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  1. Article ; Online: FADngs: Federated Learning for Anomaly Detection.

    Dong, Boyu / Chen, Dong / Wu, Yu / Tang, Siliang / Zhuang, Yueting

    IEEE transactions on neural networks and learning systems

    2024  Volume PP

    Abstract: With the increasing demand for data privacy, federated learning (FL) has gained popularity for various applications. Most existing FL works focus on the classification task, overlooking those scenarios where anomaly detection may also require privacy- ... ...

    Abstract With the increasing demand for data privacy, federated learning (FL) has gained popularity for various applications. Most existing FL works focus on the classification task, overlooking those scenarios where anomaly detection may also require privacy-preserving. Traditional anomaly detection algorithms cannot be directly applied to the FL setting due to false and missing detection issues. Moreover, with common aggregation methods used in FL (e.g., averaging model parameters), the global model cannot keep the capacities of local models in discriminating anomalies deviating from local distributions, which further degrades the performance. For the aforementioned challenges, we propose Federated Anomaly Detection with Noisy Global Density Estimation, and Self-supervised Ensemble Distillation (FADngs). Specifically, FADngs aligns the knowledge of data distributions from each client by sharing processed density functions. Besides, FADngs trains local models in an improved contrastive learning way that learns more discriminative representations specific for anomaly detection based on the shared density functions. Furthermore, FADngs aggregates capacities by ensemble distillation, which distills the knowledge learned from different distributions to the global model. Our experiments demonstrate that the proposed method significantly outperforms state-of-the-art federated anomaly detection methods. We also empirically show that the shared density function is privacy-preserving. The code for the proposed method is provided for research purposes https://github.com/kanade00/Federated_Anomaly_detection.
    Language English
    Publishing date 2024-01-19
    Publishing country United States
    Document type Journal Article
    ISSN 2162-2388
    ISSN (online) 2162-2388
    DOI 10.1109/TNNLS.2024.3350660
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Woody and herbaceous wastes for the remediation of polluted waters of wetlands.

    Liu, Xiaodong / Sun, Yerong / Tang, Yueting / Wang, Min / Xiao, Bing

    Chemosphere

    2023  Volume 335, Page(s) 139132

    Abstract: Plants wastes play an important role during water remediation in wetlands. Plant waste is made into biochar, which is usually used directly or as a water biofilter to remove pollutants. While, the water remediation effect of combination for biochar from ... ...

    Abstract Plants wastes play an important role during water remediation in wetlands. Plant waste is made into biochar, which is usually used directly or as a water biofilter to remove pollutants. While, the water remediation effect of combination for biochar from woody and herbaceous wastes coupling with substrate types in CWs have not been fully explored. To explore the water remediation effect of combination for biochar coupling with substrate on pH, Turbidity, COD, NH
    MeSH term(s) Wetlands ; Plants ; Water ; Environmental Pollutants ; Nitrogen ; Waste Disposal, Fluid
    Chemical Substances biochar ; Water (059QF0KO0R) ; Environmental Pollutants ; Nitrogen (N762921K75)
    Language English
    Publishing date 2023-06-05
    Publishing country England
    Document type Journal Article
    ZDB-ID 120089-6
    ISSN 1879-1298 ; 0045-6535 ; 0366-7111
    ISSN (online) 1879-1298
    ISSN 0045-6535 ; 0366-7111
    DOI 10.1016/j.chemosphere.2023.139132
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Attribute-driven streaming edge partitioning with reconciliations for distributed graph neural network training.

    Mu, Zongshen / Tang, Siliang / Zhuang, Yueting / Yu, Dianhai

    Neural networks : the official journal of the International Neural Network Society

    2023  Volume 165, Page(s) 987–998

    Abstract: Current distributed graph training frameworks evenly partition a large graph into small chunks to suit distributed storage, leverage a uniform interface to access neighbors, and train graph neural networks in a cluster of machines to update weights. ... ...

