; Humans ; Prevalence ; SARS-CoV-2/isolation & purification
    Language English
    Publishing date 2021-12-31
    Publishing country England
    Document type News
    ISSN 2058-5276
    ISSN (online) 2058-5276
    DOI 10.1038/s41564-021-01035-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Branch retinal vein occlusion treated with anti-VEGF: to switch or not to switch?

    Shor, Reut / Segal, Ori / Barequet, Dana / Greenbaum, Eran / Trivizki, Omer / Loewenstein, Anat / Rabina, Gilad

    Canadian journal of ophthalmology. Journal canadien d'ophtalmologie

    2024  

    Abstract: Objective: To evaluate visual outcomes after switching from bevacizumab to ranibizumab or aflibercept in patients with macular edema (ME) secondary to branch retinal vein occlusion (BRVO).: Design: A retrospective, multi-center, observational study.!# ...

    Abstract Objective: To evaluate visual outcomes after switching from bevacizumab to ranibizumab or aflibercept in patients with macular edema (ME) secondary to branch retinal vein occlusion (BRVO).
    Design: A retrospective, multi-center, observational study.
    Participants: Patients diagnosed with BRVO and were treated with at least 3 bevacizumab injections, before anti VEGF switch.
    Methods: The follow-up period was 36 months, and the primary study outcomes assessed changes in best corrected visual acuity (BCVA) after anti VEGF switch.
    Results: A total of 263 eyes of 263 patients with a mean age of 71.5 ± 11.2 years of which 50% were of male gender met the inclusion criteria. Of them, 175 eyes did not undergo switch, whereas 88 eyes underwent anti-VEGF switch. There was not a significant difference in mean age (p = 0.634) and gender (p = 0.269) between the groups. Baseline BCVA of the no-switch group was 0.47 ± 0.43 logMAR (20/59 Snellen) versus 0.6 ± 0.49 logMAR (20/79 Snellen) (p = 0.031) in the switch group, and at 36-months it was 0.41 ± 0.39 (20/51 Snellen) logMAR versus 0.54 ± 0.49 logMAR (20/69 Snellen) (p = 0.035), respectively. The difference between the rate of change in BCVA per year was insignificant between groups (p = 0.414). In multivariate analysis, baseline BCVA was the single significant predictor for switch (beta 0.137, p = 0.035). Patients with more than one anti-VEGF switch suffer from decrease in BCVA.
    Conclusions: Worse baseline BCVA is a significant predictor for anti-VEGF switch execution, though the switch has no significant impact on the change in BCVA over time. Multiple anti-VEGF switch is not recommended.
    Language English
    Publishing date 2024-02-22
    Publishing country England
    Document type Journal Article
    ZDB-ID 80091-0
    ISSN 1715-3360 ; 0008-4182
    ISSN (online) 1715-3360
    ISSN 0008-4182
    DOI 10.1016/j.jcjo.2024.01.016
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Comparative Pharmacokinetic Assessment of Innovative Sublingual, Rectal and Vaporizer Cannabis Products Versus Approved Cannabis Products in Healthy Volunteers.

    Tarlovski, Sheina / Bar Kadmon, Anat / Goldberg, Eran / Segal, Dadi / Gavish, Dov / Stepensky, David

    Cannabis and cannabinoid research

    2024  

    Abstract: Background: ...

    Abstract Background:
    Language English
    Publishing date 2024-04-24
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2867624-5
    ISSN 2378-8763 ; 2578-5125
    ISSN (online) 2378-8763
    ISSN 2578-5125
    DOI 10.1089/can.2023.0229
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: The Helix Twist: Damage and Repair Follows the DNA Minor Groove.

    Kotler, Eran / Segal, Eran

    Cell

    2018  Volume 175, Issue 4, Page(s) 902–904

    Abstract: Mutation frequencies vary along the genome, but the factors determining this variability are only partially understood. Pich et al. unravel a ∼10 bp periodicity in mutation rates at nucleosome-proximal regions that follows minor groove orientation. ... ...

    Abstract Mutation frequencies vary along the genome, but the factors determining this variability are only partially understood. Pich et al. unravel a ∼10 bp periodicity in mutation rates at nucleosome-proximal regions that follows minor groove orientation. Opposing differential DNA damage and repair processes could shape genetic divergence irrespective of selection.
    MeSH term(s) DNA ; Genome ; Germ-Line Mutation ; Nucleic Acid Conformation ; Nucleosomes
    Chemical Substances Nucleosomes ; DNA (9007-49-2)
    Language English
    Publishing date 2018-12-18
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Comment
    ZDB-ID 187009-9
    ISSN 1097-4172 ; 0092-8674
    ISSN (online) 1097-4172
    ISSN 0092-8674
    DOI 10.1016/j.cell.2018.10.034
    Database MEDical Literature Analysis and Retrieval System OnLINE

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