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  1. Book ; Online: Author response for "Recent Biotechnological Tools for Diagnosis of COVID-19 Disease

    Bikash C. Behera / Rashmi R. Mishra / Hrudayanath Thatoi

    A review"

    2020  

    Keywords covid19
    Publisher Wiley
    Publishing country us
    Document type Book ; Online
    DOI 10.1002/btpr.3078/v2/response1
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: Recent biotechnological tools for diagnosis of corona virus disease: A review.

    Behera, Bikash C / Mishra, Rashmi R / Thatoi, Hrudayanath

    Biotechnology progress

    2020  Volume 37, Issue 1, Page(s) e3078

    Abstract: Recently, a corona virus disease (COVID-19) caused by a novel corona virus (sevier acute respiratory syndrome corona virus 2; SARS-CoV-2), rapidly spread throughout the world. It has been resulted an unprecedented public health crisis and has become a ... ...

    Abstract Recently, a corona virus disease (COVID-19) caused by a novel corona virus (sevier acute respiratory syndrome corona virus 2; SARS-CoV-2), rapidly spread throughout the world. It has been resulted an unprecedented public health crisis and has become a global threat. WHO declared it as a pandemic due to rapid transmission and severity of the disease. According to WHO, as of 22nd of August 2020, the disease spread over 213 countries of the world having 22,812,491 confirmed cases and 795,132 deaths recorded worldwide. In the absence of suitable antiviral drugs and vaccines, the current pandemic has created an urgent need for accurate diagnostic tools that would be helpful for early detection of the patients. Many tests including classical and high-throughput techniques have developed and obtained U.S. Food and drug administration (FDA) approval. However, efforts are being made to develop new diagnostic tools for detection of the disease. Several molecular diagnostic tests such as real-time-polymerase chain reaction, real-time isothermal loop-mediated amplification (RT-LAMP), full genome analysis by next-generation sequencing, clustered regularly interspaced short palindromic repeats technique and microarray-based assays along with other techniques such as computed tomography scan, biomarkers, biosensor, nanotechnology, serological test, enzyme-linked immunosorbent assay (ELISA), isolation of viral strain in cell culture are currently available for diagnosis of COVID-19 infection. This review provides a brief overview of promising high-throughput techniques currently used for detection of SARS-CoV-2, along with their scope and limitations that may be used for effective control of the disease.
    MeSH term(s) COVID-19/diagnosis ; COVID-19/epidemiology ; COVID-19/virology ; COVID-19 Testing/methods ; Enzyme-Linked Immunosorbent Assay/methods ; Humans ; Molecular Diagnostic Techniques/methods ; Pandemics ; SARS-CoV-2/isolation & purification ; Sensitivity and Specificity
    Keywords covid19
    Language English
    Publishing date 2020-09-21
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 165657-0
    ISSN 1520-6033 ; 8756-7938
    ISSN (online) 1520-6033
    ISSN 8756-7938
    DOI 10.1002/btpr.3078
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Recent biotechnological tools for diagnosis of corona virus disease: A review

    Behera, Bikash C / Mishra, Rashmi R / Thatoi, Hrudayanath

    Biotechnol Prog

    Abstract: Recently, a corona virus disease (COVID-19) caused by a novel corona virus (sevier acute respiratory syndrome corona virus 2; SARS-CoV-2), rapidly spread throughout the world. It has been resulted an unprecedented public health crisis and has become a ... ...

    Abstract Recently, a corona virus disease (COVID-19) caused by a novel corona virus (sevier acute respiratory syndrome corona virus 2; SARS-CoV-2), rapidly spread throughout the world. It has been resulted an unprecedented public health crisis and has become a global threat. WHO declared it as a pandemic due to rapid transmission and severity of the disease. According to WHO, as of 22nd of August 2020, the disease spread over 213 countries of the world having 22,812,491 confirmed cases and 795,132 deaths recorded worldwide. In the absence of suitable antiviral drugs and vaccines, the current pandemic has created an urgent need for accurate diagnostic tools that would be helpful for early detection of the patients. Many tests including classical and high-throughput techniques have developed and obtained U.S. Food and drug administration (FDA) approval. However, efforts are being made to develop new diagnostic tools for detection of the disease. Several molecular diagnostic tests such as real-time-polymerase chain reaction, real-time isothermal loop-mediated amplification (RT-LAMP), full genome analysis by next-generation sequencing, clustered regularly interspaced short palindromic repeats technique and microarray-based assays along with other techniques such as computed tomography scan, biomarkers, biosensor, nanotechnology, serological test, enzyme-linked immunosorbent assay (ELISA), isolation of viral strain in cell culture are currently available for diagnosis of COVID-19 infection. This review provides a brief overview of promising high-throughput techniques currently used for detection of SARS-CoV-2, along with their scope and limitations that may be used for effective control of the disease.
    Keywords covid19
    Publisher WHO
    Document type Article
    Note WHO #Covidence: #754886
    Database COVID19

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  4. Article ; Online: The Tribal Odisha Eye Disease Study (TOES) 1: prevalence and causes of visual impairment among tribal children in an urban school in Eastern India.

