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Book ; Online: Selected Papers from IEEE ICASI 2019

Chang, Shoou-Jinn / Chang, Shoou-Jinn / Young, Sheng-Joue / Prior, Stephen D. / Ji, Liang-Wen

2020

Keywords	History of engineering & technology ; HVAC energy conservation ; optimal control ; genetic algorithm ; FCU group control ; central pattern generator ; Theo Jansen Linkage ; non-collocated actuators ; fast Fourier transform ; FFT ; kernel ; MIMO ; OFDM ; multistandard ; electrical resistivity tomography ; boundary effect ; 3D effect ; error compensation ; free-form surface ; on-machine measurement ; mirror compensation method ; stereo matching ; cost aggregation ; image filtering ; binocular stereo vision ; deep learning for network security ; long short-term memory ; malicious traffic classification ; assembly design ; usability and operation complexity ; fuzzy theory ; product design ; layout strategy ; design method ; n/a
Size	1 electronic resource (160 pages)
Publisher	MDPI - Multidisciplinary Digital Publishing Institute
Publishing place	Basel, Switzerland
Document type	Book ; Online
Note	English ; Open Access
HBZ-ID	HT021043918
ISBN	9783039289301 ; 3039289306
Database	ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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Article ; Online: Development of Fluorescence-Tagged SARS-CoV-2 Virus-like Particles by a Tri-Cistronic Vector Expression System for Investigating the Cellular Entry of SARS-CoV-2.

Chang, Young-Sheng / Chu, Li-Wei / Chen, Zan-Yu / Wu, Joh-Sin / Su, Wen-Chi / Yang, Chia-Jui / Ping, Yueh-Hsin / Lin, Cheng-Wen

Viruses

2022 Volume 14, Issue 12

Abstract: Severe acute respiratory syndrome-related coronavirus-2 (SARS-CoV-2) has caused the pandemic that began late December 2019. The co-expression of SARS-CoV-2 structural proteins in cells could assemble into several types of virus-like particles (VLPs) ... ...

Abstract	Severe acute respiratory syndrome-related coronavirus-2 (SARS-CoV-2) has caused the pandemic that began late December 2019. The co-expression of SARS-CoV-2 structural proteins in cells could assemble into several types of virus-like particles (VLPs) without a viral RNA genome. VLPs containing S proteins with the structural and functional properties of authentic virions are safe materials to exploit for virus-cell entry and vaccine development. In this study, to generate SARS-CoV-2 VLPs (SCoV2-SEM VLPs) composed of three structural proteins including spike (S), envelop (E) protein and membrane (M) protein, a tri-cistronic vector expression system was established in a cell line co-expressing SARS-CoV-2 S, E and M proteins. The SCoV2-SEM VLPs were harvested from the cultured medium, and three structure proteins were confirmed by Western blot assay. A negative-stain TEM assay demonstrated the size of the SCoV2-SEM VLPs with a diameter of about 90 nm. To further characterize the infectious properties of SCoV2-SEM VLPs, the VLPs (atto647N-SCoV2-SEM VLPs) were fluorescence-labeled by conjugation with atto-647N and visualized under confocal microscopy at a single-particle resolution. The results of the infection assay revealed that atto647N-SCoV2-SEM VLPs attached to the surface of the HEK293T cells at the pre-binding phase in a ACE2-dependent manner. At the post-infection phase, atto647N-SCoV2-SEM VLPs either fused with the cellular membrane or internalized into the cytoplasm with mCherry-rab5-positive early endosomes. Moreover, fusion with the cellular membrane and the internalization with early endosomes could be inhibited by the treatment of camostat (a pharmacological inhibitor of TMPRSS2) and chlorpromazine (an endocytosis inhibitor), respectively. These results elucidated that SCoV2-SEM VLPs behave similarly to the authentic live SARS-CoV-2 virus, suggesting that the development of SCoV2-SEM VLPs provide a realistic and safe experimental model for studying the infectious mechanism of SARS-CoV-2.
MeSH term(s)	Humans ; COVID-19/prevention & control ; Endocytosis ; Fluorescence ; HEK293 Cells ; SARS-CoV-2/genetics ; SARS-CoV-2/metabolism ; Spike Glycoprotein, Coronavirus/genetics ; Spike Glycoprotein, Coronavirus/metabolism ; Virus Internalization ; Genetic Vectors
Chemical Substances	Spike Glycoprotein, Coronavirus ; spike protein, SARS-CoV-2
Language	English
Publishing date	2022-12-19
Publishing country	Switzerland
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2516098-9
ISSN	1999-4915 ; 1999-4915
ISSN (online)	1999-4915
ISSN	1999-4915
DOI	10.3390/v14122825
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: SARS Unique Domain (SUD) of Severe Acute Respiratory Syndrome Coronavirus Induces NLRP3 Inflammasome-Dependent CXCL10-Mediated Pulmonary Inflammation

