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  1. Article: Human CENP-H multimers colocalize with CENP-A and CENP-C at active centromere--kinetochore complexes.

    Sugata, N / Li, S / Earnshaw, W C / Yen, T J / Yoda, K / Masumoto, H / Munekata, E / Warburton, P E / Todokoro, K

    Human molecular genetics

    2000  Volume 9, Issue 19, Page(s) 2919–2926

    Abstract: ... CENP-A and CENP-C in both interphase and metaphase. CENP-H was present outside centromeric ... that the CENP-H binds to itself and MCAK, but not to CENP-A, CENP-B or CENP-C. CENP-H multimers were observed ... the isolation and characterization of human CENP-H. Confocal microscopic analyses of HeLa cells with anti-human ...

    Abstract Centromere and kinetochore proteins have a pivotal role in centromere structure, kinetochore formation and sister chromatid separation. However, the molecular architecture and the precise dynamic function of the centromere-kinetochore complex during mitosis remain poorly understood. Here we report the isolation and characterization of human CENP-H. Confocal microscopic analyses of HeLa cells with anti-human CENP-H-specific antibody demonstrated that CENP-H colocalizes with inner kinetochore plate proteins CENP-A and CENP-C in both interphase and metaphase. CENP-H was present outside centromeric heterochromatin, where CENP-B is localized, and inside the kinetochore corona, where CENP-E is localized during prometaphase. Furthermore, CENP-H was detected at neocentromeres, but not at inactive centromeres in stable dicentric chromosomes. In vitro binding assays of human CENP-H with centromere-kinetochore proteins suggest that the CENP-H binds to itself and MCAK, but not to CENP-A, CENP-B or CENP-C. CENP-H multimers were observed in cells in which both FLAG-tagged CENP-H and hemagglutinin-tagged CENP-H were expressed. These results suggest that CENP-H multimers localize constitutively to the inner kinetochore plate and play an important fundamental role in organization and function of the active human centromere-kinetochore complex.
    MeSH term(s) Amino Acid Sequence ; Autoantigens ; Centromere/metabolism ; Centromere Protein A ; Chromosomal Proteins, Non-Histone/chemistry ; Chromosomal Proteins, Non-Histone/genetics ; Chromosomal Proteins, Non-Histone/metabolism ; Cloning, Molecular ; Fluorescent Antibody Technique ; HeLa Cells ; Humans ; In Situ Hybridization, Fluorescence ; Kinetochores/metabolism ; Macromolecular Substances ; Microscopy, Fluorescence ; Mitosis ; Molecular Sequence Data ; Protein Binding ; Recombinant Fusion Proteins/metabolism ; Sequence Alignment
    Chemical Substances Autoantigens ; CENPA protein, human ; CENPH protein, human ; Centromere Protein A ; Chromosomal Proteins, Non-Histone ; Macromolecular Substances ; Recombinant Fusion Proteins ; centromere protein C
    Language English
    Publishing date 2000-11-22
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 1108742-0
    ISSN 1460-2083 ; 0964-6906
    ISSN (online) 1460-2083
    ISSN 0964-6906
    DOI 10.1093/hmg/9.19.2919
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Head-to-tail cyclization of side chain-protected linear peptides to recapitulate genetically-encoded cyclized peptides.

    Bouayad-Gervais, Samir / St-Cyr, Daniel J / Courcelles, Mathieu / Bonneil, Éric / Gohard, Florence H / Thibault, Pierre / Earnshaw, William C / Tyers, Mike

    Peptide science (Hoboken, N.J.)

    2022  Volume 114, Issue 3, Page(s) e24254

    Abstract: Genetically-encoded cyclic peptide libraries allow ... ...

    Abstract Genetically-encoded cyclic peptide libraries allow rapid
    Language English
    Publishing date 2022-01-06
    Publishing country United States
    Document type Journal Article
    ISSN 2475-8817
    ISSN (online) 2475-8817
    DOI 10.1002/pep2.24254
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Actively transcribed rDNA and distal junction (DJ) sequence are involved in association of NORs with nucleoli.

    Liskovykh, Mikhail / Petrov, Nikolai S / Noskov, Vladimir N / Masumoto, Hiroshi / Earnshaw, William C / Schlessinger, David / Shabalina, Svetlana A / Larionov, Vladimir / Kouprina, Natalay

    Cellular and molecular life sciences : CMLS

    2023  Volume 80, Issue 5, Page(s) 121

    Abstract: Although they are organelles without a limiting membrane, nucleoli have an exclusive structure, built upon the rDNA-rich acrocentric short arms of five human chromosomes (nucleolar organizer regions or NORs). This has raised the question: what are the ... ...