    Abstract Current distributed graph training frameworks evenly partition a large graph into small chunks to suit distributed storage, leverage a uniform interface to access neighbors, and train graph neural networks in a cluster of machines to update weights. Nevertheless, they consider a separate design of storage and training, resulting in huge communication costs for retrieving neighborhoods. During the storage phase, traditional heuristic graph partitioning not only suffers from memory overhead because of loading the full graph into the memory but also damages semantically related structures because of its neglecting meaningful node attributes. What is more, in the weight-update phase, directly averaging synchronization is difficult to tackle with heterogeneous local models where each machine's data are loaded from different subgraphs, resulting in slow convergence. To solve these problems, we propose a novel distributed graph training approach, attribute-driven streaming edge partitioning with reconciliations (ASEPR), where the local model loads only the subgraph stored on its own machine to make fewer communications. ASEPR firstly clusters nodes with similar attributes in the same partition to maintain semantic structure and keep multihop neighbor locality. Then streaming partitioning combined with attribute clustering is applied to subgraph assignment to alleviate memory overhead. After local graph neural network training on distributed machines, we deploy cross-layer reconciliation strategies for heterogeneous local models to improve the averaged global model by knowledge distillation and contrastive learning. Extensive experiments conducted on four large graph datasets on node classification and link prediction tasks show that our model outperforms DistDGL, with fewer resource requirements and up to quadruple the convergence speed.
    MeSH term(s) Learning ; Cluster Analysis ; Communication ; Heuristics ; Neural Networks, Computer
    Language English
    Publishing date 2023-06-28
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 740542-x
    ISSN 1879-2782 ; 0893-6080
    ISSN (online) 1879-2782
    ISSN 0893-6080
    DOI 10.1016/j.neunet.2023.06.026
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Flow performance of porous implants with different geometry: Line, surface, and volume structures.

    Tang, Zhuxun / Zhou, Yueting / Ma, Lifang / Li, Jian

    International journal of bioprinting

    2023  Volume 9, Issue 3, Page(s) 700

    Abstract: Additive manufacturing has enormous advantage of personalized adaptation. Particularly, porous implants have been widely used in clinical practice. Porous implant has the advantages and abilities to promote tissue growth and mass transfer, which are ... ...

    Abstract Additive manufacturing has enormous advantage of personalized adaptation. Particularly, porous implants have been widely used in clinical practice. Porous implant has the advantages and abilities to promote tissue growth and mass transfer, which are closely related to pore morphology. The purpose of this study is to investigate the effects of three porous structures, i.e., line structure, surface structure, and volume structure, on the flow properties of implants at different porosity. Therefore, a unit cell was selected from each type of structure (oct truss [OT], gyroid [G], and schwarz p [P]) as a typical cell, where OT is a line structure, G is a surface structure, and P is a volume structure. The scaffolds with different porosity of these cells were customized, and the shape parameters were measured and calculated. Then, the flow performance of three different scaffolds in Dulbecco's modified Eagle's medium was simulated by using computational fluid dynamics, and the flow velocity, permeability, and wall shear stress, which can reflect their biological properties, were calculated and compared. The results showed that the pore shape and porosity of porous implants greatly affected the physical parameters and performance of structures. These findings will contribute to unit cell selection and future performance optimization of porous implants.
    Language English
    Publishing date 2023-03-06
    Publishing country Singapore
    Document type Journal Article
    ZDB-ID 2834694-4
    ISSN 2424-8002 ; 2424-8002
    ISSN (online) 2424-8002
    ISSN 2424-8002
    DOI 10.18063/ijb.700
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Mitigating Lactate-Associated Immunosuppression against Intracellular Bacteria Using Thermoresponsive Nanoparticles for Septic Arthritis Therapy.

    Xiao, Shuya / Yi, Jundan / Zhang, Yueting / Su, Mingyue / Tang, Rongbing

    Nano letters

    2023  Volume 23, Issue 8, Page(s) 3298–3308

    Abstract: Intracellular bacteria are the major contributor to the intractability of septic arthritis, which are sequestered in macrophages to undermine the innate immune response and avoid the antibacterial effect of antibiotics due to the obstruction of the cell ... ...