Young-Sheng Chang / Bo-Han Ko / Jyh-Cherng Ju / Hsin-Hou Chang / Su-Hua Huang / Cheng-Wen Lin

International Journal of Molecular Sciences, Vol 21, Iss 3179, p

2020 Volume 3179

Abstract: Severe acute respiratory syndrome–associated coronavirus (SARS-CoV) initiates the cytokine/chemokine storm-mediated lung injury. The SARS-CoV unique domain (SUD) with three macrodomains (N, M, and C), showing the G-quadruplex binding activity, was ... ...

Abstract	Severe acute respiratory syndrome–associated coronavirus (SARS-CoV) initiates the cytokine/chemokine storm-mediated lung injury. The SARS-CoV unique domain (SUD) with three macrodomains (N, M, and C), showing the G-quadruplex binding activity, was examined the possible role in SARS pathogenesis in this study. The chemokine profile analysis indicated that SARS-CoV SUD significantly up-regulated the expression of CXCL10, CCL5 and interleukin (IL)-1β in human lung epithelial cells and in the lung tissues of the mice intratracheally instilled with the recombinant plasmids. Among the SUD subdomains, SUD-MC substantially activated AP-1-mediated CXCL10 expression in vitro. In the wild type mice, SARS-CoV SUD-MC triggered the pulmonary infiltration of macrophages and monocytes, inducing CXCL10-mediated inflammatory responses and severe diffuse alveolar damage symptoms. Moreover, SUD-MC actuated NOD-, LRR- and pyrin domain-containing protein 3 (NLRP3) inflammasome-dependent pulmonary inflammation, as confirmed by the NLRP3 inflammasome inhibitor and the NLRP3 −/− mouse model. This study demonstrated that SARS-CoV SUD modulated NLRP3 inflammasome-dependent CXCL10-mediated pulmonary inflammation, providing the potential therapeutic targets for developing the antiviral agents.
Keywords	SARS-coronavirus ; SARS-CoV unique domain (SUD) ; CXCL10 ; NLRP3 inflammasome ; pulmonary inflammation ; Biology (General) ; QH301-705.5 ; Chemistry ; QD1-999
Subject code	572
Language	English
Publishing date	2020-04-01T00:00:00Z
Publisher	MDPI AG
Document type	Article ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article ; Online: Functional assessments of SARS-CoV-2 single-round infectious particles with variant-specific spike proteins on infectivity, drug sensitivity, and antibody neutralization.

Su, Wen-Chi / Chen, Zan-Yu / Chang, Young-Sheng / Jeng, King-Song / Le, Uyen Nguyen Phuong / Chou, Yu-Chi / Kuo, Li-Lan / Melano, Ivonne / Jesse / Wang, Wei-Jan / Song, Ying-Chyi / Li, Sin-Rong / Hung, Mien-Chie / Lai, Michael M C / Lin, Cheng-Wen

Antiviral research

2023 Volume 220, Page(s) 105744

Abstract: Working with severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) is restricted to biosafety level III (BSL-3) laboratory. The study used a trans-complementation system consisting of virus-like particles (VLPs) and DNA-launched replicons to ... ...