    Abstract Although they are organelles without a limiting membrane, nucleoli have an exclusive structure, built upon the rDNA-rich acrocentric short arms of five human chromosomes (nucleolar organizer regions or NORs). This has raised the question: what are the structural features of a chromosome required for its inclusion in a nucleolus? Previous work has suggested that sequences adjacent to the tandemly repeated rDNA repeat units (DJ, distal junction sequence) may be involved, and we have extended such studies by addressing several issues related to the requirements for the association of NORs with nucleoli. We exploited both a set of somatic cell hybrids containing individual human acrocentric chromosomes and a set of Human Artificial Chromosomes (HACs) carrying different parts of a NOR, including an rDNA unit or DJ or PJ (proximal junction) sequence. Association of NORs with nucleoli was increased when constituent rDNA was transcribed and may be also affected by the status of heterochromatin blocks formed next to the rDNA arrays. Furthermore, our data suggest that a relatively small size DJ region, highly conserved in evolution, is also involved, along with the rDNA repeats, in the localization of p-arms of acrocentric chromosomes in nucleoli. Thus, we infer a cooperative action of rDNA sequence-stimulated by its activity-and sequences distal to rDNA contributing to incorporation into nucleoli. Analysis of NOR sequences also identified LncRNA_038958 in the DJ, a candidate transcript with the region of the suggested promoter that is located close to the DJ/rDNA boundary and contains CTCF binding sites. This LncRNA may affect RNA Polymerase I and/or nucleolar activity. Our findings provide the basis for future studies to determine which RNAs and proteins interact critically with NOR sequences to organize the higher-order structure of nucleoli and their function in normal cells and pathological states.
    MeSH term(s) Humans ; Nucleolus Organizer Region/genetics ; Nucleolus Organizer Region/metabolism ; DNA, Ribosomal/genetics ; RNA, Long Noncoding/metabolism ; Cell Nucleolus/genetics ; Cell Nucleolus/metabolism ; Chromosomes, Human/metabolism
    Chemical Substances DNA, Ribosomal ; RNA, Long Noncoding
    Language English
    Publishing date 2023-04-12
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 1358415-7
    ISSN 1420-9071 ; 1420-682X
    ISSN (online) 1420-9071
    ISSN 1420-682X
    DOI 10.1007/s00018-023-04770-3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Reduction in skin cancer diagnosis, and overall cancer referrals, during the COVID-19 pandemic.

    Earnshaw, C H / Hunter, H J A / McMullen, E / Griffiths, C E M / Warren, R B

    The British journal of dermatology

    2020  Volume 183, Issue 4, Page(s) 792–794

    MeSH term(s) Betacoronavirus/isolation & purification ; COVID-19 ; Coronavirus Infections/epidemiology ; Coronavirus Infections/prevention & control ; Coronavirus Infections/transmission ; Coronavirus Infections/virology ; Humans ; Infection Control/standards ; Pandemics/prevention & control ; Patient Acceptance of Health Care/statistics & numerical data ; Pneumonia, Viral/epidemiology ; Pneumonia, Viral/prevention & control ; Pneumonia, Viral/transmission ; Pneumonia, Viral/virology ; Referral and Consultation/standards ; Referral and Consultation/statistics & numerical data ; Referral and Consultation/trends ; SARS-CoV-2 ; Skin Neoplasms/diagnosis ; Skin Neoplasms/epidemiology ; State Medicine/statistics & numerical data ; United Kingdom/epidemiology
    Keywords covid19
    Language English
    Publishing date 2020-07-02
    Publishing country England
    Document type Letter ; Research Support, Non-U.S. Gov't
    ZDB-ID 80076-4
    ISSN 1365-2133 ; 0007-0963
    ISSN (online) 1365-2133
    ISSN 0007-0963
    DOI 10.1111/bjd.19267
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Rules of engagement for condensins and cohesins guide mitotic chromosome formation.

    Samejima, Kumiko / Gibcus, Johan H / Abraham, Sameer / Cisneros-Soberanis, Fernanda / Samejima, Itaru / Beckett, Alison J / Pucekova, Nina / Abad, Maria Alba / Medina-Pritchard, Bethan / Paulson, James R / Xie, Linfeng / Jeyaprakash, A Arockia / Prior, Ian A / Mirny, Leonid A / Dekker, Job / Goloborodko, Anton / Earnshaw, William C

    bioRxiv : the preprint server for biology

    2024  

    Abstract: ... Using Hi-C, imaging, proteomics and polymer modeling, we determine how the activity and interplay ... freely pass one another but stall upon encountering each other. The dynamics of Hi-C interactions and ...

