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  1. Article ; Online: Elastic scattering spectroscopy for early detection of breast cancer: partially supervised Bayesian image classification of scanned sentinel lymph nodes.

    Zhu, Ying / Fearn, Tom / Chicken, D Wayne / Austwick, Martin R / Somasundaram, Santosh K / Mosse, Charles A / Clark, Benjamin / Bigio, Irving J / Keshtgar, Mohammed R S / Bown, Stephen G

    Journal of biomedical optics

    2018  Volume 23, Issue 8, Page(s) 1–9

    Abstract: Sentinel lymph node biopsy is a standard diagnosis procedure to determine whether breast cancer has spread to the lymph glands in the armpit (the axillary nodes). The metastatic status of the sentinel node (the first node in the axillary chain that ... ...

    Abstract Sentinel lymph node biopsy is a standard diagnosis procedure to determine whether breast cancer has spread to the lymph glands in the armpit (the axillary nodes). The metastatic status of the sentinel node (the first node in the axillary chain that drains the affected breast) is the determining factor in surgery between conservative lumpectomy and more radical mastectomy including axillary node excision. The traditional assessment of the node requires sample preparation and pathologist interpretation. An automated elastic scattering spectroscopy (ESS) scanning device was constructed to take measurements from the entire cut surface of the excised sentinel node and to produce ESS images for cancer diagnosis. Here, we report on a partially supervised image classification scheme employing a Bayesian multivariate, finite mixture model with a Markov random field (MRF) spatial prior. A reduced dimensional space was applied to represent the scanning data of the node by a statistical image, in which normal, metastatic, and nonnodal-tissue pixels are identified. Our results show that our model enables rapid imaging of lymph nodes. It can be used to recognize nonnodal areas automatically at the same time as diagnosing sentinel node metastases with sensitivity and specificity of 85% and 94%, respectively. ESS images can help surgeons by providing a reliable and rapid intraoperative determination of sentinel nodal metastases in breast cancer.
    MeSH term(s) Bayes Theorem ; Breast Neoplasms/diagnostic imaging ; Breast Neoplasms/pathology ; Early Detection of Cancer/methods ; Elasticity Imaging Techniques/methods ; Female ; Humans ; Image Interpretation, Computer-Assisted/methods ; Markov Chains ; Principal Component Analysis ; Sensitivity and Specificity ; Sentinel Lymph Node/diagnostic imaging ; Sentinel Lymph Node/pathology ; Spectrum Analysis/methods
    Language English
    Publishing date 2018-08-10
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 1309154-2
    ISSN 1560-2281 ; 1083-3668
    ISSN (online) 1560-2281
    ISSN 1083-3668
    DOI 10.1117/1.JBO.23.8.085004
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Correction

    Emma Terama / Melanie Smallman / Simon J Lock / Charlotte Johnson / Martin Zaltz Austwick

    PLoS ONE, Vol 12, Iss 2, p e

    Beyond Academia - Interrogating Research Impact in the Research Excellence Framework.

    2017  Volume 0172817

    Abstract: This corrects the article DOI:10.1371/journal.pone.0168533.]. ...

    Abstract [This corrects the article DOI:10.1371/journal.pone.0168533.].
    Keywords Medicine ; R ; Science ; Q
    Language English
    Publishing date 2017-01-01T00:00:00Z
    Publisher Public Library of Science (PLoS)
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: Beyond Academia - Interrogating Research Impact in the Research Excellence Framework.

    Emma Terama / Melanie Smallman / Simon J Lock / Charlotte Johnson / Martin Zaltz Austwick

    PLoS ONE, Vol 11, Iss 12, p e

    2016  Volume 0168533

    Abstract: Big changes to the way in which research funding is allocated to UK universities were brought about in the Research Excellence Framework (REF), overseen by the Higher Education Funding Council, England. Replacing the earlier Research Assessment Exercise, ...

    Abstract Big changes to the way in which research funding is allocated to UK universities were brought about in the Research Excellence Framework (REF), overseen by the Higher Education Funding Council, England. Replacing the earlier Research Assessment Exercise, the purpose of the REF was to assess the quality and reach of research in UK universities-and allocate funding accordingly. For the first time, this included an assessment of research 'impact', accounting for 20% of the funding allocation. In this article we use a text mining technique to investigate the interpretations of impact put forward via impact case studies in the REF process. We find that institutions have developed a diverse interpretation of impact, ranging from commercial applications to public and cultural engagement activities. These interpretations of impact vary from discipline to discipline and between institutions, with more broad-based institutions depicting a greater variety of impacts. Comparing the interpretations with the score given by REF, we found no evidence of one particular interpretation being more highly rewarded than another. Importantly, we also found a positive correlation between impact score and [overall research] quality score, suggesting that impact is not being achieved at the expense of research excellence.
    Keywords Medicine ; R ; Science ; Q
    Subject code 306
    Language English
    Publishing date 2016-01-01T00:00:00Z
    Publisher Public Library of Science (PLoS)
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: The structure of spatial networks and communities in bicycle sharing systems.

