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  1. Article ; Online: Antimicrobial resistance pattern of anaerobic bacteria causing lower respiratory tract infections.

    Shariff, Malini / Ramengmawi, Elizabeth

    BMC microbiology

    2023  Volume 23, Issue 1, Page(s) 301

    Abstract: Background: Anaerobes are normal flora of the human body. However, they can cause serious infections in humans. Anaerobic bacteria are known to cause respiratory infections like pneumonia and acute exacerbation of chronic lower airway infections. These ... ...

    Abstract Background: Anaerobes are normal flora of the human body. However, they can cause serious infections in humans. Anaerobic bacteria are known to cause respiratory infections like pneumonia and acute exacerbation of chronic lower airway infections. These are often missed due to the complexity of their isolation and identification. Hence, this study aimed to study anaerobes causing respiratory tract infections and determine their antibiotic susceptibility.
    Materials & methods: Clinical specimens such as bronchial aspirates and pleural aspirates collected from patients with respiratory diseases attending Vallabhbhai Patel Chest Institute were processed, the anaerobes isolated were identified, and their susceptibilities to various groups of antimicrobials were studied using standard microbiological methods.
    Results: Three hundred and fourteen patients were included in the study, 154 males and 160 females. Of these 314 patients, 148 (47%) yielded anaerobes in their clinical samples. Seventy patients had more than one type of anaerobic organism. Hence, 235 isolates were recovered belonging to as many as 17 genera. The MIC of seven antibiotics on 154 isolates was tested. The isolates belonged mostly to the genera Bacteroides, Prevotella, Veillonella, and Actinomyces. Variable resistance was observed to most classes of antibiotics by many genera.
    Conclusions: Metronidazole is commonly used against anaerobes, but the study showed that the isolates were 20-30% resistant to the antibiotic. Starting this as an empirical therapy might lead to treatment failure.
    MeSH term(s) Male ; Female ; Humans ; Anti-Bacterial Agents/pharmacology ; Bacteria, Anaerobic ; Bacterial Infections/drug therapy ; Bacterial Infections/microbiology ; Microbial Sensitivity Tests ; Drug Resistance, Bacterial ; Anti-Infective Agents ; Respiratory Tract Infections
    Chemical Substances Anti-Bacterial Agents ; Anti-Infective Agents
    Language English
    Publishing date 2023-10-23
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2041505-9
    ISSN 1471-2180 ; 1471-2180
    ISSN (online) 1471-2180
    ISSN 1471-2180
    DOI 10.1186/s12866-023-03059-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Antimicrobial Resistance: Challenges and the Way Forward.

    Shariff, Malini

    The Indian journal of chest diseases & allied sciences

    2018  Volume 58, Issue 3, Page(s) 157–159

    MeSH term(s) Anti-Bacterial Agents/pharmacology ; Communicable Diseases/drug therapy ; Communicable Diseases/epidemiology ; Drug Resistance, Bacterial ; Humans ; India/epidemiology ; Infection Control/methods ; Infection Control/organization & administration ; Needs Assessment
    Chemical Substances Anti-Bacterial Agents
    Language English
    Publishing date 2018-09-11
    Publishing country India
    Document type Editorial
    ZDB-ID 416066-6
    ISSN 0377-9343 ; 0019-5111
    ISSN 0377-9343 ; 0019-5111
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: A typical

    Sonowal, Tonushyam / Shariff, Malini

    Indian journal of medical microbiology

    2019  Volume 37, Issue 2, Page(s) 287–288

    MeSH term(s) Bacterial Typing Techniques ; Clinical Laboratory Techniques/methods ; Enteropathogenic Escherichia coli/classification ; Enteropathogenic Escherichia coli/drug effects ; Enteropathogenic Escherichia coli/genetics ; Escherichia coli/classification ; Escherichia coli/drug effects ; Escherichia coli/genetics ; Escherichia coli Infections/diagnosis ; Escherichia coli Infections/microbiology ; Humans ; Laboratories, Hospital ; Microbial Sensitivity Tests
    Language English
    Publishing date 2019-11-20
    Publishing country United States
    Document type Letter
    ZDB-ID 1038798-5
    ISSN 1998-3646 ; 0255-0857
    ISSN (online) 1998-3646
    ISSN 0255-0857
    DOI 10.4103/ijmm.IJMM_19_60
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Exacerbation of bronchiectasis by Pseudomonas monteilii: a case report.