    Abstract During mitosis, interphase chromatin is rapidly converted into rod-shaped mitotic chromosomes. Using Hi-C, imaging, proteomics and polymer modeling, we determine how the activity and interplay between loop-extruding SMC motors accomplishes this dramatic transition. Our work reveals rules of engagement for SMC complexes that are critical for allowing cells to refold interphase chromatin into mitotic chromosomes. We find that condensin disassembles interphase chromatin loop organization by evicting or displacing extrusive cohesin. In contrast, condensin bypasses cohesive cohesins, thereby maintaining sister chromatid cohesion while separating the sisters. Studies of mitotic chromosomes formed by cohesin, condensin II and condensin I alone or in combination allow us to develop new models of mitotic chromosome conformation. In these models, loops are consecutive and not overlapping, implying that condensins do not freely pass one another but stall upon encountering each other. The dynamics of Hi-C interactions and chromosome morphology reveal that during prophase loops are extruded in vivo at ~1-3 kb/sec by condensins as they form a disordered discontinuous helical scaffold within individual chromatids.
    Language English
    Publishing date 2024-04-30
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2024.04.18.590027
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Combination of CENP-B Box Positive and Negative Synthetic Alpha Satellite Repeats Improves De Novo Human Artificial Chromosome Formation.

    Okazaki, Koei / Nakano, Megumi / Ohzeki, Jun-Ichirou / Otake, Koichiro / Kugou, Kazuto / Larionov, Vladimir / Earnshaw, William C / Masumoto, Hiroshi

    Cells

    2022  Volume 11, Issue 9

    Abstract: Human artificial chromosomes (HACs) can be formed de novo by introducing large (>30 kb) centromeric sequences consisting of highly repeated 171-bp alpha satellite (alphoid) DNA into HT1080 cells. However, only a subset of transformed cells successfully ... ...

    Abstract Human artificial chromosomes (HACs) can be formed de novo by introducing large (>30 kb) centromeric sequences consisting of highly repeated 171-bp alpha satellite (alphoid) DNA into HT1080 cells. However, only a subset of transformed cells successfully establishes HACs. CENP-A chromatin and heterochromatin assemble on the HACs and play crucial roles in chromosome segregation. The CENP-B protein, which binds a 17-bp motif (CENP-B box) in the alphoid DNA, functions in the formation of alternative CENP-A chromatin or heterochromatin states. A balance in the coordinated assembly of these chromatin states on the introduced alphoid DNA is important for HAC formation. To obtain information about the relationship between chromatin architecture and de novo HAC formation efficiency, we tested combinations of two 60-kb synthetic alphoid sequences containing either tetO or lacO plus a functional or mutated CENP-B box combined with a multiple fusion protein tethering system. The combination of mutated and wild-type CENP-B box alphoid repeats significantly enhanced HAC formation. Both CENP-A and HP1α were enriched in the wild-type alphoid DNA, whereas H3K27me3 was enriched on the mutant alphoid array. The presence or absence of CENP-B binding resulted in differences in the assembly of CENP-A chromatin on alphoid arrays and the formation of H3K9me3 or H3K27me3 heterochromatin.
    MeSH term(s) Centromere Protein A/genetics ; Centromere Protein B/genetics ; Chromatin ; Chromosomes, Artificial, Human ; DNA ; Heterochromatin ; Histones/metabolism ; Humans
    Chemical Substances CENPB protein, human ; Centromere Protein A ; Centromere Protein B ; Chromatin ; Heterochromatin ; Histones ; DNA (9007-49-2)
    Language English
    Publishing date 2022-04-19
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Intramural
    ZDB-ID 2661518-6
    ISSN 2073-4409 ; 2073-4409
    ISSN (online) 2073-4409
    ISSN 2073-4409
    DOI 10.3390/cells11091378
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Cost-Effectiveness of Blood-Based Brain Biomarkers for Screening Adults with Mild Traumatic Brain Injury in the French Health Care Setting.

    Zimmer, Louise / McDade, Cheryl / Beyhaghi, Hadi / Purser, Molly / Textoris, Julien / Krause, Alexander / Blanc, Esther / Pavlov, Vladislav / Earnshaw, Stephanie

    Journal of neurotrauma

    2022  Volume 40, Issue 7-8, Page(s) 706–719

    Abstract: ... and ubiquitin C-terminal hydrolase-L1 (GFAP+UCH-L1) or S100B have potential to reduce the need ...