    Martin Zaltz Austwick / Oliver O'Brien / Emanuele Strano / Matheus Viana

    PLoS ONE, Vol 8, Iss 9, p e

    2013  Volume 74685

    Abstract: Bicycle sharing systems exist in hundreds of cities around the world, with the aim of providing a form of public transport with the associated health and environmental benefits of cycling without the burden of private ownership and maintenance. Five ... ...

    Abstract Bicycle sharing systems exist in hundreds of cities around the world, with the aim of providing a form of public transport with the associated health and environmental benefits of cycling without the burden of private ownership and maintenance. Five cities have provided research data on the journeys (start and end time and location) taking place in their bicycle sharing system. In this paper, we employ visualization, descriptive statistics and spatial and network analysis tools to explore system usage in these cities, using techniques to investigate features specific to the unique geographies of each, and uncovering similarities between different systems. Journey displacement analysis demonstrates similar journey distances across the cities sampled, and the (out)strength rank curve for the top 50 stands in each city displays a similar scaling law for each. Community detection in the derived network can identify local pockets of use, and spatial network corrections provide the opportunity for insight above and beyond proximity/popularity correlations predicted by simple spatial interaction models.
    Keywords Medicine ; R ; Science ; Q
    Subject code 910
    Language English
    Publishing date 2013-01-01T00:00:00Z
    Publisher Public Library of Science (PLoS)
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Scanning elastic scattering spectroscopy detects metastatic breast cancer in sentinel lymph nodes.

    Austwick, Martin R / Clark, Benjamin / Mosse, Charles A / Johnson, Kristie / Chicken, D Wayne / Somasundaram, Santosh K / Calabro, Katherine W / Zhu, Ying / Falzon, Mary / Kocjan, Gabrijela / Fearn, Tom / Bown, Stephen G / Bigio, Irving J / Keshtgar, Mohammed R S

    Journal of biomedical optics

    2010  Volume 15, Issue 4, Page(s) 47001

    Abstract: A novel method for rapidly detecting metastatic breast cancer within excised sentinel lymph node(s) of the axilla is presented. Elastic scattering spectroscopy (ESS) is a point-contact technique that collects broadband optical spectra sensitive to ... ...

    Abstract A novel method for rapidly detecting metastatic breast cancer within excised sentinel lymph node(s) of the axilla is presented. Elastic scattering spectroscopy (ESS) is a point-contact technique that collects broadband optical spectra sensitive to absorption and scattering within the tissue. A statistical discrimination algorithm was generated from a training set of nearly 3000 clinical spectra and used to test clinical spectra collected from an independent set of nodes. Freshly excised nodes were bivalved and mounted under a fiber-optic plate. Stepper motors raster-scanned a fiber-optic probe over the plate to interrogate the node's cut surface, creating a 20x20 grid of spectra. These spectra were analyzed to create a map of cancer risk across the node surface. Rules were developed to convert these maps to a prediction for the presence of cancer in the node. Using these analyses, a leave-one-out cross-validation to optimize discrimination parameters on 128 scanned nodes gave a sensitivity of 69% for detection of clinically relevant metastases (71% for macrometastases) and a specificity of 96%, comparable to literature results for touch imprint cytology, a standard technique for intraoperative diagnosis. ESS has the advantage of not requiring a pathologist to review the tissue sample.
    MeSH term(s) Algorithms ; Breast Neoplasms/diagnosis ; Breast Neoplasms/secondary ; Carcinoma/diagnosis ; Carcinoma/secondary ; Diagnosis, Computer-Assisted/methods ; Elasticity Imaging Techniques/methods ; Female ; Humans ; Light ; Lymphatic Metastasis ; Reproducibility of Results ; Scattering, Radiation ; Sensitivity and Specificity ; Sentinel Lymph Node Biopsy/methods ; Spectrum Analysis/methods
    Language English
    Publishing date 2010-09-09
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 1309154-2
    ISSN 1560-2281 ; 1083-3668
    ISSN (online) 1560-2281
    ISSN 1083-3668
    DOI 10.1117/1.3463005
    Database MEDical Literature Analysis and Retrieval System OnLINE

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