    Aditi / Shariff, Malini / Beri, Kiran

    BMC infectious diseases

    2017  Volume 17, Issue 1, Page(s) 511

    Abstract: Background: Pseudomonas spp are important opportunistic and nosocomial pathogens. One such species is Pseudomonas monteilii (P. monteilii). It has been described as an environmental contaminant and potential pathogen. We identified this organism as the ... ...

    Abstract Background: Pseudomonas spp are important opportunistic and nosocomial pathogens. One such species is Pseudomonas monteilii (P. monteilii). It has been described as an environmental contaminant and potential pathogen. We identified this organism as the causative agent of an exacerbation of bronchiectasis and an environmental contaminant in our hospital on two separate occasions.
    Case presentation: P. monteilii was the cause of an exacerbation of bronchiectasis in a 30-year-old HIV negative male. Patient presented with cough with sputum production and exertional dyspnea. The isolate was recovered from a sputum sample in significant counts and definitively identified by Matrix-Assisted Laser Desorption/Ionisation- Time of Flight Mass Spectrometry (MALDI-TOF MS). He was treated with piperacillin-tazobactam and recovered clinically and microbiologically. Another two isolates of the organism were contaminants from the hospital environment. The three isolates were susceptible to all tested antibiotics. Typing by Random amplification of polymorphic DNA (RAPD) found no clonal relationship between them.
    Conclusions: Less common species of Pseudomonas need to be identified accurately. This organism is identified by commonly used phenotypic systems as P. putida which may have contributed to a lower reported prevalence. P. monteilii is a known environmental contaminant and must also be considered as a potential pathogen, particularly in patients with chronic lung disease.
    MeSH term(s) Adult ; Bronchiectasis/drug therapy ; Bronchiectasis/etiology ; Bronchiectasis/microbiology ; Humans ; Male ; Penicillanic Acid/analogs & derivatives ; Penicillanic Acid/therapeutic use ; Piperacillin/therapeutic use ; Pseudomonas/genetics ; Pseudomonas/isolation & purification ; Pseudomonas/pathogenicity ; Pseudomonas Infections/complications ; Pseudomonas Infections/drug therapy ; Pseudomonas Infections/etiology ; Random Amplified Polymorphic DNA Technique ; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
    Chemical Substances piperacillin, tazobactam drug combination (157044-21-8) ; Penicillanic Acid (87-53-6) ; Piperacillin (X00B0D5O0E)
    Language English
    Publishing date 2017-07-24
    Publishing country England
    Document type Case Reports ; Journal Article
    ISSN 1471-2334
    ISSN (online) 1471-2334
    DOI 10.1186/s12879-017-2600-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Pulmonary Nocardiosis: Review of Cases and an Update.

    Shariff, Malini / Gunasekaran, Jayanthi

    Canadian respiratory journal

    2016  Volume 2016, Page(s) 7494202

    Abstract: Nocardia, a branching, filamentous bacteria, is widely distributed in the environment and can cause human infection in immune-compromised hosts. Inhalation of Nocardia leads to pulmonary disease. Microbiology laboratory processed the clinical samples ... ...

    Abstract Nocardia, a branching, filamentous bacteria, is widely distributed in the environment and can cause human infection in immune-compromised hosts. Inhalation of Nocardia leads to pulmonary disease. Microbiology laboratory processed the clinical samples from patients with respiratory infections. Smears were prepared from the samples and were stained and cultured. Five cases were positive for Nocardia. They were treated with the trimethoprim-sulfamethoxazole combination. The disease was cured in three patients, and two died due to other comorbid conditions leading to complications. Nocardiosis is encountered in parts of the world even where it is not endemic due to increased world travel. So physicians and laboratory staff should be aware of this and try to diagnose it. Early detection can lead to the prompt initiation of treatment and reduced mortality in these patients. Patients with disseminated or severe nocardiosis should be treated with combination therapy with two or more active agents.
    MeSH term(s) Adult ; Aged ; Amikacin/therapeutic use ; Anti-Bacterial Agents/therapeutic use ; Cough/etiology ; Diabetes Mellitus/immunology ; Dyspnea/etiology ; Female ; Humans ; Imipenem/therapeutic use ; Immunocompromised Host ; India ; Male ; Middle Aged ; Nocardia Infections/complications ; Nocardia Infections/drug therapy ; Nocardia Infections/immunology ; Pneumonia, Bacterial/complications ; Pneumonia, Bacterial/drug therapy ; Pneumonia, Bacterial/immunology ; Pulmonary Disease, Chronic Obstructive/complications ; Pulmonary Disease, Chronic Obstructive/immunology ; Thienamycins/therapeutic use ; Trimethoprim, Sulfamethoxazole Drug Combination/therapeutic use ; Tuberculosis, Pulmonary/complications ; Tuberculosis, Pulmonary/immunology
    Chemical Substances Anti-Bacterial Agents ; Thienamycins ; Imipenem (71OTZ9ZE0A) ; Trimethoprim, Sulfamethoxazole Drug Combination (8064-90-2) ; Amikacin (84319SGC3C) ; meropenem (FV9J3JU8B1)
    Language English
    Publishing date 2016
    Publishing country Egypt
    Document type Case Reports ; Journal Article
    ZDB-ID 1213103-9
    ISSN 1916-7245 ; 1198-2241
    ISSN (online) 1916-7245
    ISSN 1198-2241
    DOI 10.1155/2016/7494202
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Corynebacterium striatum: an emerging respiratory pathogen.

