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  1. Article ; Online: Mutagenic potential and structural alerts of phytotoxins.

    Bassan, Arianna / Pavan, Manuela / Lo Piparo, Elena

    Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association

    2022  Volume 173, Page(s) 113562

    Abstract: Toxic plant-produced chemicals, so-called phytotoxins, constitute a category of natural compounds belonging to a diversity of chemical classes. Some of them (e.g., alkaloids, terpenes, saponins) are associated with high toxic potency, while for many of ... ...

    Abstract Toxic plant-produced chemicals, so-called phytotoxins, constitute a category of natural compounds belonging to a diversity of chemical classes. Some of them (e.g., alkaloids, terpenes, saponins) are associated with high toxic potency, while for many of others no toxicological data is available. In this study, the mutagenic potential of 1586 phytotoxins, as obtained from a publicly available database, was investigated applying different in silico approaches. (Q)SAR models (including statistical-based and rule-based systems) were used for the prediction of bacterial in vitro mutagenicity (Ames test) and the results from multiple tools were combined to assign consensus predicted values (i.e., positive, negative, inconclusive). The overall consensus outcome was then employed to investigate relationships between structural features of classes of phytotoxins and potential mutagenicity, allowing the identification of structural alerts raising a specific concern. The results highlighted that about 10% of the screened compounds were predicted to have mutagenic potential and the critical classes of concern, such as alkaloids, were further investigated in terms of subclasses (e.g., indole alkaloids, isoquinoline alkaloids), getting a deeper insight into the mutagenic potential of possible naturally occurring chemicals in plant materials and their structural alerts.
    MeSH term(s) Mutagens/toxicity ; Mutagens/chemistry ; Mutagenicity Tests/methods ; Mutagenesis ; Databases, Factual ; Alkaloids/toxicity ; Quantitative Structure-Activity Relationship
    Chemical Substances Mutagens ; Alkaloids
    Language English
    Publishing date 2022-12-21
    Publishing country England
    Document type Journal Article
    ZDB-ID 782617-5
    ISSN 1873-6351 ; 0278-6915
    ISSN (online) 1873-6351
    ISSN 0278-6915
    DOI 10.1016/j.fct.2022.113562
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: In silico

    Benigni, Romualdo / Bassan, Arianna / Pavan, Manuela

    Expert opinion on drug metabolism & toxicology

    2020  Volume 16, Issue 8, Page(s) 651–662

    Abstract: Introduction: Whereas in the past, (Q)SAR methods have been largely used to support the design of new drugs, in the last few decades, there has been a new interest in its applications for the assessment of drug safety. In particular, the ICH M7 ... ...

    Abstract Introduction: Whereas in the past, (Q)SAR methods have been largely used to support the design of new drugs, in the last few decades, there has been a new interest in its applications for the assessment of drug safety. In particular, the ICH M7 guideline has introduced the concept that (Q)SAR predictions for the Ames mutagenicity of drug impurities can be used for regulatory purposes.
    Areas covered: This review introduces the ICH M7 conceptual framework and illustrates the most updated evaluations of the
    Expert opinion: Given the growing recognition of (Q)SAR approaches, more investment will be devoted to its improvement. The major areas of research should be the expansion and curation of the experimental training sets, with particular attention to the portions of chemical space which are poorly represented. New modeling methodologies (e.g. machine-learning methods) may support this effort, particularly for treating proprietary data without disclosure. Research on new integrative approaches for regulatory decisions will also be important.
    MeSH term(s) Animals ; Computer Simulation ; Drug Contamination ; Drug Design ; Drug and Narcotic Control ; Humans ; Machine Learning ; Mutagenicity Tests/methods ; Quantitative Structure-Activity Relationship
    Language English
    Publishing date 2020-06-28
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 2214462-6
    ISSN 1744-7607 ; 1742-5255
    ISSN (online) 1744-7607
    ISSN 1742-5255
    DOI 10.1080/17425255.2020.1785428
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: In silico

    Keller, Douglas A / Bassan, Arianna / Amberg, Alexander / Burns Naas, Leigh Ann / Chambers, Jon / Cross, Kevin / Hall, Frances / Jahnke, Gloria D / Luniwal, Amarjit / Manganelli, Serena / Mestres, Jordi / Mihalchik-Burhans, Amy L / Woolley, David / Tice, Raymond R

    Frontiers in toxicology

    2023  Volume 5, Page(s) 1234498

    Abstract: ... In ... ...