Abstract	Working with severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) is restricted to biosafety level III (BSL-3) laboratory. The study used a trans-complementation system consisting of virus-like particles (VLPs) and DNA-launched replicons to generate SARS-CoV-2 single-round infectious particles (SRIPs) with variant-specific spike (S) proteins. S gene of Wuhan-Hu-1 strain (S
MeSH term(s)	Humans ; COVID-19 ; SARS-CoV-2/metabolism ; Spike Glycoprotein, Coronavirus ; Antibodies, Neutralizing ; Antibodies, Viral
Chemical Substances	spike protein, SARS-CoV-2 ; Spike Glycoprotein, Coronavirus ; Antibodies, Neutralizing ; Antibodies, Viral
Language	English
Publishing date	2023-11-07
Publishing country	Netherlands
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	306628-9
ISSN	1872-9096 ; 0166-3542
ISSN (online)	1872-9096
ISSN	0166-3542
DOI	10.1016/j.antiviral.2023.105744
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Article ; Online: Antiviral Action of Tryptanthrin Isolated from

Tsai, Yu-Chi / Lee, Chia-Lin / Yen, Hung-Rong / Chang, Young-Sheng / Lin, Yu-Ping / Huang, Su-Hua / Lin, Cheng-Wen

Biomolecules

2020 Volume 10, Issue 3

Abstract: Strobilanthes ... ...

Abstract	Strobilanthes cusia
MeSH term(s)	Acanthaceae/chemistry ; Acanthaceae/metabolism ; Animals ; Antiviral Agents/chemistry ; Antiviral Agents/isolation & purification ; Antiviral Agents/pharmacology ; Antiviral Agents/therapeutic use ; Cell Line ; Cell Survival/drug effects ; Coronavirus Infections/drug therapy ; Coronavirus Infections/virology ; Coronavirus NL63, Human/isolation & purification ; Coronavirus NL63, Human/physiology ; Humans ; Macaca mulatta ; Medicine, Chinese Traditional ; Plant Extracts/chemistry ; Plant Extracts/pharmacology ; Plant Leaves/chemistry ; Plant Leaves/metabolism ; Quinazolines/chemistry ; Quinazolines/isolation & purification ; Quinazolines/pharmacology ; Quinazolines/therapeutic use ; Virus Internalization/drug effects
Chemical Substances	Antiviral Agents ; Plant Extracts ; Quinazolines ; tryptanthrine (13220-57-0)
Keywords	covid19
Language	English
Publishing date	2020-02-27
Publishing country	Switzerland
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2701262-1
ISSN	2218-273X ; 2218-273X
ISSN (online)	2218-273X
ISSN	2218-273X
DOI	10.3390/biom10030366
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Article ; Online: SARS Unique Domain (SUD) of Severe Acute Respiratory Syndrome Coronavirus Induces NLRP3 Inflammasome-Dependent CXCL10-Mediated Pulmonary Inflammation.

Chang, Young-Sheng / Ko, Bo-Han / Ju, Jyh-Cherng / Chang, Hsin-Hou / Huang, Su-Hua / Lin, Cheng-Wen

International journal of molecular sciences

2020 Volume 21, Issue 9

Abstract: Severe acute respiratory syndrome-associated coronavirus (SARS-CoV) initiates the cytokine/chemokine storm-mediated lung injury. The SARS-CoV unique domain (SUD) with three macrodomains (N, M, and C), showing the G-quadruplex binding activity, was ... ...

