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  1. Article ; Online: Rationale and study design of the IRENE-trial (NVALT-16): a phase II trial to evaluate iressa rechallenge in advanced NSCLC patients with an activating EGFR mutation who responded to an EGFR-TKI used as first-line or previous treatment.

    Kuiper, Justine L / Heideman, Danielle A M / Würdinger, Tom / Grünberg, Katrien / Groen, Harry J M / Smit, Egbert F

    Clinical lung cancer

    2015  Volume 16, Issue 1, Page(s) 60–66

    Abstract: ... The IRENE (Iressa RE-challenge in advanced, EGFR-mutated NSCLC patients who responded to an EGFR-TKI used ... in blood platelets and analysis of cell-free DNA in blood plasma.: Results: The IRENE (NVALT-16) trial ...

    Abstract Background: Epidermal growth factor receptor (EGFR) tyrosine kinase inhibitors (TKIs) have shown improved progression-free survival (PFS) and overall survival (OS) over chemotherapy in a molecularly defined subgroup of advanced non-small-cell lung cancer (NSCLC) patients (ie, patients with an activating mutation in the EGFR gene). Nevertheless, all EGFR-mutated NSCLC patients develop TKI resistance eventually and there is no registered treatment or therapeutic strategy available for these patients. Several retrospective or small cohort studies have described patients who re-responded to EGFR-TKI treatment after a TKI-free interval ('drug holiday'). To date, no large prospective evaluation of the clinical effects of EGFR-TKI rechallenge in EGFR-mutated NSCLC patients has been performed.
    Patients and methods: The IRENE (Iressa RE-challenge in advanced, EGFR-mutated NSCLC patients who responded to an EGFR-TKI used as first-line or previous treatment) (Dutch association for pulmonologists [NVALT]-16) trial is a multicenter, open-label, single-arm, single-stage, phase II study to evaluate gefitinib rechallenge in EGFR-mutated NSCLC patients who were previously treated with a TKI followed by a subsequent line of treatment (excluding EGFR-TKIs). The primary objective is disease control rate according to Response Evaluation Criteria in Solid Tumors criteria. Secondary objectives are objective response rate, PFS, OS, mutation characterization of sequential biopsies, VeriStrat correlation to PFS and OS, analysis of tumor-derived RNA in blood platelets and analysis of cell-free DNA in blood plasma.
    Results: The IRENE (NVALT-16) trial will evaluate the safety, efficacy, and feasibility of readministration of gefitinib after an EGFR-TKI-free interval in EGFR-mutated NSCLC patients.
    Conclusion: The study will evaluate gefitinib re-challenge in EGFR-mutated NSCLC patients. The study will also provide more insight into the dynamic development of molecular characteristics of EGFR-mutated NSCLC along the course of the disease.
    MeSH term(s) Antineoplastic Protocols ; Carcinoma, Non-Small-Cell Lung/drug therapy ; Carcinoma, Non-Small-Cell Lung/mortality ; Clinical Trials as Topic ; Drug Resistance, Neoplasm ; Humans ; Lung Neoplasms/drug therapy ; Lung Neoplasms/mortality ; Mutation/genetics ; Prospective Studies ; Protein Kinase Inhibitors/administration & dosage ; Protein Kinase Inhibitors/adverse effects ; Quinazolines/administration & dosage ; Quinazolines/adverse effects ; Receptor, Epidermal Growth Factor/genetics ; Research Design ; Survival Analysis ; Withholding Treatment
    Chemical Substances Protein Kinase Inhibitors ; Quinazolines ; EGFR protein, human (EC 2.7.10.1) ; Receptor, Epidermal Growth Factor (EC 2.7.10.1) ; gefitinib (S65743JHBS)
    Language English
    Publishing date 2015-01
    Publishing country United States
    Document type Clinical Trial, Phase II ; Journal Article ; Multicenter Study
    ZDB-ID 2145146-1
    ISSN 1938-0690 ; 1525-7304
    ISSN (online) 1938-0690
    ISSN 1525-7304
    DOI 10.1016/j.cllc.2014.07.008
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Microbial forensics: next-generation sequencing as catalyst: The use of new sequencing technologies to analyze whole microbial communities could become a powerful tool for forensic and criminal investigations.