    Abstract In silico
    Language English
    Publishing date 2023-11-13
    Publishing country Switzerland
    Document type Journal Article
    ISSN 2673-3080
    ISSN (online) 2673-3080
    DOI 10.3389/ftox.2023.1234498
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Implementation of

    Myatt, Glenn J / Bassan, Arianna / Bower, Dave / Johnson, Candice / Miller, Scott / Pavan, Manuela / Cross, Kevin P

    Computational toxicology (Amsterdam, Netherlands)

    2021  Volume 21

    Abstract: Mechanistically-driven alternative approaches to hazard assessment invariably require a battery of tests, including ... ...

    Abstract Mechanistically-driven alternative approaches to hazard assessment invariably require a battery of tests, including both
    Language English
    Publishing date 2021-10-28
    Publishing country Netherlands
    Document type Journal Article
    ISSN 2468-1113
    ISSN 2468-1113
    DOI 10.1016/j.comtox.2021.100201
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Developing a pragmatic consensus procedure supporting the ICH S1B(R1) weight of evidence carcinogenicity assessment.

    Bassan, Arianna / Steigerwalt, Ronald / Keller, Douglas / Beilke, Lisa / Bradley, Paul M / Bringezu, Frank / Brock, William J / Burns-Naas, Leigh Ann / Chambers, Jon / Cross, Kevin / Dorato, Michael / Elespuru, Rosalie / Fuhrer, Douglas / Hall, Frances / Hartke, Jim / Jahnke, Gloria D / Kluxen, Felix M / McDuffie, Eric / Schmidt, Friedemann /
    Valentin, Jean-Pierre / Woolley, David / Zane, Doris / Myatt, Glenn J

    Frontiers in toxicology

    2024  Volume 6, Page(s) 1370045

    Abstract: The ICH S1B carcinogenicity global testing guideline has been recently revised with a novel addendum that describes a comprehensive integrated Weight of Evidence (WoE) approach to determine the need for a 2-year rat carcinogenicity study. In the present ... ...

    Abstract The ICH S1B carcinogenicity global testing guideline has been recently revised with a novel addendum that describes a comprehensive integrated Weight of Evidence (WoE) approach to determine the need for a 2-year rat carcinogenicity study. In the present work, experts from different organizations have joined efforts to standardize as much as possible a procedural framework for the integration of evidence associated with the different ICH S1B(R1) WoE criteria. The framework uses a pragmatic consensus procedure for carcinogenicity hazard assessment to facilitate transparent, consistent, and documented decision-making and it discusses best-practices both for the organization of studies and presentation of data in a format suitable for regulatory review. First, it is acknowledged that the six WoE factors described in the addendum form an integrated network of evidence within a holistic assessment framework that is used synergistically to analyze and explain safety signals. Second, the proposed standardized procedure builds upon different considerations related to the primary sources of evidence, mechanistic analysis, alternative methodologies and novel investigative approaches, metabolites, and reliability of the data and other acquired information. Each of the six WoE factors is described highlighting how they can contribute evidence for the overall WoE assessment. A suggested reporting format to summarize the cross-integration of evidence from the different WoE factors is also presented. This work also notes that even if a 2-year rat study is ultimately required, creating a WoE assessment is valuable in understanding the specific factors and levels of human carcinogenic risk better than have been identified previously with the 2-year rat bioassay alone.
    Language English
    Publishing date 2024-04-05
    Publishing country Switzerland
    Document type Journal Article
    ISSN 2673-3080
    ISSN (online) 2673-3080
    DOI 10.3389/ftox.2024.1370045
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Filling Data Gaps by Read-across: A Mini Review on its Application, Developments and Challenges.

