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  1. Article ; Online: Illumina and PacBio DNA sequencing data,

    Morabito, Christian / Aiese Cigliano, Riccardo / Maréchal, Eric / Rébeillé, Fabrice / Amato, Alberto

    Data in brief

    2020  Volume 31, Page(s) 105729

    Abstract: The complete genome of the ... ...

    Abstract The complete genome of the thraustochytrid
    Language English
    Publishing date 2020-05-21
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2786545-9
    ISSN 2352-3409 ; 2352-3409
    ISSN (online) 2352-3409
    ISSN 2352-3409
    DOI 10.1016/j.dib.2020.105729
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Book: Biosynthesis of vitamins in plants

    Rébeillé, Fabrice

    Vitamins A, B1, B2, B3, B5

    (Advances in botanical research)

    2011  

    Author's details ed. Fabrice Rébeillé
    Series title Advances in botanical research
    Language English
    Publisher Academic Press
    Publishing place Amsterdam ;Boston ;Heidelberg u.a.
    Document type Book
    Database Leibniz Institute of Plant Genetics and Crop Plant Research

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  3. Book: Biosynthesis of vitamins in plants

    Rébeillé, Fabrice

    : Vitamins A, B1, B2, B3, B5

    (Advances in botanical research ; 58)

    2011  

    Author's details ed. Fabrice Rébeillé
    Series title Advances in botanical research ; 58
    Language English
    Size XXXII, 287 S., Ill., graph. Darst.
    Edition 1. Aufl.
    Publisher Academic Press
    Publishing place Amsterdam ; Boston ; Heidelberg u.a.
    Document type Book
    Note Literaturangaben
    ISBN 9780123864796 ; 0123864798
    Database Leibniz Institute of Plant Genetics and Crop Plant Research

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    Inter-library loan at ZB MED

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  4. Book: Biosynthesis of vitamins in plants

    Rébeillé, Fabrice

    : Vitamins A, B1, B2, B3, B5

    (Advances in botanical research ; 59)

    2011  

    Abstract: ... ...

    Author's details ed. Fabrice Rébeillé
    Series title Advances in botanical research ; 59
    Abstract Literaturangaben
    Language English
    Size XXXIV, 292 S., [6 Bl.], Ill., graph. Darst.
    Edition 1. Aufl.
    Publisher Academic Press
    Publishing place Amsterdam ; Boston ; Heidelberg u.a.
    Document type Book
    ISBN 9780123858535 ; 0123858534
    Database Leibniz Institute of Plant Genetics and Crop Plant Research

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  5. Article ; Online: Illumina and PacBio DNA sequencing data, de novo assembly and annotation of the genome of Aurantiochytrium limacinum strain CCAP_4062/1

    Christian Morabito / Riccardo Aiese Cigliano / Eric Maréchal / Fabrice Rébeillé / Alberto Amato

    Data in Brief, Vol 31, Iss , Pp 105729- (2020)

    2020  

    Abstract: The complete genome of the thraustochytrid Aurantiochytrium limacinum strain CCAP_4062/1 was sequenced using both Illumina Novaseq 6000 and third generation sequencing technology PacBio RSII in order to obtain trustworthy assembly and annotation. The ... ...

    Abstract The complete genome of the thraustochytrid Aurantiochytrium limacinum strain CCAP_4062/1 was sequenced using both Illumina Novaseq 6000 and third generation sequencing technology PacBio RSII in order to obtain trustworthy assembly and annotation. The reads from both platforms were combined at multiple levels in order to obtain a reliable assembly, then compared to the A. limacinum ATCCⓇ MYA1381™ reference genome. The final assembly was annotated with the help of strain CCAP_4062/1 RNAseq data. A. limacinum strain CCAP_4062/1 is an industrial strain used for the production of very long chain polyunsaturated fatty acids, like the docosahexaenoic acid that is an essential fatty acid synthesised only at very low pace in humans and vertebrates . Thraustochytrids in general and Aurantiochytrium more specifically, are used for carotenoid and squalene production as well. Beside their biotechnological interest, thraustochytrids play a crucial role in both inshore and oceanic basins ecosystems. Genome sequences will foster biotechnological as well as ecological studies.
    Keywords Genome ; Third generation sequencing ; Next generation sequencing ; Structural annotation ; Biotechnology ; Thraustochytrid ; Computer applications to medicine. Medical informatics ; R858-859.7 ; Science (General) ; Q1-390
    Subject code 572
    Language English
    Publishing date 2020-08-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

    Full text online

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  6. Article ; Online: The zoospores of the thraustochytrid Aurantiochytrium limacinum: Transcriptional reprogramming and lipid metabolism associated to their specific functions.

