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  1. Article ; Online: Targeting notch signaling pathway in breast cancer stem cells through drug repurposing approach.

    Pathak, Yamini / Camps, Ihosvany / Mishra, Amaresh / Tripathi, Vishwas

    Molecular diversity

    2022  Volume 27, Issue 6, Page(s) 2431–2440

    Abstract: Breast cancer is recognized globally as one of the leading causes of malignant morbidity. It is a heterogeneous disease that accounts for 30 percent of all women diagnosed with cancer. To bring an anti-cancer drug from the bench to the bedside is an ... ...

    Abstract Breast cancer is recognized globally as one of the leading causes of malignant morbidity. It is a heterogeneous disease that accounts for 30 percent of all women diagnosed with cancer. To bring an anti-cancer drug from the bench to the bedside is an expensive and time-consuming process. The drug repurposing approach targets new enemies (new diseases) with old weapons (known drugs). The present study identified an FDA-approved drug targeting the γ-secretase complex involved in the Notch signaling pathway in breast cancer stem cells (BCSCs). A literature survey and in-silico study identified Venetoclax as a γ-secretase inhibitor (GSI) from 1615 FDA-approved drug compounds. In-silico docking potential of Venetoclax was better than the standard γ-secretase inhibitor RO4929097. Also, the molecular dynamics simulations of 200 ns confirmed the stability of the Venetoclax-γ-secretase complex. These findings suggest that the use of Venetoclax represents a potential γ-secretase inhibitor in breast cancer stem cells. Eventually, the in vitro and clinical evaluation will be needed to confirm the potential chemopreventive and treatment effects of Venetoclax against breast cancer and breast cancer stem cells. Venetoclax appeared as the most promising drug of the 1615 FDA-approved drugs. Our in-silico findings suggest that Venetoclax may act as a γ-secretase inhibitor against the Notch signaling pathway in breast cancer stem cells.
    MeSH term(s) Female ; Humans ; Breast Neoplasms/metabolism ; Receptors, Notch/metabolism ; Amyloid Precursor Protein Secretases ; Drug Repositioning ; Signal Transduction ; Neoplastic Stem Cells/metabolism ; Neoplastic Stem Cells/pathology
    Chemical Substances venetoclax (N54AIC43PW) ; Receptors, Notch ; Amyloid Precursor Protein Secretases (EC 3.4.-)
    Language English
    Publishing date 2022-11-14
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 1376507-3
    ISSN 1573-501X ; 1381-1991
    ISSN (online) 1573-501X
    ISSN 1381-1991
    DOI 10.1007/s11030-022-10561-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Dietary patterns of Indian school-aged children and associations with markers of chronic disease risk.

    Trilok-Kumar, Geeta / Malik, Anku / Gusain, Yamini / Millerot, Eve / Pathak, Renuka / Filteau, Suzanne

    Food science & nutrition

    2023  Volume 11, Issue 11, Page(s) 7070–7079

    Abstract: There is an increasing burden of noncommunicable diseases (NCDs) in India which may be related to changing dietary patterns. We aimed to assess dietary patterns in children since they have time to change unhealthy patterns before NCDs develop. ... ...