    Warkad, Vivekanand U / Panda, Lapam / Behera, Pradeep / Das, Taraprasad / Mohanta, Bikash C / Khanna, Rohit

    Journal of AAPOS : the official publication of the American Association for Pediatric Ophthalmology and Strabismus

    2018  Volume 22, Issue 2, Page(s) 145.e1–145.e6

    Abstract: Purpose: To estimate the prevalence and causes of visual impairment and other ocular comorbidities among tribal children in an urban school population in eastern India.: Method: In this cross-sectional study, vision screening tests were administered ... ...

    Abstract Purpose: To estimate the prevalence and causes of visual impairment and other ocular comorbidities among tribal children in an urban school population in eastern India.
    Method: In this cross-sectional study, vision screening tests were administered to tribal school children. Demographic data, including name, age, sex, home district, height, and weight of each child, and examination data, including unaided and pinhole visual acuity, external eye examination with a flashlight, slit-lamp examination, intraocular pressure (IOP) measurement, and undilated fundus photography, were collected. Children with visual acuity of less than 20/20, abnormal anterior or posterior segment findings, and IOP of >21 mm Hg were referred for further evaluation.
    Results: Of 10,038 children (5,840 males [58.2%]) screened, 335 (median age, 9 years; range, 6-17 years) were referred. Refractive error was the most common cause of visual impairment (59.52%; 95% CI, 51.97-66.65) followed by amblyopia (17.2%; 95% CI, 12.3-23.6) and posterior segment anomaly (14.88%; 95% CI, 10.2-21.0). The prevalence of best-corrected visual acuity of 20/40 was 0.13%. The prevalence of blindness was 0.03%.
    Conclusions: Visual impairment among tribal children in this residential school is an uncommon but important disability.
    MeSH term(s) Adolescent ; Amblyopia/diagnosis ; Amblyopia/epidemiology ; Child ; Cross-Sectional Studies ; Ethnic Groups/statistics & numerical data ; Female ; Humans ; India/epidemiology ; Intraocular Pressure/physiology ; Male ; Prevalence ; Refractive Errors/diagnosis ; Refractive Errors/epidemiology ; Slit Lamp Microscopy ; Urban Population/statistics & numerical data ; Vision Screening ; Vision, Low/epidemiology ; Visual Acuity/physiology ; Visually Impaired Persons/statistics & numerical data
    Language English
    Publishing date 2018-03-16
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 1412476-2
    ISSN 1528-3933 ; 1091-8531
    ISSN (online) 1528-3933
    ISSN 1091-8531
    DOI 10.1016/j.jaapos.2017.10.020
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: A review of sub acute subdural hematoma (SASDH) with our institutional experience and its management by double barrel technique (DbT): A novel technique.

    Tripathy, Soubhagya R / Swarnakar, Pankaj K / Mishra, Sanjib / Mishra, Sudhanshu S / Dhir, Manmath K / Behera, Sanjay K / Nath, Pratap C / Jena, Somnath P / Mohanta, Itibrata / Das, Deepak / Satapathy, Mani C / Rout, Sitansu K / Behera, Bikash R / Parida, Deepak K / Rath, Tanushree S

    Surgical neurology international

    2016  Volume 7, Issue Suppl 28, Page(s) S767–S774

    Abstract: Background: Subacute subdural hematoma (SASDH) is an entity which is yet to capture the popular imagination among the neurosurgeons. Its management is often equated clinically to that of the chronic subdural hematoma (CSDH). However, their neurological ... ...