    Shariff, Malini / Aditi, Aditi / Beri, Kiran

    Journal of infection in developing countries

    2018  Volume 12, Issue 7, Page(s) 581–586

    Abstract: Introduction: Corynebacterium spp. are primarily considered normal flora and dismissed when isolated from clinical specimens. In recent years, Corynebacterium striatum has emerged as a multi-drug resistant human pathogen which can cause nosocomial ... ...

    Abstract Introduction: Corynebacterium spp. are primarily considered normal flora and dismissed when isolated from clinical specimens. In recent years, Corynebacterium striatum has emerged as a multi-drug resistant human pathogen which can cause nosocomial outbreaks. The organism has infrequently been noted to cause respiratory infections. A retrospective study was conducted to identify the clinical and microbiological features of respiratory infection by Corynebacterium striatum.
    Methodology: C. striatum isolates from clinical and surveillance samples were tested for susceptibility to antimicrobials and typed by Random Amplification of Polymorphic DNA (RAPD). Clinical data was obtained through a retrospective review of records.
    Results: 15 isolates from clinical and surveillance samples of 11 hospitalised patients were included. The patients suffered from either an exacerbation of COPD (n = 9) or pneumonia (n = 2). The isolates were all multi-drug resistant. RAPD typing found no evidence of an outbreak/ transmission between patients.
    Conclusions: Corynebacterium spp. must be considered potential pathogens. Suspicious isolates should be identified to the species level since Corynebacterium striatum is often multi-drug resistant.
    Language English
    Publishing date 2018-07-31
    Publishing country Italy
    Document type Journal Article
    ZDB-ID 2394024-4
    ISSN 1972-2680 ; 2036-6590
    ISSN (online) 1972-2680
    ISSN 2036-6590
    DOI 10.3855/jidc.10406
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Data highlighting miR-155 and GAPDH correlation.

    Khanna, Madhu / Saini, Sanjesh / Shariff, Malini / Ronsard, Larance / Singh, Jitender K / Kumar, Harish

    Data in brief

    2019  Volume 24, Page(s) 103945

    Abstract: This data represents the effect of miR-155 on the expression of commonly used housekeeping genes, GAPDH, Beta Actin, RPL13A, and U6. The human miR-155 and control RNA were transfected to A549 cells by electroporation. Expression of these genes was ... ...

    Abstract This data represents the effect of miR-155 on the expression of commonly used housekeeping genes, GAPDH, Beta Actin, RPL13A, and U6. The human miR-155 and control RNA were transfected to A549 cells by electroporation. Expression of these genes was compared in both groups by real-time PCR. The significant up-regulation in the expression of GAPDH was observed in the miR-155 transfected samples as compared to control while no major change was observed in the expression of the other three genes.
    Language English
    Publishing date 2019-04-27
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2786545-9
    ISSN 2352-3409 ; 2352-3409
    ISSN (online) 2352-3409
    ISSN 2352-3409
    DOI 10.1016/j.dib.2019.103945
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Similar virulence properties of infection and colonization associated Pseudomonas aeruginosa.

    Aditi / Shariff, Malini / Chhabra, Sunil K / Rahman, Mujeeb-Ur

    Journal of medical microbiology

    2017  Volume 66, Issue 10, Page(s) 1489–1498

    Abstract: Purpose: Pseudomonas aeruginosa is one of the agents that are commonly implicated in nosocomial infections. However, it is also present as a commensal in various body sites of healthy persons, making the diagnosis of infection by culture difficult. A ... ...