    Kuiper, Irene

    EMBO reports

    2016  Volume 17, Issue 8, Page(s) 1085–1087

    MeSH term(s) Bacteria/genetics ; Crime ; Forensic Genetics/methods ; High-Throughput Nucleotide Sequencing/methods ; Humans ; Microbiological Techniques/methods ; Microbiota/genetics
    Language English
    Publishing date 2016-06-20
    Publishing country England
    Document type Journal Article
    ZDB-ID 2020896-0
    ISSN 1469-3178 ; 1469-221X
    ISSN (online) 1469-3178
    ISSN 1469-221X
    DOI 10.15252/embr.201642794
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Corrigendum to "Sleep and sleep deprivation differentially alter white matter microstructure: A mixed model design utilising advanced diffusion modelling".

    Voldsbekk, Irene / Groote, Inge / Zak, Nathalia / Roelfs, Daniël / Geier, Oliver / Due-Tønnessen, Paulina / Løkken, Lise-Linn / Strømstad, Marie / Blakstvedt, Taran Y / Kuiper, Yvonne S / Elvsåshagen, Torbjørn / Westlye, Lars T / Bjørnerud, Atle / Maximov, Ivan I

    NeuroImage

    2023  Volume 270, Page(s) 119939

    Language English
    Publishing date 2023-02-24
    Publishing country United States
    Document type Published Erratum
    ZDB-ID 1147767-2
    ISSN 1095-9572 ; 1053-8119
    ISSN (online) 1095-9572
    ISSN 1053-8119
    DOI 10.1016/j.neuroimage.2023.119939
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Forensic Comparison of Soil Samples Using Nondestructive Elemental Analysis.

    Uitdehaag, Stefan / Wiarda, Wim / Donders, Timme / Kuiper, Irene

    Journal of forensic sciences

    2017  Volume 62, Issue 4, Page(s) 861–868

    Abstract: Soil can play an important role in forensic cases in linking suspects or objects to a crime scene by comparing samples from the crime scene with samples derived from items. This study uses an adapted ED-XRF analysis (sieving instead of grinding to ... ...

    Abstract Soil can play an important role in forensic cases in linking suspects or objects to a crime scene by comparing samples from the crime scene with samples derived from items. This study uses an adapted ED-XRF analysis (sieving instead of grinding to prevent destruction of microfossils) to produce elemental composition data of 20 elements. Different data processing techniques and statistical distances were evaluated using data from 50 samples and the log-LR cost (C
    Language English
    Publishing date 2017-07
    Publishing country United States
    Document type Journal Article
    ZDB-ID 219216-0
    ISSN 1556-4029 ; 0022-1198
    ISSN (online) 1556-4029
    ISSN 0022-1198
    DOI 10.1111/1556-4029.13313
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Local populations and inaccuracies: Determining the relevant mitochondrial haplotype distributions for North West European cats.

    Wesselink, Monique / Desmyter, Stijn / Kuiper, Irene

    Forensic science international. Genetics

    2017  Volume 30, Page(s) 71–80

    Abstract: Typing of different portions of the feline mitochondrial control region has illustrated pronounced differences in haplotype distributions between cats from the Netherlands and other parts of the world. To gain a better understanding of the haplotype ... ...

    Abstract Typing of different portions of the feline mitochondrial control region has illustrated pronounced differences in haplotype distributions between cats from the Netherlands and other parts of the world. To gain a better understanding of the haplotype distribution of North West Continental Europe, 605bp of mitochondrial DNA was typed from randomly selected cats from the Netherlands (N=146), Belgium (N=64) and South West Germany (N=128). The genetic differences between these randomly sampled European populations correlate to the geographical distances, with the Dutch and the South West German populations furthest apart and the Belgian population as an intermediate (Fst values 0.01-0.03). Comparison of North West European mainland distributions to published feline mitochondrial haplotype distributions illustrated moderate to large genetic differentiation (Fst values 0.01-0.32). In this comparison, the correlation between geographical and genetic distance was absent, leading to founder effects and human impact on cat population structure and dispersion being considered as important parameters. When an accurate estimation of feline haplotype distribution is required in forensics, care should be taken when deciding whether extrapolating the frequency data from a certain source to a larger area (country/continent) is justified or whether additional typing of local populations is necessary. This may differ from case to case as local frequencies can be relevant, but can also be deceitful. To improve the applicability of forensic feline mitochondrial DNA studies, documentation and publishing of sampling strategies is advised, as is the implementation of measures to help eliminate potentially erroneous haplotypes.
    MeSH term(s) Animals ; Cats/genetics ; DNA, Mitochondrial/genetics ; Europe ; Founder Effect ; Genetic Variation ; Haplotypes
    Chemical Substances DNA, Mitochondrial
    Language English
    Publishing date 2017-09
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2493339-9
    ISSN 1878-0326 ; 1872-4973
    ISSN (online) 1878-0326
    ISSN 1872-4973
    DOI 10.1016/j.fsigen.2017.05.011
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Octogenarian patients' sleep and delirium experiences in hospital and four years after aortic valve replacement: a qualitative interview study.