    Kovarich, Simona / Ceriani, Lidia / Fuart Gatnik, Mojca / Bassan, Arianna / Pavan, Manuela

    Molecular informatics

    2019  Volume 38, Issue 8-9, Page(s) e1800121

    Abstract: Read-across is a non-testing data gap filling technique which provides information for toxicological assessments by inferring from known toxicity data of compound(s) with a "similar" property or chemical profile. The increased usage of read-across was ... ...

    Abstract Read-across is a non-testing data gap filling technique which provides information for toxicological assessments by inferring from known toxicity data of compound(s) with a "similar" property or chemical profile. The increased usage of read-across was driven by monetary, timing and ethical costs associated with in vivo testing, as well as promoted by regulatory frameworks to minimize new animal testing (e. g., EU-REACH). Several guidance documents have been published by ECHA and OECD providing guidelines on how to perform, assess and document a read-across study. In parallel, much effort was invested by the scientific community to provide good read-across practices and structured frameworks to enhance validity of read-across justifications. Nevertheless, read-across is an evolving method with several open issues and opportunities. A brief review is here provided on key developments on the use of read-across, regulatory and scientific expectations, practical hurdles and open challenges.
    MeSH term(s) Animals ; Databases, Factual ; Humans ; Quantitative Structure-Activity Relationship
    Language English
    Publishing date 2019-04-12
    Publishing country Germany
    Document type Journal Article ; Review
    ZDB-ID 2537668-8
    ISSN 1868-1751 ; 1868-1743
    ISSN (online) 1868-1751
    ISSN 1868-1743
    DOI 10.1002/minf.201800121
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Reorganization of a Nuclear Medicine Department in Northern Italy During a 2-Month Lockdown for COVID-19 Pandemic.

    Maffione, Anna Margherita / Chondrogiannis, Sotirios / Rampin, Lucia / Grassetto, Gaia / Marzola, Maria Cristina / Bassan, Alex / Massaro, Arianna / Colletti, Patrick M / Rubello, Domenico

    Clinical nuclear medicine

    2020  Volume 45, Issue 11, Page(s) 854–859

    Abstract: Coronavirus disease (COVID-19) outbreak has profoundly changed the organization of hospital activities. We present our experience of reorganization of a nuclear medicine service settled in Northern Italy during the pandemic period of March and April 2020 ...

    Abstract Coronavirus disease (COVID-19) outbreak has profoundly changed the organization of hospital activities. We present our experience of reorganization of a nuclear medicine service settled in Northern Italy during the pandemic period of March and April 2020 characterized a government-mandated lockdown. Our service remained open during the whole period, performing approximately 80% of the routine practice, while maintaining it COVID-free despite the geographical context characterized by a high risk of infection. Reorganization involved all aspects of a nuclear medicine department, following local, national, and international guidelines for prioritizing patients, telephone and physical triages, deployment of appropriate personal protective equipment, social distancing, and logistic changes for scheduling examinations and disinfection procedures. All staff remained COVID-19-negative despite the unintentional admission of 4 patients who later turned out to be positive for the severe acute respiratory syndrome coronavirus 2. These adopted measures would serve as the basis for safe nuclear medicine services in the post-lockdown phase.
    MeSH term(s) COVID-19 ; Coronavirus Infections/epidemiology ; Hospital Departments/organization & administration ; Humans ; Italy/epidemiology ; Nuclear Medicine ; Pandemics ; Pneumonia, Viral/epidemiology
    Keywords covid19
    Language English
    Publishing date 2020-08-12
    Publishing country United States
    Document type Journal Article
    ZDB-ID 197628-x
    ISSN 1536-0229 ; 0363-9762
    ISSN (online) 1536-0229
    ISSN 0363-9762
    DOI 10.1097/RLU.0000000000003244
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Current status and future directions for a neurotoxicity hazard assessment framework that integrates