    Abstract Background: Subacute subdural hematoma (SASDH) is an entity which is yet to capture the popular imagination among the neurosurgeons. Its management is often equated clinically to that of the chronic subdural hematoma (CSDH). However, their neurological deterioration is usually rapid, which seems to align them with acute subdural hematoma (ASDH). We proceed for their epidemiological evaluation. The advantages of a novel "double barrel technique (DbT)" over the conventional burrhole drainage are also presented.
    Methods: This retrospective study was conducted on all the patients having clinical and radiological evidence of SASDH, admitted to a tertiary care referral institute, during the period August 2013 to December 2015. Postoperatively, patients were followed-up for 3-24 months.
    Results: 46.87% of the patients belonged to the 35-54 year age group with a male predominance (3.6:1); 68.7% had a history of alcohol abuse, whereas aspirin users were 25%. 87.5% cases were unilateral, 18.75% were hemispheric, and 46.87% were present on the left side. Altered consciousness (100%) followed by headache (37.5%) were the most common presenting clinical features.
    Conclusion: SASDH is an uncommon neurosurgical entity (0.89% of traumatic brain injury cases in our study) and mimics both CSDH as well as ASDH. The true incidence of SASDH may have been underestimated due to its clinical imitation with CSDH. This study in a South Asian nation also provides the epidemiological data of this rare neurosurgical entity. Outcome of surgery is good; our retrospective study confirms that "DbT" is an adequate and safe treatment. However, a better designed, randomized control trial will be needed to reinforce our findings.
    Language English
    Publishing date 2016-11-09
    Publishing country United States
    Document type Journal Article
    ISSN 2229-5097
    ISSN 2229-5097
    DOI 10.4103/2152-7806.193730
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: A conformational analysis of mouse Nalp3 domain structures by molecular dynamics simulations, and binding site analysis.

    Sahoo, Bikash R / Maharana, Jitendra / Bhoi, Gopal K / Lenka, Santosh K / Patra, Mahesh C / Dikhit, Manas R / Dubey, Praveen K / Pradhan, Sukanta K / Behera, Bijay K

    Molecular bioSystems

    2014  Volume 10, Issue 5, Page(s) 1104–1116

    Abstract: Scrutinizing various nucleotide-binding oligomerization domain (NOD)-like receptor (NLR) genes in higher eukaryotes is very important for understanding the intriguing mechanism of the host defense against pathogens. The nucleotide-binding domain (NACHT), ...

    Abstract Scrutinizing various nucleotide-binding oligomerization domain (NOD)-like receptor (NLR) genes in higher eukaryotes is very important for understanding the intriguing mechanism of the host defense against pathogens. The nucleotide-binding domain (NACHT), leucine-rich repeat (LRR), and pyrin domains (PYD)-containing protein 3 (Nalp3), is an intracellular innate immune receptor and is associated with several immune system related disorders. Despite Nalp3's protective role during a pathogenic invasion, the molecular features and structural organization of this crucial protein is poorly understood. Using comparative modeling and molecular dynamics simulations, we have studied the structural architecture of Nalp3 domains, and characterized the dynamic and energetic parameters of adenosine triphosphate (ATP) binding in NACHT, and pathogen-derived ligands muramyl dipeptide (MDP) and imidazoquinoline with LRR domains. The results suggested that walker A, B and extended walker B motifs were the key ATP binding regions in NACHT that mediate self-oligomerization. The analysis of the binding sites of MDP and imidazoquinoline revealed LRR 7-9 to be the most energetically favored site for imidazoquinoline interaction. However, the binding free energy calculations using the Molecular Mechanics/Poisson-Boltzmann Surface Area (MM/PBSA) method indicated that MDP is incompatible for activating the Nalp3 molecule in its monomeric form, and suggest its complex interaction with NOD2 or other NLRs accounts for MDP recognition. The high binding affinity of ATP with NACHT was correlated to the experimental data for human NLRs. Our binding site prediction for imidazoquinoline in LRR warrants further investigation via in vivo models. This is the first study that provides ligand recognition in mouse Nalp3 and its spatial structural arrangements.
    MeSH term(s) Amino Acid Sequence ; Animals ; Binding Sites ; Carrier Proteins/chemistry ; Humans ; Ligands ; Mice ; Molecular Docking Simulation ; Molecular Dynamics Simulation ; Molecular Sequence Data ; Mutagenesis, Site-Directed ; NLR Family, Pyrin Domain-Containing 3 Protein ; Principal Component Analysis ; Protein Structure, Tertiary ; Reproducibility of Results ; Sequence Alignment ; Sequence Analysis, DNA ; Thermodynamics
    Chemical Substances Carrier Proteins ; Ligands ; NLR Family, Pyrin Domain-Containing 3 Protein ; Nlrp3 protein, mouse
    Language English
    Publishing date 2014-05
    Publishing country England
    Document type Journal Article
    ZDB-ID 2188635-0
    ISSN 1742-2051 ; 1742-206X
    ISSN (online) 1742-2051
    ISSN 1742-206X
    DOI 10.1039/c3mb70600a
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: A review of sub acute subdural hematoma (SASDH) with our institutional experience and its management by double barrel technique (DbT)