Abstract	Severe acute respiratory syndrome-associated coronavirus (SARS-CoV) initiates the cytokine/chemokine storm-mediated lung injury. The SARS-CoV unique domain (SUD) with three macrodomains (N, M, and C), showing the G-quadruplex binding activity, was examined the possible role in SARS pathogenesis in this study. The chemokine profile analysis indicated that SARS-CoV SUD significantly up-regulated the expression of CXCL10, CCL5 and interleukin (IL)-1β in human lung epithelial cells and in the lung tissues of the mice intratracheally instilled with the recombinant plasmids. Among the SUD subdomains, SUD-MC substantially activated AP-1-mediated CXCL10 expression in vitro. In the wild type mice, SARS-CoV SUD-MC triggered the pulmonary infiltration of macrophages and monocytes, inducing CXCL10-mediated inflammatory responses and severe diffuse alveolar damage symptoms. Moreover, SUD-MC actuated NOD-, LRR- and pyrin domain-containing protein 3 (NLRP3) inflammasome-dependent pulmonary inflammation, as confirmed by the NLRP3 inflammasome inhibitor and the NLRP3
MeSH term(s)	Animals ; Bronchoalveolar Lavage Fluid/chemistry ; Bronchoalveolar Lavage Fluid/immunology ; Cell Line ; Chemokine CXCL10/genetics ; Chemokine CXCL10/metabolism ; Disease Models, Animal ; Humans ; Inflammasomes/metabolism ; Lung/metabolism ; Lung/pathology ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; Monocytes/immunology ; Monocytes/metabolism ; NLR Family, Pyrin Domain-Containing 3 Protein/deficiency ; NLR Family, Pyrin Domain-Containing 3 Protein/genetics ; NLR Family, Pyrin Domain-Containing 3 Protein/metabolism ; Pneumonia/pathology ; Pneumonia/virology ; Promoter Regions, Genetic ; SARS Virus/isolation & purification ; SARS Virus/metabolism ; Severe Acute Respiratory Syndrome/pathology ; Severe Acute Respiratory Syndrome/virology ; Up-Regulation ; Viral Proteins/chemistry ; Viral Proteins/genetics ; Viral Proteins/metabolism
Chemical Substances	Chemokine CXCL10 ; Inflammasomes ; NLR Family, Pyrin Domain-Containing 3 Protein ; Nlrp3 protein, mouse ; Viral Proteins
Keywords	covid19
Language	English
Publishing date	2020-04-30
Publishing country	Switzerland
Document type	Journal Article
ZDB-ID	2019364-6
ISSN	1422-0067 ; 1422-0067 ; 1661-6596
ISSN (online)	1422-0067
ISSN	1422-0067 ; 1661-6596
DOI	10.3390/ijms21093179
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Article ; Online: The Rescue and Characterization of Recombinant, Microcephaly-Associated Zika Viruses as Single-Round Infectious Particles.

Lu, Chien-Yi / Lin, Chen-Sheng / Lai, Hsueh-Chou / Yu, Ya-Wen / Liao, Chih-Yi / Su, Wen-Chi / Ko, Bo-Han / Chang, Young-Sheng / Huang, Su-Hua / Lin, Cheng-Wen

Viruses

2019 Volume 11, Issue 11

Abstract: Zika virus (ZIKV) is transmitted ... ...

Abstract	Zika virus (ZIKV) is transmitted by
MeSH term(s)	Cell Line ; DNA, Recombinant ; Genes, Reporter/genetics ; Humans ; Microcephaly/virology ; Replicon/genetics ; Reverse Genetics ; Synthetic Biology ; Viral Load ; Viral Nonstructural Proteins/metabolism ; Virus Assembly ; Virus Replication ; Zika Virus/genetics ; Zika Virus/pathogenicity ; Zika Virus Infection/virology
Chemical Substances	DNA, Recombinant ; Viral Nonstructural Proteins
Keywords	covid19
Language	English
Publishing date	2019-10-31
Publishing country	Switzerland
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	2516098-9
ISSN	1999-4915 ; 1999-4915
ISSN (online)	1999-4915
ISSN	1999-4915
DOI	10.3390/v11111005
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Article: SARS Unique Domain (SUD) of Severe Acute Respiratory Syndrome Coronavirus Induces NLRP3 Inflammasome-Dependent CXCL10-Mediated Pulmonary Inflammation