    Crofton, Kevin M / Bassan, Arianna / Behl, Mamta / Chushak, Yaroslav G / Fritsche, Ellen / Gearhart, Jeffery M / Marty, Mary Sue / Mumtaz, Moiz / Pavan, Manuela / Ruiz, Patricia / Sachana, Magdalini / Selvam, Rajamani / Shafer, Timothy J / Stavitskaya, Lidiya / Szabo, David T / Szabo, Steven T / Tice, Raymond R / Wilson, Dan / Woolley, David /
    Myatt, Glenn J

    Computational toxicology (Amsterdam, Netherlands)

    2022  Volume 22

    Abstract: Neurotoxicology is the study of adverse effects on the structure or function of the developing or mature adult nervous system following exposure to chemical, biological, or physical agents. The development of more informative alternative methods to ... ...

    Abstract Neurotoxicology is the study of adverse effects on the structure or function of the developing or mature adult nervous system following exposure to chemical, biological, or physical agents. The development of more informative alternative methods to assess developmental (DNT) and adult (NT) neurotoxicity induced by xenobiotics is critically needed. The use of such alternative methods including
    Language English
    Publishing date 2022-03-17
    Publishing country Netherlands
    Document type Journal Article
    ISSN 2468-1113
    ISSN 2468-1113
    DOI 10.1016/j.comtox.2022.100223
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Reorganization of a Nuclear Medicine Department in Northern Italy During a 2-Month Lockdown for COVID-19 Pandemic

    Maffione, Anna Margherita / Chondrogiannis, Sotirios / Rampin, Lucia / Grassetto, Gaia / Marzola, Maria Cristina / Bassan, Alex / Massaro, Arianna / Colletti, Patrick M. / Rubello, Domenico

    Clinical Nuclear Medicine

    2020  Volume 45, Issue 11, Page(s) 854–859

    Keywords Radiology Nuclear Medicine and imaging ; General Medicine ; covid19
    Language English
    Publisher Ovid Technologies (Wolters Kluwer Health)
    Publishing country us
    Document type Article ; Online
    ZDB-ID 197628-x
    ISSN 1536-0229 ; 0363-9762
    ISSN (online) 1536-0229
    ISSN 0363-9762
    DOI 10.1097/rlu.0000000000003244
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article ; Online: The Consultancy Activity on In Silico Models for Genotoxic Prediction of Pharmaceutical Impurities.

    Pavan, Manuela / Kovarich, Simona / Bassan, Arianna / Broccardo, Lorenza / Yang, Chihae / Fioravanzo, Elena

    Methods in molecular biology (Clifton, N.J.)

    2016  Volume 1425, Page(s) 511–529

    Abstract: The toxicological assessment of DNA-reactive/mutagenic or clastogenic impurities plays an important role in the regulatory process for pharmaceuticals; in this context, in silico structure-based approaches are applied as primary tools for the evaluation ... ...

    Abstract The toxicological assessment of DNA-reactive/mutagenic or clastogenic impurities plays an important role in the regulatory process for pharmaceuticals; in this context, in silico structure-based approaches are applied as primary tools for the evaluation of the mutagenic potential of the drug impurities. The general recommendations regarding such use of in silico methods are provided in the recent ICH M7 guideline stating that computational (in silico) toxicology assessment should be performed using two (Q)SAR prediction methodologies complementing each other: a statistical-based method and an expert rule-based method.Based on our consultant experience, we describe here a framework for in silico assessment of mutagenic potential of drug impurities. Two main applications of in silico methods are presented: (1) support and optimization of drug synthesis processes by providing early indication of potential genotoxic impurities and (2) regulatory evaluation of genotoxic potential of impurities in compliance with the ICH M7 guideline. Some critical case studies are also discussed.
    Language English
    Publishing date 2016
    Publishing country United States
    Document type Journal Article
    ISSN 1940-6029
    ISSN (online) 1940-6029
    DOI 10.1007/978-1-4939-3609-0_21
    Database MEDical Literature Analysis and Retrieval System OnLINE

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