    Soubhagya R Tripathy / Pankaj K Swarnakar / Sanjib Mishra / Sudhanshu S Mishra / Manmath K Dhir / Sanjay K Behera / Pratap C Nath / Somnath P Jena / Itibrata Mohanta / Deepak Das / Mani C Satapathy / Sitansu K Rout / Bikash R Behera / Deepak K Parida / Tanushree S Rath

    Surgical Neurology International, Vol 7, Iss 29, Pp 767-

    A novel technique

    2016  Volume 774

    Abstract: Background: Subacute subdural hematoma (SASDH) is an entity which is yet to capture the popular imagination among the neurosurgeons. Its management is often equated clinically to that of the chronic subdural hematoma (CSDH). However, their neurological ... ...

    Abstract Background: Subacute subdural hematoma (SASDH) is an entity which is yet to capture the popular imagination among the neurosurgeons. Its management is often equated clinically to that of the chronic subdural hematoma (CSDH). However, their neurological deterioration is usually rapid, which seems to align them with acute subdural hematoma (ASDH). We proceed for their epidemiological evaluation. The advantages of a novel "double barrel technique (DbT)" over the conventional burrhole drainage are also presented. Methods: This retrospective study was conducted on all the patients having clinical and radiological evidence of SASDH, admitted to a tertiary care referral institute, during the period August 2013 to December 2015. Postoperatively, patients were followed-up for 3-24 months. Results: 46.87% of the patients belonged to the 35-54 year age group with a male predominance (3.6:1); 68.7% had a history of alcohol abuse, whereas aspirin users were 25%. 87.5% cases were unilateral, 18.75% were hemispheric, and 46.87% were present on the left side. Altered consciousness (100%) followed by headache (37.5%) were the most common presenting clinical features. Conclusion: SASDH is an uncommon neurosurgical entity (0.89% of traumatic brain injury cases in our study) and mimics both CSDH as well as ASDH. The true incidence of SASDH may have been underestimated due to its clinical imitation with CSDH. This study in a South Asian nation also provides the epidemiological data of this rare neurosurgical entity. Outcome of surgery is good; our retrospective study confirms that "DbT" is an adequate and safe treatment. However, a better designed, randomized control trial will be needed to reinforce our findings.
    Keywords Alcohol ; double barrel technique ; neomembrane ; subacute subdural hematoma ; trivial trauma ; Medicine ; R ; Surgery ; RD1-811 ; Internal medicine ; RC31-1245 ; Neurosciences. Biological psychiatry. Neuropsychiatry ; RC321-571 ; Neurology. Diseases of the nervous system ; RC346-429
    Subject code 610 ; 616
    Language English
    Publishing date 2016-01-01T00:00:00Z
    Publisher Medknow Publications
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article ; Online: Epidemiological & clinical characteristics & early outcome of COVID-19 patients in a tertiary care teaching hospital in India

    Baidya, DalimKumar / Kayina, ChoroAthiphro / Haritha, Damarla / Soni, Lipika / Behera, Srikant / Nair, ParvathyRamachandran / Gouri, M / Girish, Kavitha / Deeparaj, L / Maitra, Souvik / Anand, RahulKumar / Ray, BikashRanjan / Subramaniam, Rajeshwari

    Indian Journal of Medical Research

    A preliminary analysis

    2020  Volume 152, Issue 1, Page(s) 100

    Keywords General Biochemistry, Genetics and Molecular Biology ; General Medicine ; covid19
    Language English
    Publisher Medknow
    Publishing country in
    Document type Article ; Online
    ZDB-ID 390883-5
    ISSN 0019-5340 ; 0971-5916
    ISSN 0019-5340 ; 0971-5916
    DOI 10.4103/ijmr.ijmr_2890_20
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: Characterization and Whole Genome Sequencing of Chromobacterium violaceum OUAT_2017: A Zoonotic Pathogen Found Fatal to a Wild Asiatic Elephant

    Hota, Sourav R. / Padhi, Soumesh K. / Pahari, Avishek / Behera, Bikash K. / Panda, Biswaranjan / Mor, Sunil K. / Singh, Vikash K. / Goyal, Sagar M. / Sahoo, Niranjana

    Indian J Microbiol. 2022 Dec., v. 62, no. 4 p.627-633

    2022  

    Abstract: ... revealed 97% homology with C. violeceum. The bacterial genome composed of 64.87% of G + C content ... spectinomycin. Our findings corroborated the lethal effect of C. violeceum in a new host (elephant ...