    Dellero, Younès / Maës, Cécile / Morabito, Christian / Schuler, Martin / Bournaud, Caroline / Aiese Cigliano, Riccardo / Maréchal, Eric / Amato, Alberto / Rébeillé, Fabrice

    Environmental microbiology

    2020  Volume 22, Issue 5, Page(s) 1901–1916

    Abstract: Aurantiochytrium limacinum (Thraustochytriaceae, class Labyrinthulomycetes) is a marine Stramenopile and a pioneering mangrove decomposer. Its life cycle involves a non-motile stage and zoospore production. We observed that the composition of the medium, ...

    Abstract Aurantiochytrium limacinum (Thraustochytriaceae, class Labyrinthulomycetes) is a marine Stramenopile and a pioneering mangrove decomposer. Its life cycle involves a non-motile stage and zoospore production. We observed that the composition of the medium, the presence of amino acids in particular, affects the release of zoospores. Two opposite conditions were defined, one with a cell population mainly composed of zoospores and another one with almost only non-motile cells. In silico allelic frequency analysis and flow cytometry suggest that zoospores and non-motile cells share the same ploidy level and are diploid. Through an RNA-seq approach, the transcriptional reprogramming accompanying the formation of zoospores was investigated, with a particular focus on their lipid metabolism. Based on a differential expression analysis, zoospores are characterized by high motility, very active signal transduction, an arrest of the cell division, a low amino acid metabolism and low glycolysis. Focusing on lipid metabolism, genes involved in lipase activities and peroxisomal β-oxidation are upregulated. qRT-PCR of selected lipid genes and lipid analyses during the life span of zoospores confirmed these observations. These results highlight the importance of the lipid dynamics in zoospores and show the metabolic processes required to use these energy-dense molecules as fuel for zoospore survival during their quest of new territories.
    MeSH term(s) Amino Acids/metabolism ; Animals ; Cell Division/genetics ; Computer Simulation ; Culture Media/metabolism ; Diploidy ; Glycolysis/genetics ; Life Cycle Stages ; Lipid Metabolism/genetics ; Lipid Metabolism/physiology ; Lipids/analysis ; Signal Transduction/genetics ; Spores/growth & development ; Stramenopiles/genetics ; Stramenopiles/metabolism ; Transcription, Genetic/genetics
    Chemical Substances Amino Acids ; Culture Media ; Lipids
    Language English
    Publishing date 2020-03-16
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2020213-1
    ISSN 1462-2920 ; 1462-2912
    ISSN (online) 1462-2920
    ISSN 1462-2912
    DOI 10.1111/1462-2920.14978
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Illumina and PacBio DNA sequencing data, de novo assembly and annotation of the genome of Aurantiochytrium limacinum strain CCAP_4062/1

    Morabito, Christian / Aiese Cigliano, Riccardo / Maréchal, Eric / Rébeillé, Fabrice / Amato, Alberto

    Data in Brief. 2020 Aug., v. 31

    2020  

    Abstract: The complete genome of the thraustochytrid Aurantiochytrium limacinum strain CCAP_4062/1 was sequenced using both Illumina Novaseq 6000 and third generation sequencing technology PacBio RSII in order to obtain trustworthy assembly and annotation. The ... ...

    Abstract The complete genome of the thraustochytrid Aurantiochytrium limacinum strain CCAP_4062/1 was sequenced using both Illumina Novaseq 6000 and third generation sequencing technology PacBio RSII in order to obtain trustworthy assembly and annotation. The reads from both platforms were combined at multiple levels in order to obtain a reliable assembly, then compared to the A. limacinum ATCCⓇ MYA1381™ reference genome. The final assembly was annotated with the help of strain CCAP_4062/1 RNAseq data. A. limacinum strain CCAP_4062/1 is an industrial strain used for the production of very long chain polyunsaturated fatty acids, like the docosahexaenoic acid that is an essential fatty acid synthesised only at very low pace in humans and vertebrates . Thraustochytrids in general and Aurantiochytrium more specifically, are used for carotenoid and squalene production as well. Beside their biotechnological interest, thraustochytrids play a crucial role in both inshore and oceanic basins ecosystems. Genome sequences will foster biotechnological as well as ecological studies.
    Keywords DNA ; carotenoids ; docosahexaenoic acid ; essential fatty acids ; genome ; squalene
    Language English
    Dates of publication 2020-08
    Publishing place Elsevier Inc.
    Document type Article
    ZDB-ID 2786545-9
    ISSN 2352-3409
    ISSN 2352-3409
    DOI 10.1016/j.dib.2020.105729
    Database NAL-Catalogue (AGRICOLA)

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  8. Book ; Online: Biosynthesis of vitamins in plants

    Douce, Roland / Rébeillé, Fabrice

    Part A ; Vitamins A, B1, B2, B3, B5

    (Advances in botanical research ; v. 58)

    2011  

    Abstract: Advances in Botanical Research publishes in-depth and up-to-date reviews on a wide range of topics in plant sciences. The series features a wide range of reviews by recognized experts on all aspects of plant genetics, biochemistry, cell biology, ... ...