    Abstract There is an increasing burden of noncommunicable diseases (NCDs) in India which may be related to changing dietary patterns. We aimed to assess dietary patterns in children since they have time to change unhealthy patterns before NCDs develop. Participants were 665 children, 9-12 years old, born with low birth weight and 77 similarly aged normal birth weight controls. We collected data on sociodemography, anthropometry, body composition, and markers of risk for NCDs: grip strength, long jump, hemoglobin A1c (HbA1c). A food frequency questionnaire was used to collect dietary data from which dietary patterns were derived using principal component analysis (PCA). Fourteen food groups were included in the PCA analysis, resulting in three components: 'fruits and vegetables', 'protein', and 'sugar and fat'. Higher socioeconomic status and maternal education were associated with lower adherence to the fruit and vegetable pattern and higher adherence to the protein and sugar and fat patterns. Adherence to the fruits and vegetables pattern was associated with lower height-for-age, whereas the fat and sugar pattern was associated with higher indicators of body fat. In linear regression analyses adjusted for age, sex, religion, socioeconomic status, maternal education, and season of data collection, adherence to the 'fruits and vegetables' pattern was associated with lower grip strength, shorter long jump, and lower HbA1c. Adherence to the other patterns was not associated with NCD risk factors. Higher consumption of fruits and vegetables, achievable even by poorer families in the cohort, may lower HbA1c, a risk factor for diabetes.
    Language English
    Publishing date 2023-08-16
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2703010-6
    ISSN 2048-7177
    ISSN 2048-7177
    DOI 10.1002/fsn3.3631
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Natural compounds as a potential modifier of stem cells renewal: Comparative analysis.

    Mishra, Amaresh / Pathak, Yamini / Mishra, Surabhi Kirti / Prakash, Hridayesh / Tripathi, Vishwas

    European journal of pharmacology

    2022  Volume 938, Page(s) 175412

    Abstract: Cancer stem cells (CSCs) are indispensable for development, progression, drug resistance, and tumor metastasis. Current cancer-directed interventions target targeting rapidly dividing cancer cells and slow dividing CSCs, which are the root cause of ... ...

    Abstract Cancer stem cells (CSCs) are indispensable for development, progression, drug resistance, and tumor metastasis. Current cancer-directed interventions target targeting rapidly dividing cancer cells and slow dividing CSCs, which are the root cause of cancer origin and recurrence. The most promising targets include several self-renewal pathways involved in the maintenance and renewal of CSCs, such as the Wnt/β-Catenin, Sonic Hedgehog, Notch, Hippo, Autophagy, and Ferroptosis. In view of safety, natural compounds are coming to the front line of treatment modalities for modifying various signaling pathways simultaneously involved in maintaining CSCs. Therefore, targeting CSCs with natural compounds is a promising approach to treating various types of cancers. In view of this, here we provide a comprehensive update on the current status of natural compounds that effectively tune key self-renewal pathways of CSCs. In addition, we highlighted surface expression markers in several types of cancer. We also emphasize how natural compounds target these self-renewal pathways to reduce therapy resistance and cancer recurrence properties of CSCs, hence providing valuable cancer therapeutic strategies. The inclusion of nutraceuticals is believed to enhance the therapeutic efficacy of current cancer-directed interventions significantly.
    Language English
    Publishing date 2022-11-24
    Publishing country Netherlands
    Document type Journal Article ; Review
    ZDB-ID 80121-5
    ISSN 1879-0712 ; 0014-2999
    ISSN (online) 1879-0712
    ISSN 0014-2999
    DOI 10.1016/j.ejphar.2022.175412
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Rifampicin and Letermovir as potential repurposed drug candidate for COVID-19 treatment: insights from an in-silico study.

    Pathak, Yamini / Mishra, Amaresh / Choudhir, Gourav / Kumar, Anuj / Tripathi, Vishwas

    Pharmacological reports : PR

    2021  Volume 73, Issue 3, Page(s) 926–938

    Abstract: Introduction: Drug repurposing is the need of the hour considering the medical emergency caused by the COVID-19 pandemic. Recently, cytokine storm by the host immune system has been linked with high viral load, loss of lung function, acute respiratory ... ...