    Abstract This study reports a rare fatal case of Chromobacterium violeceum OUAT_2017 strain infection in an Asiatic elephant calf in India. Necropsy revealed pus-filled nodules in liver, spleen, and lungs. Nutrient broth cultures of nodule content showed sediment of violet pigment whereas smooth, non-diffusible, violet-pigmented, homogeneous colonies appeared on nutrient agar. The organism was found to be non-haemolytic and resistant to 8 of the 24 antibiotics tested in vitro. Partial 16S rRNA gene sequence measuring 1410 bp revealed 97% homology with C. violeceum. The bacterial genome composed of 64.87% of G + C content with total size of 4,681,202 bp. The genome annotation has 42 genes responsible for multidrug antibiotic resistance with the presence of Aminoglycoside-modifying enzymes (AAC (6’)) that targets streptomycin and spectinomycin. Our findings corroborated the lethal effect of C. violeceum in a new host (elephant) that enriched scientific information on epidemiological picture and whole genome sequencing as well.
    Keywords Chromobacterium violaceum ; agar ; antibiotic resistance ; calves ; genome ; liver ; necropsy ; nucleotide sequences ; pathogens ; sediments ; spectinomycin ; spleen ; streptomycin ; India
    Language English
    Dates of publication 2022-12
    Size p. 627-633.
    Publishing place Springer India
    Document type Article ; Online
    ZDB-ID 413422-9
    ISSN 0973-7715 ; 0046-8991
    ISSN (online) 0973-7715
    ISSN 0046-8991
    DOI 10.1007/s12088-022-01047-4
    Database NAL-Catalogue (AGRICOLA)

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  10. Article: Reduction of hexavalent chromium by Exiguobacterium mexicanum isolated from chromite mines soil

    Das, Sasmita / Chandra Behera, Bikash / Mohapatra, Ranjan Kumar / Pradhan, Biswaranjan / Sudarshan, Mathummal / Chakraborty, Anindita / Thatoi, Hrudayanath

    Chemosphere. 2021 Nov., v. 282

    2021  

    Abstract: ... the strain (CWB-54) was identified as Exiguobacterium mexicanum. When this bacterium was grown at 35 °C, 100 ...

    Abstract Hexavalent chromium is a highly toxic element generated due to indiscriminate chromite mining in Sukinda, Odisha. In the present research investigation a relatively higher Cr(VI) resistant (900 mg L⁻¹) bacterium CWB-54 was isolated from the chromite mine water. Based on the biochemical and molecular analysis the strain (CWB-54) was identified as Exiguobacterium mexicanum. When this bacterium was grown at 35 °C, 100 rpm, pH~8.0, and fructose as an electron donor, it could reduce the total hexavalent chromium (100 mg L⁻¹) supplemented in the medium within 33 h of incubation period. Though experiment was carried out to study the effect of Mn, Ni, Cd, Hg and Zn on Cr(VI) reduction by the strain E. mexicanum it has been observed that in the presence of Cd and Hg, Cr(VI) reduction drastically decreased. Characterization of Cr(VI) reduced product by SEM-EDX and TEM analysis revealed intracellular and extracellular Cr(III) deposition in the bacterium, which is assumed to be Cr(OH)3 precipitate in nanometric size. But the extracellular chromate reductase enzyme production is found to be negligible as compared to the intracellular enzyme production. The increased concentration of Cr(VI) above (1000 mg L⁻¹) also showed the genotoxic effect on the DNA. Several reports have been published on Exiguobacterium sp. on different scientific aspect but the current report on the reduction of toxic Cr(VI) by a new species E. mexicanum is a novel one which established the potentiality of this microorganism for a broad area of application.
    Keywords DNA ; Exiguobacterium ; bacteria ; chromates ; chromium ; fructose ; genotoxicity ; intracellular enzymes ; new species ; oxidoreductases ; soil
    Language English
    Dates of publication 2021-11
    Publishing place Elsevier Ltd
    Document type Article
    Note NAL-AP-2-clean
    ZDB-ID 120089-6
    ISSN 1879-1298 ; 0045-6535 ; 0366-7111
    ISSN (online) 1879-1298
    ISSN 0045-6535 ; 0366-7111
    DOI 10.1016/j.chemosphere.2021.131135
    Database NAL-Catalogue (AGRICOLA)

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