    Abstract Two blood-based brain biomarker tests such as the combination of glial fibrillary acidic protein and ubiquitin C-terminal hydrolase-L1 (GFAP+UCH-L1) or S100B have potential to reduce the need for head computed tomography (CT) scanning in patients with mild traumatic brain injury (mTBI). We assessed the clinical and economic impact of using GFAP+UCH-L1 versus CT scan and GFAP+UCH-L1 versus S100B to screen adults with suspected mTBI presenting to an emergency department (ED). A decision model was developed to estimate costs and health outcomes of GFAP+UCH-L1, CT scan, and S100B associated with these screening protocols. Model parameters were extracted from peer-reviewed articles, clinical guidelines, and expert opinion. Analysis was performed from a French health care system perspective (costs in 2020 euros). In the model, patients with a positive biomarker receive a CT scan to confirm the presence of intracranial lesions (ICLs). Depending on clinical state and biomarker and CT results, patients were discharged immediately, kept for observation in the ED, admitted for in-hospital stay and observation, or admitted for surgical management. Incorrect test results may lead to delayed treatment and poor outcomes or overtreatment. GFAP+UCH-L1 use was associated with an overall decrease in CT scans when compared with CT screening or S100B use (325.42 and 46.43 CTs per 1000 patients, respectively). The use of GFAP+UCH-L1 resulted in modest cost savings when compared with CT scanning and with S100B. In all cases, use of GFAP+UCH-L1 marginally improved quality-adjusted life-years (QALYs) and outcomes. Thus, screening with GFAP+UCH-L1 reduced the need for CT scans when compared with systematic CT scan screening or use of S100B while maintaining similar costs and health outcomes.
    MeSH term(s) Adult ; Humans ; Brain Concussion/diagnostic imaging ; Cost-Benefit Analysis ; Ubiquitin Thiolesterase ; Brain Injuries, Traumatic/diagnosis ; Biomarkers ; Brain ; Glial Fibrillary Acidic Protein
    Chemical Substances Ubiquitin Thiolesterase (EC 3.4.19.12) ; Biomarkers ; Glial Fibrillary Acidic Protein
    Language English
    Publishing date 2022-11-28
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 645092-1
    ISSN 1557-9042 ; 0897-7151
    ISSN (online) 1557-9042
    ISSN 0897-7151
    DOI 10.1089/neu.2022.0270
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  8. Article ; Online: De novo formation and epigenetic maintenance of centromere chromatin.

    Ohzeki, Junichirou / Larionov, Vladimir / Earnshaw, William C / Masumoto, Hiroshi

    Current opinion in cell biology

    2019  Volume 58, Page(s) 15–25

    Abstract: Accurate chromosome segregation is essential for cell proliferation. The centromere is a specialized chromosomal locus, on which the kinetochore structure is formed. The centromere/kinetochore is required for the equal separation of sister chromatids to ... ...

    Abstract Accurate chromosome segregation is essential for cell proliferation. The centromere is a specialized chromosomal locus, on which the kinetochore structure is formed. The centromere/kinetochore is required for the equal separation of sister chromatids to daughter cells. Here, we review recent findings on centromere-specific chromatin, including its constitutive protein components, its de novo formation and maintenance mechanisms, and our progress in analyses with synthetic human artificial chromosomes (HACs).
    MeSH term(s) Animals ; Centromere/chemistry ; Centromere/metabolism ; Chromatin/chemistry ; Chromatin/metabolism ; Chromosomal Proteins, Non-Histone/metabolism ; Chromosome Segregation ; Epigenesis, Genetic ; Heterochromatin ; Humans ; Kinetochores/chemistry ; Kinetochores/metabolism
    Chemical Substances Chromatin ; Chromosomal Proteins, Non-Histone ; Heterochromatin
    Language English
    Publishing date 2019-01-15
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Intramural ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 1026381-0
    ISSN 1879-0410 ; 0955-0674
    ISSN (online) 1879-0410
    ISSN 0955-0674
    DOI 10.1016/j.ceb.2018.12.004
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  9. Article ; Online: Surgical innovation.

    Dejong, C H C / Earnshaw, J J

    The British journal of surgery

    2015  Volume 102, Issue 2, Page(s) e8–9

    MeSH term(s) Humans ; Inventions/trends ; Surgical Procedures, Operative/trends ; Therapies, Investigational/trends
    Language English
    Publishing date 2015-01
    Publishing country England
    Document type Journal Article
    ZDB-ID 2985-3
    ISSN 1365-2168 ; 0263-1202 ; 0007-1323 ; 1355-7688
    ISSN (online) 1365-2168
    ISSN 0263-1202 ; 0007-1323 ; 1355-7688
    DOI 10.1002/bjs.9727
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Reduction in skin cancer diagnosis, and overall cancer referrals, during the COVID-19 pandemic

    Earnshaw, C H / Hunter, H J A / McMullen, E / Griffiths, C E M / Warren, R B

    Br J Dermatol

    Keywords covid19
    Publisher WHO
    Document type Article
    Note WHO #Covidence: #526577
    Database COVID19

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