    Amofah, Hege Andersen / Broström, Anders / Instenes, Irene / Fridlund, Bengt / Haaverstad, Rune / Kuiper, Karel / Ranhoff, Anette Hylen / Norekvål, Tone M

    BMJ open

    2021  Volume 11, Issue 1, Page(s) e039959

    Abstract: Objectives: Sleep disturbances and delirium are frequently observed complications after surgical aortic valve replacement (SAVR) and transcutaneous aortic valve implantation (TAVI), especially in octogenarian patients. However, a knowledge gap exists on ...

    Abstract Objectives: Sleep disturbances and delirium are frequently observed complications after surgical aortic valve replacement (SAVR) and transcutaneous aortic valve implantation (TAVI), especially in octogenarian patients. However, a knowledge gap exists on patient experiences of sleep and delirium. In particular, patients' long-term sleep and delirium experiences are unknown. This article explores and describes how octogenarian patients suffering from delirium after aortic valve replacement experience their sleep and delirium situation.
    Design: An explorative and descriptive design with a longitudinal qualitative approach was applied. Qualitative content analysis following the recommended steps of Graneheim and Lundman was performed.
    Setting: Patients were included at a tertiary university hospital with 1400 beds. Delirium and insomnia screening was performed at baseline and five postoperative days after aortic valve treatment. For qualitative data, 10 patients were interviewed 6-12 months after treatment with focus on delirium. Five of these patients were reinterviewed 4 years after treatment, with focus on their sleep situation.
    Participants: Inclusion criteria; age 80+, treated with SAVR or TAVI and had experienced delirium after treatment.
    Results: For the initial interview, we included five men and five women, four following TAVI and six following SAVR, mean age 83. One overarching theme revealed from the content analyses;
    Conclusions: For octogenarian patients, sleep disturbances and delirium are long-term burdens and need a greater attention in order to improve patient care.
    MeSH term(s) Aged, 80 and over ; Aortic Valve/surgery ; Aortic Valve Stenosis/surgery ; Delirium/epidemiology ; Delirium/etiology ; Female ; Heart Valve Prosthesis Implantation/adverse effects ; Hospitals ; Humans ; Male ; Prospective Studies ; Risk Factors ; Sleep ; Treatment Outcome
    Language English
    Publishing date 2021-01-07
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2599832-8
    ISSN 2044-6055 ; 2044-6055
    ISSN (online) 2044-6055
    ISSN 2044-6055
    DOI 10.1136/bmjopen-2020-039959
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: A reply to: The transferability of diatoms to clothing and the methods appropriate for their collection and analysis in forensic geoscience, Forensic Sci. Int. 241 (2014) 127-137.

    Dragutinovic, Aleksandar / Uitdehaag, Stefan / Kuiper, Irene

    Forensic science international

    2015  Volume 247, Page(s) e25

    MeSH term(s) Clothing ; Diatoms ; Humans ; Specimen Handling/methods
    Language English
    Publishing date 2015-02
    Publishing country Ireland
    Document type Comment ; Letter
    ZDB-ID 424042-x
    ISSN 1872-6283 ; 0379-0738
    ISSN (online) 1872-6283
    ISSN 0379-0738
    DOI 10.1016/j.forsciint.2014.11.018
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Evidence for widespread alterations in cortical microstructure after 32 h of sleep deprivation.

    Voldsbekk, Irene / Bjørnerud, Atle / Groote, Inge / Zak, Nathalia / Roelfs, Daniel / Maximov, Ivan I / Geier, Oliver / Due-Tønnessen, Paulina / Bøen, Erlend / Kuiper, Yvonne S / Løkken, Lise-Linn / Strømstad, Marie / Blakstvedt, Taran Y / Bjorvatn, Bjørn / Malt, Ulrik F / Westlye, Lars T / Elvsåshagen, Torbjørn / Grydeland, Håkon

    Translational psychiatry

    2022  Volume 12, Issue 1, Page(s) 161

    Abstract: Cortical microstructure is influenced by circadian rhythm and sleep deprivation, yet the precise underpinnings of these effects remain unclear. The ratio between ... ...