    Abstract Introduction: Drug repurposing is the need of the hour considering the medical emergency caused by the COVID-19 pandemic. Recently, cytokine storm by the host immune system has been linked with high viral load, loss of lung function, acute respiratory distress syndrome (ARDS), multiple organ failure, and subsequent fatal outcome.
    Objective: This study aimed to identify potential FDA approved drugs that can be repurposed for COVID-19 treatment using an in-silico analysis.
    Methods: In this study, virtual screening of selected FDA approved drugs was performed by targeting the main protease (M
    Results: Based on the findings, Rifampicin and Letermovir appeared as the most promising drug showing a very good binding affinity with the main protease of SARS-CoV-2 and TNF-α, IL-6, and IL-1β. However, it is pertinent to mention here that our findings need further validation by in vitro analysis and clinical trials.
    Conclusion: This study provides an insight into the drug repurposing approach in which several FDA approved drugs were examined to inhibit COVID-19 infection by targeting the main protease of SARS-COV-2 and the cytokine storm.
    MeSH term(s) Acetates/therapeutic use ; Antiviral Agents/therapeutic use ; COVID-19/drug therapy ; COVID-19/metabolism ; Cytokine Release Syndrome/drug therapy ; Cytokines/metabolism ; Drug Repositioning/methods ; Humans ; Molecular Docking Simulation ; Quinazolines/therapeutic use ; Rifampin/therapeutic use ; SARS-CoV-2/drug effects ; Viral Proteases/metabolism
    Chemical Substances Acetates ; Antiviral Agents ; Cytokines ; Quinazolines ; letermovir (1H09Y5WO1F) ; Viral Proteases (EC 3.4.-) ; Rifampin (VJT6J7R4TR)
    Language English
    Publishing date 2021-05-10
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2186248-5
    ISSN 1734-1140
    ISSN 1734-1140
    DOI 10.1007/s43440-021-00228-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Food Consumption Pattern of Adolescents in Delhi-NCR Born Full Term with Low Birth Weight with Reference to the New Estimated Average Requirement

    Anku Malik / Yamini Gusain / Renuka Pathak / Geeta Trilok Kumar

    Journal of Clinical and Diagnostic Research, Vol 15, Iss 6, Pp OC23-OC

    2021  Volume 28

    Abstract: Introduction: Nutrition and lifestyle transition in India have attributed to the burden of malnutrition in early life. Evidence suggests that children born Low Birth Weight (LBW) are at increased risk of later life diseases. Aim: The study aims to ... ...

    Abstract Introduction: Nutrition and lifestyle transition in India have attributed to the burden of malnutrition in early life. Evidence suggests that children born Low Birth Weight (LBW) are at increased risk of later life diseases. Aim: The study aims to describe the nutrient intake of term LBW children with reference to the new estimated average requirement. Materials and Methods: This questionnaire based crosssectional study was conducted in the premises of Institute of Home Economics, Delhi. Dietary intake data for 139 term LBW children (9-12 years) was collected using 24-hour recall. Nutrient and food group intake was analysed using Diet Cal (version 10). Gender differences in dietary intake were assessed using Mann-Whitney U test. Proportion of children with micronutrient intake below Estimated Average Requirement (EAR) was also estimated. Data was analysed using Mann-Whitney U test and Chi-square test. Results: The protein intake of more than 50% children provided 10-15% of energy. Carbohydrate contributed to less than 55% of day’s energy while energy from fat was more than 30% for majority of children. Percentage of children with inadequate micronutrient intake ranged from 44.6% for Vitamin C to 100% for Vitamin B12 and Vitamin D. A high proportion of children had low consumption of green leafy vegetables, nuts, oilseeds, and fleshy foods. The intake of milk and milk products were significantly higher in boys as compared to girls (p=0.02). Conclusion: There is a transition from carbohydrate dense foods to high fat processed foods that are inadequate in micronutrients. Findings highlight the need for an intensive public health approach to improve the diet quality of the Indian population.
    Keywords childhood ; dietary ; macronutrients ; micronutrients ; national capital region ; Medicine ; R
    Subject code 360
    Language English
    Publishing date 2021-06-01T00:00:00Z
    Publisher JCDR Research and Publications Private Limited
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: Natural compounds as potential inhibitors of SARS-CoV-2 main protease

    Amaresh Mishra / Yamini Pathak / Anuj Kumar / Surabhi Kirti Mishra / Vishwas Tripathi

    Asian Pacific Journal of Tropical Biomedicine, Vol 11, Iss 4, Pp 155-

    An in-silico study

    2021  Volume 163

    Abstract: Objective: To explore natural compounds as potential inhibitors against main protease (Mpro) of SARS-CoV-2. Methods: In the current study, systematic molecular docking analysis was conducted using AutoDock 4.2 to determine the binding affinities and ... ...

