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  1. Article ; Online: Cockroach allergy: Understanding complex immune responses to develop novel therapies.

    Pomés, Anna / Arruda, L Karla

    Molecular immunology

    2023  Volume 156, Page(s) 157–169

    Abstract: Cockroach allergy is associated with the development of asthma. The identification of cockroach allergens, which began in the 1990 s, is an ongoing process that has led to the current listing of 20 official allergen groups in the WHO/IUIS Allergen ... ...

    Abstract Cockroach allergy is associated with the development of asthma. The identification of cockroach allergens, which began in the 1990 s, is an ongoing process that has led to the current listing of 20 official allergen groups in the WHO/IUIS Allergen Nomenclature database. The function and structure of some of these allergens has been determined and define their natural delivery into the environment and their allergenicity. Analysis of antigenic determinants by X-ray crystallography and rational design of site-directed mutagenesis led to the identification of IgE binding sites for the design of molecules with reduced IgE reactivity and T cell modulatory capacity. New developments in recent years include component analyses of B and T cell reactivity and a recent cockroach immunotherapy trial, CRITICAL, that will contribute to understand the immune response to cockroach and to define future directions for cockroach allergy diagnosis and immunotherapy.
    MeSH term(s) Animals ; Immunoglobulin E ; Allergens ; Asthma/therapy ; Cockroaches ; Immunity
    Chemical Substances Immunoglobulin E (37341-29-0) ; Allergens
    Language English
    Publishing date 2023-03-15
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 424427-8
    ISSN 1872-9142 ; 0161-5890
    ISSN (online) 1872-9142
    ISSN 0161-5890
    DOI 10.1016/j.molimm.2023.03.001
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  2. Article ; Online: Precision engineering for localization, validation, and modification of allergenic epitopes.

    Pomés, Anna / Smith, Scott A / Chruszcz, Maksymilian / Mueller, Geoffrey A / Brackett, Nicole F / Chapman, Martin D

    The Journal of allergy and clinical immunology

    2024  Volume 153, Issue 3, Page(s) 560–571

    Abstract: The allergen-IgE interaction is essential for the genesis of allergic responses, yet investigation of the molecular basis of these interactions is in its infancy. Precision engineering has unveiled the molecular features of allergen-antibody interactions ...

    Abstract The allergen-IgE interaction is essential for the genesis of allergic responses, yet investigation of the molecular basis of these interactions is in its infancy. Precision engineering has unveiled the molecular features of allergen-antibody interactions at the atomic level. High-resolution technologies, including x-ray crystallography, nuclear magnetic resonance spectroscopy, and cryo-electron microscopy, determine allergen-antibody structures. X-ray crystallography of an allergen-antibody complex localizes in detail amino acid residues and interactions that define the epitope-paratope interface. Multiple structures involving murine IgG mAbs have recently been resolved. The number of amino acids forming the epitope broadly correlates with the epitope area. The production of human IgE mAbs from B cells of allergic subjects is an exciting recent development that has for the first time enabled an actual IgE epitope to be defined. The biologic activity of defined IgE epitopes can be validated in vivo in animal models or by measuring mediator release from engineered basophilic cell lines. Finally, gene-editing approaches using the Clustered Regularly Interspaced Short Palindromic Repeats technology to either remove allergen genes or make targeted epitope engineering at the source are on the horizon. This review presents an overview of the identification and validation of allergenic epitopes by precision engineering.
    MeSH term(s) Mice ; Humans ; Animals ; Allergens ; Epitopes ; Plant Proteins ; Cryoelectron Microscopy ; Amino Acid Sequence ; Immunoglobulin E ; Antibodies, Monoclonal
    Chemical Substances Allergens ; Epitopes ; Plant Proteins ; Immunoglobulin E (37341-29-0) ; Antibodies, Monoclonal
    Language English
    Publishing date 2024-01-03
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 121011-7
    ISSN 1097-6825 ; 1085-8725 ; 0091-6749
    ISSN (online) 1097-6825 ; 1085-8725
    ISSN 0091-6749
    DOI 10.1016/j.jaci.2023.12.017
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  3. Article ; Online: New Frontiers: Precise Editing of Allergen Genes Using CRISPR.

    Brackett, Nicole F / Pomés, Anna / Chapman, Martin D

    Frontiers in allergy

    2022  Volume 2, Page(s) 821107

    Abstract: Genome engineering with clustered regularly interspaced short palindromic repeats (CRISPR) technology offers the unique potential for unequivocally deleting allergen genes at the source. Compared to prior gene editing approaches, CRISPR boasts ... ...