    Abstract Purpose: Pseudomonas aeruginosa is one of the agents that are commonly implicated in nosocomial infections. However, it is also present as a commensal in various body sites of healthy persons, making the diagnosis of infection by culture difficult. A number of virulence factors expressed by the organism have been implicated in its pathogenicity. We undertook this study to identify the host and organism factors associated with infection.
    Methodology: Pathogenic, colonizing and environmental isolates were tested for apr, lasB, the T3SS effector exoenzymes (exoS, exoT, exoU and exoY) and toxA genes, biofilm production and antimicrobial susceptibility. The isolates were further typed by RAPD.
    Results: Eighty-seven isolates from 61 patients, including 11 environmental isolates, were obtained. None of the virulence factors were found to be significantly associated with infection, and nor was the antimicrobial susceptibility. The presence of the exoU gene and infection by MDR strains correlated significantly with the duration of hospital stay. Positivity for exoS and exoU genes was found to be strongly correlated with multi-drug resistance. exoU positivity correlated strongly with fluoroquinolone resistance. Sinks in the ward and intensive care unit were found to be a niche for XDR P. aeruginosa. Eighty-five isolates were typeable using the ERIC2 primer, showing 71 distinct RAPD patterns with >15 % difference in UPGMA-generated dice coefficients.
    Conclusions: exoU positivity is associated with severe disease, as evidenced by the longer duration of hospital stay of these patients. However, the presence of virulence factors or multi-drug resistance in the cultured strain should not prompt the administration of anti-pseudomonal chemotherapy.
    MeSH term(s) Adult ; Aged ; Aged, 80 and over ; Anti-Bacterial Agents/pharmacology ; Carrier State ; Cross Infection/microbiology ; Drug Resistance, Multiple, Bacterial ; Female ; Humans ; Male ; Middle Aged ; Pseudomonas Infections/microbiology ; Pseudomonas aeruginosa/drug effects ; Pseudomonas aeruginosa/pathogenicity ; Virulence ; Young Adult
    Chemical Substances Anti-Bacterial Agents
    Language English
    Publishing date 2017-09-12
    Publishing country England
    Document type Journal Article
    ZDB-ID 218356-0
    ISSN 1473-5644 ; 0022-2615
    ISSN (online) 1473-5644
    ISSN 0022-2615
    DOI 10.1099/jmm.0.000569
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Data highlighting miR-155 and GAPDH correlation

    Madhu Khanna / Sanjesh Saini / Malini Shariff / Larance Ronsard / Jitender K. Singh / Harish Kumar

    Data in Brief, Vol 24, Iss , Pp - (2019)

    2019  

    Abstract: This data represents the effect of miR-155 on the expression of commonly used housekeeping genes, GAPDH, Beta Actin, RPL13A, and U6. The human miR-155 and control RNA were transfected to A549 cells by electroporation. Expression of these genes was ... ...

    Abstract This data represents the effect of miR-155 on the expression of commonly used housekeeping genes, GAPDH, Beta Actin, RPL13A, and U6. The human miR-155 and control RNA were transfected to A549 cells by electroporation. Expression of these genes was compared in both groups by real-time PCR. The significant up-regulation in the expression of GAPDH was observed in the miR-155 transfected samples as compared to control while no major change was observed in the expression of the other three genes. Keywords: MiR-155, Glucose metabolism, Housekeeping genes, microRNA electroporation
    Keywords Computer applications to medicine. Medical informatics ; R858-859.7 ; Science (General) ; Q1-390
    Language English
    Publishing date 2019-06-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article: Data highlighting miR-155 and GAPDH correlation

    Khanna, Madhu / Saini, Sanjesh / Shariff, Malini / Ronsard, Larance / Singh, Jitender K. / Kumar, Harish

    Data in Brief. 2019 June, v. 24

    2019  

    Abstract: This data represents the effect of miR-155 on the expression of commonly used housekeeping genes, GAPDH, Beta Actin, RPL13A, and U6. The human miR-155 and control RNA were transfected to A549 cells by electroporation. Expression of these genes was ... ...

    Abstract This data represents the effect of miR-155 on the expression of commonly used housekeeping genes, GAPDH, Beta Actin, RPL13A, and U6. The human miR-155 and control RNA were transfected to A549 cells by electroporation. Expression of these genes was compared in both groups by real-time PCR. The significant up-regulation in the expression of GAPDH was observed in the miR-155 transfected samples as compared to control while no major change was observed in the expression of the other three genes.
    Keywords RNA ; actin ; electroporation ; humans ; quantitative polymerase chain reaction
    Language English
    Dates of publication 2019-06
    Publishing place Elsevier Inc.
    Document type Article
    ZDB-ID 2786545-9
    ISSN 2352-3409
    ISSN 2352-3409
    DOI 10.1016/j.dib.2019.103945
    Database NAL-Catalogue (AGRICOLA)

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