    Abstract Cortical microstructure is influenced by circadian rhythm and sleep deprivation, yet the precise underpinnings of these effects remain unclear. The ratio between T
    MeSH term(s) Brain ; Female ; Humans ; Magnetic Resonance Imaging/methods ; Male ; Myelin Sheath/pathology ; Sleep Deprivation/diagnostic imaging ; Young Adult
    Language English
    Publishing date 2022-04-14
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2609311-X
    ISSN 2158-3188 ; 2158-3188
    ISSN (online) 2158-3188
    ISSN 2158-3188
    DOI 10.1038/s41398-022-01909-x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Octogenarian patients’ sleep and delirium experiences in hospital and four years after aortic valve replacement

    Bengt Fridlund / Rune Haaverstad / Anders Broström / Hege Andersen Amofah / Irene Instenes / Karel Kuiper / Anette Hylen Ranhoff / Tone M. Norekvål

    BMJ Open, Vol 11, Iss

    a qualitative interview study

    2021  Volume 1

    Abstract: Objectives Sleep disturbances and delirium are frequently observed complications after surgical aortic valve replacement (SAVR) and transcutaneous aortic valve implantation (TAVI), especially in octogenarian patients. However, a knowledge gap exists on ... ...

    Abstract Objectives Sleep disturbances and delirium are frequently observed complications after surgical aortic valve replacement (SAVR) and transcutaneous aortic valve implantation (TAVI), especially in octogenarian patients. However, a knowledge gap exists on patient experiences of sleep and delirium. In particular, patients’ long-term sleep and delirium experiences are unknown. This article explores and describes how octogenarian patients suffering from delirium after aortic valve replacement experience their sleep and delirium situation.Design An explorative and descriptive design with a longitudinal qualitative approach was applied. Qualitative content analysis following the recommended steps of Graneheim and Lundman was performed.Setting Patients were included at a tertiary university hospital with 1400 beds. Delirium and insomnia screening was performed at baseline and five postoperative days after aortic valve treatment. For qualitative data, 10 patients were interviewed 6–12 months after treatment with focus on delirium. Five of these patients were reinterviewed 4 years after treatment, with focus on their sleep situation.Participants Inclusion criteria; age 80+, treated with SAVR or TAVI and had experienced delirium after treatment.Results For the initial interview, we included five men and five women, four following TAVI and six following SAVR, mean age 83. One overarching theme revealed from the content analyses; Hours in bed represented emotional chaos. Whereas three subthemes described the patients’ experiences with sleep and delirium, a cascade of distressful experiences disturbing sleep, the struggle between sleep and activity and elements influencing sleep. Four years after the treatment, sleep disturbances persisted, and patients still remembered strongly the delirium incidences.Conclusions For octogenarian patients, sleep disturbances and delirium are long-term burdens and need a greater attention in order to improve patient care.
    Keywords Medicine ; R
    Subject code 610
    Language English
    Publishing date 2021-01-01T00:00:00Z
    Publisher BMJ Publishing Group
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article ; Online: DNA typing of birch: Development of a forensic STR system for Betula pendula and Betula pubescens.

    Wesselink, Monique / Dragutinović, Aleksandar / Noordhoek, Jeroen W / Bergwerff, Leonie / Kuiper, Irene

    Forensic science international. Genetics

    2018  Volume 35, Page(s) 70–81

    Abstract: Although botanical trace evidence is often encountered in case investigations, the utilization of such traces in forensic investigations is still limited. Development of a forensic STR system for the two species of Betula (birch) indigenous to and ... ...

    Abstract Although botanical trace evidence is often encountered in case investigations, the utilization of such traces in forensic investigations is still limited. Development of a forensic STR system for the two species of Betula (birch) indigenous to and abundant in North West Europe is a step in enhancing the applicability of traces from these species. We describe six microsatellite markers developed for birch species in detail, including repeat structure, and we propose a nomenclature for the encountered alleles. To assess the population characteristics, the genetic composition of wild, planted and intermediate populations of Betula pendula (a diploid species) and Betula pubescens (a tetraploid species) were investigated. The genetic differences between these two species were larger than the differences between populations of one species, even when both species co-occurred at one location. Therefore allele frequencies were estimated for both species separately. General, conservative random match probabilities were estimated for wild trees based on these allele frequencies (5∙10
    MeSH term(s) Betula/genetics ; DNA Fingerprinting ; Europe ; Forensic Genetics ; Gene Frequency ; Microsatellite Repeats ; Multiplex Polymerase Chain Reaction
    Language English
    Publishing date 2018-04-07
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2493339-9
    ISSN 1878-0326 ; 1872-4973
    ISSN (online) 1878-0326
    ISSN 1872-4973
    DOI 10.1016/j.fsigen.2018.04.001
    Database MEDical Literature Analysis and Retrieval System OnLINE

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