Chang, Young-Sheng / Ko, Bo-Han / Ju, Jyh-Cherng / Chang, Hsin-Hou / Huang, Su-Hua / Lin, Cheng-Wen

Abstract	Severe acute respiratory syndrome-associated coronavirus (SARS-CoV) initiates the cytokine/chemokine storm-mediated lung injury. The SARS-CoV unique domain (SUD) with three macrodomains (N, M, and C), showing the G-quadruplex binding activity, was examined the possible role in SARS pathogenesis in this study. The chemokine profile analysis indicated that SARS-CoV SUD significantly up-regulated the expression of CXCL10, CCL5 and interleukin (IL)-1ß in human lung epithelial cells and in the lung tissues of the mice intratracheally instilled with the recombinant plasmids. Among the SUD subdomains, SUD-MC substantially activated AP-1-mediated CXCL10 expression in vitro. In the wild type mice, SARS-CoV SUD-MC triggered the pulmonary infiltration of macrophages and monocytes, inducing CXCL10-mediated inflammatory responses and severe diffuse alveolar damage symptoms. Moreover, SUD-MC actuated NOD-, LRR- and pyrin domain-containing protein 3 (NLRP3) inflammasome-dependent pulmonary inflammation, as confirmed by the NLRP3 inflammasome inhibitor and the NLRP3-/- mouse model. This study demonstrated that SARS-CoV SUD modulated NLRP3 inflammasome-dependent CXCL10-mediated pulmonary inflammation, providing the potential therapeutic targets for developing the antiviral agents.
Keywords	covid19
Publisher	WHO
Document type	Article
Note	WHO #Covidence: #143805
Database	COVID19

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Article ; Online: Antiviral activity of glycyrrhizic acid conjugates with amino acid esters against Zika virus.

Baltina, Lidia A / Hour, Mann-Jen / Liu, Ya-Chi / Chang, Young-Sheng / Huang, Su-Hua / Lai, Hsueh-Chou / Kondratenko, Rimma M / Petrova, Svetlana F / Yunusov, Marat S / Lin, Cheng-Wen

Virus research

2020 Volume 294, Page(s) 198290

Abstract: Zika virus (ZIKV) is a new pathogenic flavivirus transmitted by mosquitoes Aedes spp. ZIKV infection is accompanied by serious neurological complications and is especially dangerous for pregnant women, in which it can lead to congenital malformations of ... ...