    Abstract Objective: To explore natural compounds as potential inhibitors against main protease (Mpro) of SARS-CoV-2. Methods: In the current study, systematic molecular docking analysis was conducted using AutoDock 4.2 to determine the binding affinities and interactions between natural compounds and Mpro. Selected natural compounds were further validated using a combination of molecular dynamic (MD) simulations and molecular mechanic Poisson-Boltzmann surface area (MM/PBSA) free energy calculations. Results: Out of twenty natural compounds, four natural metabolites namely, amentoflavone, guggulsterone, puerarin, and piperine were found to have strong interaction with Mpro of SARS-CoV-2 based on docking analysis. During MD simulations, all four natural compounds bound to Mpro at 50 ns and MM/G/P/BSA free energy calculations showed that all four shortlisted ligands had stable and favorable energies with strong binding to Mpro protein. Conclusions: Guggulsterone is a potential inhibitor of COVID- 19 main protease Mpro. Further in vitro and pre-clinical studies are needed.
    Keywords sars-cov-2 ; covid-19 ; amentoflavone ; guggulsterone ; puerarin ; piperine ; Arctic medicine. Tropical medicine ; RC955-962 ; Biology (General) ; QH301-705.5
    Language English
    Publishing date 2021-01-01T00:00:00Z
    Publisher Wolters Kluwer Medknow Publications
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article ; Online: The association of ABO blood group with the asymptomatic COVID-19 cases in India

    Singh, Prajjval Pratap / Srivastava, Abhishek K / Upadhyay, Sudhir K / Singh, Ashish / Gupta, Pranav / Maurya, Sanjeev / Upadhyay, Shashank / Pandey, Rudra K / Shrivastava, Anshika / Dev, Priya / Singh, Vanya / Mishra, Rahul / Shukla, Manoj K / Chaubey, Govind / Kumar, Pradeep / Rai, Vandana / Tripathy, Yamini B / Pathak, Abhishek / Mishra, Vijaya N /
    Basu Mallick, Chandana / Shrivastava, Panjak / Chaubey, Gyaneshwer

    medRxiv

    Abstract: The COVID-19 pandemic has resulted several waves of infection in many countries worldwide. The large variations in case fatality ratio among different geographical regions suggests that the human susceptibility against this virus varies substantially. ... ...

    Abstract The COVID-19 pandemic has resulted several waves of infection in many countries worldwide. The large variations in case fatality ratio among different geographical regions suggests that the human susceptibility against this virus varies substantially. Several studies from different parts of the world showed a significant association of ABO blood group and COVID-19 susceptibility. It was shown that individuals with blood group O are at the lower risk of coronavirus infection. To establish the association of ABO blood group in SARS-CoV-2 susceptibility, we for the first time analysed SARS-CoV-2 neutralising antibodies as well as blood groups among 509 random individuals from three major districts of Eastern Uttar Pradesh region of India. . Interestingly, we found neutralising antibodies in significantly higher percentage of people with blood group AB (0.36) followed by B (0.31), A (0.22) and lowest in people with blood group O (0.11). This indicates that people with blood group AB are at comparatively higher risk of infection than other blood groups. Further, in line to previous reports we too observed that people with blood group O have significantly decreased risk of SARS-CoV-2 infection. Thus, among the asymptomatic SARS-CoV-2 infected individuals with blood group AB has highest, whilst blood group O has lowest risk of infection.
    Keywords covid19
    Language English
    Publishing date 2021-04-06
    Publisher Cold Spring Harbor Laboratory Press
    Document type Article ; Online
    DOI 10.1101/2021.04.01.21254681
    Database COVID19