    Abstract Genome engineering with clustered regularly interspaced short palindromic repeats (CRISPR) technology offers the unique potential for unequivocally deleting allergen genes at the source. Compared to prior gene editing approaches, CRISPR boasts substantial improvements in editing efficiency, throughput, and precision. CRISPR has demonstrated success in several clinical applications such as sickle cell disease and β-thalassemia, and preliminary knockout studies of allergenic proteins using CRISPR editing show promise. Given the advantages of CRISPR, as well as specific DNA targets in the allergen genes, CRISPR gene editing is a viable approach for tackling allergy, which may lead to significant disease improvement. This review will highlight recent applications of CRISPR editing of allergens, particularly cat allergen Fel d 1, and will discuss the advantages and limitations of this approach compared to existing treatment options.
    Language English
    Publishing date 2022-01-17
    Publishing country Switzerland
    Document type Journal Article ; Review
    ISSN 2673-6101
    ISSN (online) 2673-6101
    DOI 10.3389/falgy.2021.821107
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Cross-reactivity in allergy: A double-edged sword.

    Pomés, Anna / Schulten, Véronique

    Allergy

    2019  Volume 75, Issue 1, Page(s) 9–11

    MeSH term(s) Adaptive Immunity/immunology ; Ambrosia/immunology ; Cross Reactions ; Humans ; Hypersensitivity, Immediate/immunology
    Language English
    Publishing date 2019-05-08
    Publishing country Denmark
    Document type Editorial ; Research Support, N.I.H., Extramural
    ZDB-ID 391933-x
    ISSN 1398-9995 ; 0105-4538
    ISSN (online) 1398-9995
    ISSN 0105-4538
    DOI 10.1111/all.13993
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  5. Article ; Online: Human Monoclonal IgE Antibodies-a Major Milestone in Allergy.

    Smith, Scott A / Chruszcz, Maksymilian / Chapman, Martin D / Pomés, Anna

    Current allergy and asthma reports

    2022  Volume 23, Issue 1, Page(s) 53–65

    Abstract: Purpose of review: Bound to its high affinity receptor on mast cells and basophils, the IgE antibody molecule plays an integral role in the allergic reaction. Through interactions with the allergen, it provides the sensitivity and specificity parameters ...

    Abstract Purpose of review: Bound to its high affinity receptor on mast cells and basophils, the IgE antibody molecule plays an integral role in the allergic reaction. Through interactions with the allergen, it provides the sensitivity and specificity parameters for cell activation and mediator release that produce allergic symptoms. Advancements in human hybridoma technologies allow for the generation and molecular definition of naturally occurring allergen-specific human IgE monoclonal antibodies.
    Recent findings: A high-resolution structure of dust mite allergen Der p 2 in complex with Fab of the human IgE mAb 2F10 was recently determined using X-ray crystallography. The structure reveals the fine molecular details of IgE 2F10 binding its 750 Å
    MeSH term(s) Humans ; Immunoglobulin E ; Hypersensitivity ; Antibodies, Monoclonal/therapeutic use ; Epitopes/chemistry ; Allergens
    Chemical Substances Immunoglobulin E (37341-29-0) ; Antibodies, Monoclonal ; Epitopes ; Allergens
    Language English
    Publishing date 2022-12-02
    Publishing country United States
    Document type Journal Article ; Review ; Research Support, N.I.H., Extramural
    ZDB-ID 2057370-4
    ISSN 1534-6315 ; 1529-7322
    ISSN (online) 1534-6315
    ISSN 1529-7322
    DOI 10.1007/s11882-022-01055-w
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  6. Article ; Online: Structural Aspects of the Allergen-Antibody Interaction.

    Pomés, Anna / Mueller, Geoffrey A / Chruszcz, Maksymilian

    Frontiers in immunology

    2020  Volume 11, Page(s) 2067

    Abstract: The development of allergic disease involves the production of IgE antibodies upon allergen exposure in a process called sensitization. IgE binds to receptors on the surface of mast cells and basophils, and subsequent allergen exposure leads to cross- ... ...