Abstract	Zika virus (ZIKV) is a new pathogenic flavivirus transmitted by mosquitoes Aedes spp. ZIKV infection is accompanied by serious neurological complications and is especially dangerous for pregnant women, in which it can lead to congenital malformations of the fetus and microcephaly in neonates. Currently, there are no licensed vaccines or specific post-infectious therapies for ZIKV infection. This report is devoted to the study of glycyrrhizic acid (GL) derivatives as ZIKV inhibitors. The inhibitory assays on the cytopathic effect (CPE) and viral infectivity of ZIKV in three different human cell lines revealed that the conjugation of GL with amino acids and their esters (methyl, ethyl) is influenced by the antiviral activity of the compounds. GL conjugates with Glu(OMe)-OMe 11, Glu(OH)-OMe 12, Asp(OMe)-OMe 13, TyrOMe 14, LeuOEt 15, and PheOEt 16 with free COOH groups in the triterpene moiety were active against ZIKV. The most active compounds 13 and 14 have IC50 values of 0.23 μM and 0.09 μM against low doses (MOI = 0.05) of ZIKV strain PRVABC59, 1.20 μM and 0.74 μM against high doses (MOI = 10) of ZIKV strain Natal RGN single-round infectious particles, respectively. The lead compound was 14 with a high selectivity index (SI < 500). Compound 13 showed a higher inhibitory effect on the early stage (entry) of ZIKV replication than compound 14, and was less potent than compound 14 at the post-entry stage, consistent with the docking models. Compounds 13 and 14 also had a strong interaction with the active site pocket of NS5 MTase. Compounds 13 and 14 are recommended for expanded antiviral studies against ZIKV infection.
MeSH term(s)	Amino Acids ; Animals ; Antiviral Agents/therapeutic use ; Chlorocebus aethiops ; Esters/pharmacology ; Esters/therapeutic use ; Female ; Glycyrrhizic Acid/pharmacology ; Glycyrrhizic Acid/therapeutic use ; Humans ; Infant, Newborn ; Pregnancy ; Vero Cells ; Virus Replication ; Zika Virus ; Zika Virus Infection/drug therapy
Chemical Substances	Amino Acids ; Antiviral Agents ; Esters ; Glycyrrhizic Acid (6FO62043WK)
Language	English
Publishing date	2020-12-31
Publishing country	Netherlands
Document type	Journal Article ; Research Support, Non-U.S. Gov't
ZDB-ID	605780-9
ISSN	1872-7492 ; 0168-1702
ISSN (online)	1872-7492
ISSN	0168-1702
DOI	10.1016/j.virusres.2020.198290
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Zs.A 1965: Show issues

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Article: Antiviral Action of Tryptanthrin Isolated from Strobilanthes cusia Leaf against Human Coronavirus NL63

Tsai, Yu-Chi / Lee, Chia-Lin / Yen, Hung-Rong / Chang, Young-Sheng / Lin, Yu-Ping / Huang, Su-Hua / Lin, Cheng-Wen

Biomolecules

Abstract: ... young children, and in the elderly. This study investigated the anti-Human coronavirus NL63 (HCoV-NL63) activity ...

Abstract	Strobilanthes cusia (Nees) Kuntze is a Chinese herbal medicine used in the treatment of respiratory virus infections. The methanol extract of S. cusia leaf contains chemical components such as ß-sitosterol, indirubin, tryptanthrin, betulin, indigodole A, and indigodole B that have diverse biological activities. However, the antiviral action of S. cusia leaf and its components against human coronavirus remains to be elucidated. Human coronavirus NL63 infection is frequent among immunocompromised individuals, young children, and in the elderly. This study investigated the anti-Human coronavirus NL63 (HCoV-NL63) activity of the methanol extract of S. cusia leaf and its major components. The methanol extract of S. cusia leaf effectively inhibited the cytopathic effect (CPE) and virus yield (IC50 = 0.64 µg/mL) in HCoV-NL63-infected cells. Moreover, this extract potently inhibited the HCoV-NL63 infection in a concentration-dependent manner. Among the six components identified in the methanol extract of S. cusia leaf, tryptanthrin and indigodole B (5aR-ethyltryptanthrin) exhibited potent antiviral activity in reducing the CPE and progeny virus production. The IC50 values against virus yield were 1.52 µM and 2.60 µM for tryptanthrin and indigodole B, respectively. Different modes of time-of-addition/removal assay indicated that tryptanthrin prevented the early and late stages of HCoV-NL63 replication, particularly by blocking viral RNA genome synthesis and papain-like protease 2 activity. Notably, tryptanthrin (IC50 = 0.06 µM) and indigodole B (IC50 = 2.09 µM) exhibited strong virucidal activity as well. This study identified tryptanthrin as the key active component of S. cusia leaf methanol extract that acted against HCoV-NL63 in a cell-type independent manner. The results specify that tryptanthrin possesses antiviral potential against HCoV-NL63 infection.
Keywords	covid19
Publisher	WHO
Document type	Article
Note	WHO #Covidence: #13514
Database	COVID19

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