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  8. Article ; Online: Estimation of real-infection and immunity against SARS-CoV-2 in Indian populations

    Singh, Prajjval Pratap / Tamang, Rakesh / Shukla, Manoj / Pathak, Abhishek / Srivastava, Anshika / Gupta, Pranav / Bhatt, Alay / Shrivastava, Abhishek K. / Upadhyay, Sudhir K. / Singh, Ashish / Maurya, Sanjeev / Saxena, Purnendu / Singh, Vanya / Chaubey, Akhilesh Kumar / Mishra, Dinesh Kumar / Patel, Yashvant / Pandey, Rudra Kumar / Srivastava, Ankit / Khanam, Nargis /
    Das, Debashruti / Bandopadhyay, Audditiya / Chorol, Urgyan / Pasupuleti, Nagarjuna / Kumar, Sachin / Prakash, Satya / Mishra, Astha / Dubey, Pavan Kumar / Parihar, Ajit / Basu, Priyoneel / Sequeira, Jaison J / KC, Lavanya / Vijayalaxmi, Vijayalaxmi / Bhat.K, Vishnu Shreekara / Ijinu, Thadiyan Parambil / Aggarwal, Dau Dayal / Prakash, Anand / Yadav, Kiran / Yadav, Anupam / Upadhyay, Vandana / Mukim, Gunjan / Bhandari, Ankan / Ghosh, Ankita / Kumar, Akash / Yadav, Vijay Kumar / Nigam, Kriti / Harshey, Abhimanyu / Das, Tanurup / Devadas, Deepa / Mishra, Surendra Pratap / Kumar, Ashish / Yadav, Abhay Kumar / Singh, Nitish Kumar / Kaur, Manpreet / Kumar, Sanjay / Srivastava, Nikhil / Sharma, Charu / Chowdhury, Ritabrata / Jain, Dharmendra / Kumar, Abhai / Shukla, Ritesh / Mishra, Raghav Kumar / Singh, Royana / Tripathi, Yamini B / Mishra, Vijay Nath / Mustak, Mohammed S. / Rai, Niraj / Rawat, Sumit Kumar / Survajhala, Prashant / singh, Keshav K / Mallick, Chandana Basu / Shrivastava, Pankaj / Chaubey, Gyaneshwer

    medRxiv

    Abstract: Infection born by Coronavirus SARS-CoV-2 has swept the world within a time of a few months. It has created a devastating effect on humanity with social and economic depressions. Europe and America were the hardest hit continents. India has also lost ... ...

    Abstract Infection born by Coronavirus SARS-CoV-2 has swept the world within a time of a few months. It has created a devastating effect on humanity with social and economic depressions. Europe and America were the hardest hit continents. India has also lost several lives, making the country fourth most deadly worldwide. However, the infection and death rate per million and the case fatality ratio in India were substantially lower than many of the developed nations. Several factors have been proposed including the genetics. One of the important facts is that a large chunk of Indian population is asymptomatic to the SARS-CoV-2 infection. Thus, the real infection in India is much higher than the reported number of cases. Therefore, the majority of people are already immune in the country. To understand the dynamics of real infection as well as level of immunity against SARS-CoV-2, we have performed antibody testing (serosurveillance) in the urban region of fourteen Indian districts encompassing six states. In our survey, the seroprevalence frequency varied between 0.01-0.48, suggesting high variability of viral transmission among states. We also found out that the cases reported by the Government were several fold lower than the real infection. This discrepancy is majorly driven by a higher number of asymptomatic cases. Overall, we suggest that with the high level of immunity developed against SARS-CoV-2 in the majority of the districts, it is less likely to have a second wave in India.
    Keywords covid19
    Language English
    Publishing date 2021-02-08
    Publisher Cold Spring Harbor Laboratory Press
    Document type Article ; Online
    DOI 10.1101/2021.02.05.21251118
    Database COVID19

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