    Abstract The development of allergic disease involves the production of IgE antibodies upon allergen exposure in a process called sensitization. IgE binds to receptors on the surface of mast cells and basophils, and subsequent allergen exposure leads to cross-linking of IgE antibodies and release of cell mediators that cause allergy symptoms. Although this process is quite well-understood, very little is known about the epitopes on the allergen recognized by IgE, despite the importance of the allergen-antibody interaction for the allergic response to occur. This review discusses efforts to analyze allergen-antibody interactions, from the original epitope mapping studies using linear peptides or recombinant allergen fragments, to more sophisticated technologies, such as X-ray crystallography and nuclear magnetic resonance. These state-of-the-art approaches, combined with site-directed mutagenesis, have led to the identification of conformational IgE epitopes. The first structures of an allergen (egg lysozyme) in complex with Fab fragments from IgG antibodies were determined in the 1980s. Since then, IgG has been used as surrogate for IgE, due to the difficulty of obtaining monoclonal IgE antibodies. Technical developments including phage display libraries have contributed to progress in epitope mapping thanks to the isolation of IgE antibody constructs from combinatorial libraries made from peripheral blood mononuclear cells of allergic donors. Most recently, single B cell antibody sequencing and human hybridomas are new breakthrough technologies for finally obtaining human IgE monoclonal antibodies, ideal for epitope mapping. The information on antigenic determinants will facilitate the design of hypoallergens for immunotherapy and the investigation of the fundamental mechanisms of the IgE response.
    MeSH term(s) Allergens/chemistry ; Allergens/immunology ; Animals ; Antibodies/chemistry ; Antibodies/immunology ; Antigen-Antibody Complex/chemistry ; Antigen-Antibody Complex/immunology ; Antigen-Antibody Reactions/immunology ; Crystallography, X-Ray ; Epitope Mapping/methods ; Epitopes/immunology ; Humans ; Immunoglobulin E/immunology ; Magnetic Resonance Spectroscopy ; Models, Molecular ; Protein Binding ; Structure-Activity Relationship
    Chemical Substances Allergens ; Antibodies ; Antigen-Antibody Complex ; Epitopes ; Immunoglobulin E (37341-29-0)
    Keywords covid19
    Language English
    Publishing date 2020-09-02
    Publishing country Switzerland
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 2606827-8
    ISSN 1664-3224 ; 1664-3224
    ISSN (online) 1664-3224
    ISSN 1664-3224
    DOI 10.3389/fimmu.2020.02067
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  7. Article ; Online: Quantification of peanut allergens across recalled and nonrecalled lots of diagnostic peanut extracts.

    Stone, Cosby A / Hemler, Jonathan A / Filep, Stephanie / Braden, Karen / Pomés, Anna / Chapman, Martin D / Smith, Scott A

    The journal of allergy and clinical immunology. In practice

    2023  Volume 11, Issue 11, Page(s) 3547–3549.e1

    MeSH term(s) Humans ; Allergens ; Arachis ; Antigens, Plant ; Plant Proteins ; Peanut Hypersensitivity/diagnosis
    Chemical Substances Allergens ; Antigens, Plant ; Plant Proteins
    Language English
    Publishing date 2023-07-17
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2843237-X
    ISSN 2213-2201 ; 2213-2198
    ISSN (online) 2213-2201
    ISSN 2213-2198
    DOI 10.1016/j.jaip.2023.07.015
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  8. Article ; Online: Evolutionary Biology and Gene Editing of Cat Allergen, Fel d 1.

    Brackett, Nicole F / Davis, Brian W / Adli, Mazhar / Pomés, Anna / Chapman, Martin D

    The CRISPR journal

    2022  Volume 5, Issue 2, Page(s) 213–223

    Abstract: Allergy to domestic cat affects up to 15% of the population, and sensitization to cat allergen is associated with asthma. Despite the pervasiveness of cat allergic disease, current treatments have limited impact. Here, we present a bioinformatics ... ...

    Abstract Allergy to domestic cat affects up to 15% of the population, and sensitization to cat allergen is associated with asthma. Despite the pervasiveness of cat allergic disease, current treatments have limited impact. Here, we present a bioinformatics analysis of the major cat allergen, Fel d 1, and demonstrate proof of principle for CRISPR gene editing of the allergen. Sequence and structural analyses of Fel d 1 from 50 domestic cats identified conserved coding regions in genes
    MeSH term(s) Allergens/chemistry ; Allergens/genetics ; Animals ; Biology ; CRISPR-Cas Systems/genetics ; Cats ; Gene Editing ; Glycoproteins/chemistry ; Glycoproteins/genetics ; Hypersensitivity/genetics ; Hypersensitivity/therapy
    Chemical Substances Allergens ; Glycoproteins
    Language English
    Publishing date 2022-03-28
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 3017891-5
    ISSN 2573-1602 ; 2573-1599
    ISSN (online) 2573-1602
    ISSN 2573-1599
    DOI 10.1089/crispr.2021.0101
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  9. Article ; Online: Structural and ligand binding analysis of the pet allergens Can f 1 and Fel d 7.