    Author's details volume editors Fabrice Rébeillé and Roland Douce
    Series title Advances in botanical research ; v. 58
    Abstract Advances in Botanical Research publishes in-depth and up-to-date reviews on a wide range of topics in plant sciences. The series features a wide range of reviews by recognized experts on all aspects of plant genetics, biochemistry, cell biology, molecular biology, physiology and ecology. This thematic volume features reviews on cutting-edge topics on BIOSYNTHESIS OF VITAMINS IN PLANTS. Covers cutting-edge topics on BIOSYNTHESIS OF VITAMINS IN PLANTS Each chapter covers biological functions and requirements, distribution, Biosynthesis and location of the pathway, regulation, turnover and catabolism, Main differences with other autotrophic organisms, and engineering the pathway for nutritional enhancement
    Keywords Plant biotechnology ; Plant vitamins ; Technik / Wissen # Biologie
    Language English
    Size Online-Ressource (1 online resource (xxxii, 287, [2] p. of plates)), col. ill
    Edition 1st ed
    Publisher Academic Press
    Publishing place Boston
    Document type Book ; Online
    Note Includes bibliographical references and indexes
    ISBN 0123864798 ; 0123864801 ; 9780123864796 ; 9780123864802
    Database Former special subject collection: coastal and deep sea fishing

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  9. Book ; Online: Biosynthesis of vitamins in plants

    Douce, Roland / Rébeillé, Fabrice

    Part B: Vitamins B6, B8, B9, C, E, K

    (Advances in botanical research ; v. 59)

    2011  

    Abstract: Edited by Jean-Claude Kader and Michel Delseny and supported by an international Editorial Board, Advances in Botanical Research publishes in-depth and up-to-date reviews on a wide range of topics in plant sciences. The series features a wide range of ... ...

    Institution ebrary, Inc
    Author's details volume editors, Fabrice Rébeillé and Roland Douce
    Series title Advances in botanical research ; v. 59
    Abstract Edited by Jean-Claude Kader and Michel Delseny and supported by an international Editorial Board, Advances in Botanical Research publishes in-depth and up-to-date reviews on a wide range of topics in plant sciences. The series features a wide range of reviews by recognized experts on all aspects of plant genetics, biochemistry, cell biology, molecular biology, physiology and ecology. This eclectic volume features reviews on cutting-edge topics of interest to postgraduates and researchers alike.Publishes in-depth and up-to-date reviews on a wide range of topics in plant sciences. The
    Keywords Plants/Analysis ; Vitamins ; Technik / Wissen # Biologie
    Language English
    Size Online-Ressource (xxxiv, 292 p., [11] p. of plates), ill. (some col.)
    Edition 1st ed
    Publisher Academic Press, an imprint of Elsevier
    Publishing place London
    Document type Book ; Online
    Note Includes bibliographical references and indexes
    ISBN 9780123858535 ; 9781283275972 ; 0123858534 ; 128327597X
    Database Former special subject collection: coastal and deep sea fishing

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  10. Article ; Online: An Oil Hyper-Accumulator Mutant Highlights Peroxisomal ATP Import as a Regulatory Step for Fatty Acid Metabolism in

    Deragon, Etienne / Schuler, Martin / Aiese Cigliano, Riccardo / Dellero, Younès / Si Larbi, Gregory / Falconet, Denis / Jouhet, Juliette / Maréchal, Eric / Michaud, Morgane / Amato, Alberto / Rébeillé, Fabrice

    Cells

    2021  Volume 10, Issue 10

    Abstract: Thraustochytrids are marine protists that naturally accumulate triacylglycerol with long chains of polyunsaturated fatty acids, such as ω3-docosahexaenoic acid (DHA). They represent a sustainable response to the increasing demand for these "essential" ... ...

    Abstract Thraustochytrids are marine protists that naturally accumulate triacylglycerol with long chains of polyunsaturated fatty acids, such as ω3-docosahexaenoic acid (DHA). They represent a sustainable response to the increasing demand for these "essential" fatty acids (FAs). Following an attempt to transform a strain of
    MeSH term(s) Adenosine Triphosphate/metabolism ; Biological Transport ; Fatty Acids/metabolism ; Gene Expression Profiling ; Genome ; Models, Biological ; Mutation/genetics ; Oils/metabolism ; Peroxisomes/metabolism ; Phylogeny ; Stramenopiles/genetics ; Stramenopiles/growth & development ; Stramenopiles/metabolism ; Stramenopiles/ultrastructure ; Transcriptome/genetics
    Chemical Substances Fatty Acids ; Oils ; Adenosine Triphosphate (8L70Q75FXE)
    Language English
    Publishing date 2021-10-06
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2661518-6
    ISSN 2073-4409 ; 2073-4409
    ISSN (online) 2073-4409
    ISSN 2073-4409
    DOI 10.3390/cells10102680
    Database MEDical Literature Analysis and Retrieval System OnLINE

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