    Min, Jungki / Foo, Alexander C Y / Gabel, Scott A / Perera, Lalith / DeRose, Eugene F / Pomés, Anna / Pedersen, Lars C / Mueller, Geoffrey A

    Frontiers in allergy

    2023  Volume 4, Page(s) 1133412

    Abstract: Introduction: Pet lipocalins are respiratory allergens with a central hydrophobic ligand-binding cavity called a calyx. Molecules carried in the calyx by allergens are suggested to influence allergenicity, but little is known about the native ligands.!## ...

    Abstract Introduction: Pet lipocalins are respiratory allergens with a central hydrophobic ligand-binding cavity called a calyx. Molecules carried in the calyx by allergens are suggested to influence allergenicity, but little is known about the native ligands.
    Methods: To provide more information on prospective ligands, we report crystal structures, NMR, molecular dynamics, and florescence studies of a dog lipocalin allergen Can f 1 and its closely related (and cross-reactive) cat allergen Fel d 7.
    Results: Structural comparisons with reported lipocalins revealed that Can f 1 and Fel d 7 calyxes are open and positively charged while other dog lipocalin allergens are closed and negatively charged. We screened fatty acids as surrogate ligands, and found that Can f 1 and Fel d 7 bind multiple ligands with preferences for palmitic acid (16:0) among saturated fatty acids and oleic acid (18:1 cis-9) among unsaturated ones. NMR analysis of methyl probes reveals that conformational changes occur upon binding of pinolenic acid inside the calyx. Molecular dynamics simulation shows that the carboxylic group of fatty acids shuttles between two positively charged amino acids inside the Can f 1 and Fel d 7 calyx. Consistent with simulations, the stoichiometry of oleic acid-binding is 2:1 (fatty acid: protein) for Can f 1 and Fel d 7.
    Discussion: The results provide valuable insights into the determinants of selectivity and candidate ligands for pet lipocalin allergens Can f 1 and Fel d 7.
    Language English
    Publishing date 2023-03-07
    Publishing country Switzerland
    Document type Journal Article
    ISSN 2673-6101
    ISSN (online) 2673-6101
    DOI 10.3389/falgy.2023.1133412
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  10. Article ; Online: Relevant B cell epitopes in allergic disease.

    Pomés, Anna

    International archives of allergy and immunology

    2009  Volume 152, Issue 1, Page(s) 1–11

    Abstract: The 3-dimensional structure of an allergen defines the accessible parts on the surface of the molecule or epitopes that interact with antibodies. Mapping the antigenic determinants for IgE antibody binding has been pursued through strategies based on the ...

    Abstract The 3-dimensional structure of an allergen defines the accessible parts on the surface of the molecule or epitopes that interact with antibodies. Mapping the antigenic determinants for IgE antibody binding has been pursued through strategies based on the use of overlapping synthetic peptides, recombinant allergenic fragments or unfolded allergens. These approaches led to the identification of mostly linear epitopes and are useful for food allergens that undergo digestion or food processing. For inhaled allergens, conformational epitopes appear to be the primary targets of IgE responses. Knowledge of the molecular structure of allergens alone and in complex with antibodies that interfere with IgE antibody binding is important to understand the immune recognition of B cell-antigenic determinants on allergens and the design of recombinant allergens for immunotherapy. Starting with the molecular cloning and expression of allergens, and with the advent of X-ray crystallography and nuclear magnetic resonance techniques, we have been able to visualize conformational epitopes on allergens.
    MeSH term(s) Animals ; Aspartic Acid Endopeptidases/chemistry ; Aspartic Acid Endopeptidases/immunology ; Aspartic Acid Endopeptidases/metabolism ; Epitope Mapping ; Epitopes, B-Lymphocyte/chemistry ; Epitopes, B-Lymphocyte/immunology ; Humans ; Hypersensitivity/immunology ; Immunoglobulin Fab Fragments/chemistry ; Immunoglobulin Fab Fragments/immunology ; Immunoglobulin Fab Fragments/metabolism ; Models, Molecular
    Chemical Substances Epitopes, B-Lymphocyte ; Immunoglobulin Fab Fragments ; Aspartic Acid Endopeptidases (EC 3.4.23.-) ; allergen Bla g 2 (EC 3.4.23.-)
    Language English
    Publishing date 2009-11-26
    Publishing country Switzerland
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Review
    ZDB-ID 1108932-5
    ISSN 1423-0097 ; 1018-2438
    ISSN (online) 1423-0097
    ISSN 1018-2438
    DOI 10.1159/000260078
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