    Abstract Intracellular bacteria are the major contributor to the intractability of septic arthritis, which are sequestered in macrophages to undermine the innate immune response and avoid the antibacterial effect of antibiotics due to the obstruction of the cell membrane. Herein, we report a thermoresponsive nanoparticle, which consists of a phase-change material shell (fatty acids) and an oxygen-producing core (CaO
    MeSH term(s) Humans ; Lactic Acid ; Vancomycin ; Oxygen ; Reactive Oxygen Species/metabolism ; Immunosuppression Therapy ; Arthritis, Infectious/drug therapy ; Anti-Bacterial Agents/pharmacology ; Anti-Bacterial Agents/therapeutic use ; Nanoparticles ; Bacteria/metabolism
    Chemical Substances Lactic Acid (33X04XA5AT) ; Vancomycin (6Q205EH1VU) ; Oxygen (S88TT14065) ; Reactive Oxygen Species ; Anti-Bacterial Agents
    Language English
    Publishing date 2023-04-18
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1530-6992
    ISSN (online) 1530-6992
    DOI 10.1021/acs.nanolett.3c00221
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Uncovering Evolutionary Adaptations in Common Warthogs through Genomic Analyses.

    Yang, Xintong / Li, Xingzheng / Bao, Qi / Wang, Zhen / He, Sang / Qu, Xiaolu / Tang, Yueting / Song, Bangmin / Huang, Jieping / Yi, Guoqiang

    Genes

    2024  Volume 15, Issue 2

    Abstract: In the Suidae family, warthogs show significant survival adaptability and trait specificity. This study offers a comparative genomic analysis between the warthog and other Suidae species, including the Luchuan pig, Duroc pig, and Red River hog. By ... ...

    Abstract In the Suidae family, warthogs show significant survival adaptability and trait specificity. This study offers a comparative genomic analysis between the warthog and other Suidae species, including the Luchuan pig, Duroc pig, and Red River hog. By integrating the four genomes with sequences from the other four species, we identified 8868 single-copy orthologous genes. Based on 8868 orthologous protein sequences, phylogenetic assessments highlighted divergence timelines and unique evolutionary branches within suid species. Warthogs exist on different evolutionary branches compared to DRCs and LCs, with a divergence time preceding that of DRC and LC. Contraction and expansion analyses of warthog gene families have been conducted to elucidate the mechanisms of their evolutionary adaptations. Using GO, KEGG, and MGI databases, warthogs showed a preference for expansion in sensory genes and contraction in metabolic genes, underscoring phenotypic diversity and adaptive evolution direction. Associating genes with the QTLdb-pigSS11 database revealed links between gene families and immunity traits. The overlap of olfactory genes in immune-related QTL regions highlighted their importance in evolutionary adaptations. This work highlights the unique evolutionary strategies and adaptive mechanisms of warthogs, guiding future research into the distinct adaptability and disease resistance in pigs, particularly focusing on traits such as resistance to African Swine Fever Virus.
    MeSH term(s) Swine/genetics ; Animals ; Phylogeny ; African Swine Fever Virus ; Genome/genetics ; Genomics ; Phenotype
    Language English
    Publishing date 2024-01-27
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2527218-4
    ISSN 2073-4425 ; 2073-4425
    ISSN (online) 2073-4425
    ISSN 2073-4425
    DOI 10.3390/genes15020166
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Deep learning methods for fully automated dental age estimation on orthopantomograms.

    Shi, Yuchao / Ye, Zelin / Guo, Jixiang / Tang, Yueting / Dong, Wenxuan / Dai, Jiaqi / Miao, Yu / You, Meng

    Clinical oral investigations

    2024  Volume 28, Issue 3, Page(s) 198

    Abstract: Objectives: This study aimed to use all permanent teeth as the target and establish an automated dental age estimation method across all developmental stages of permanent teeth, accomplishing all the essential steps of tooth determination, tooth ... ...

    Abstract Objectives: This study aimed to use all permanent teeth as the target and establish an automated dental age estimation method across all developmental stages of permanent teeth, accomplishing all the essential steps of tooth determination, tooth development staging, and dental age assessment.
    Methods: A three-step framework for automatically estimating dental age was developed for children aged 3 to 15. First, a YOLOv3 network was employed to complete the tasks of tooth localization and numbering on a digital orthopantomogram. Second, a novel network named SOS-Net was established for accurate tooth development staging based on a modified Demirjian method. Finally, the dental age assessment procedure was carried out through a single-group meta-analysis utilizing the statistical data derived from our reference dataset.
    Results: The performance tests showed that the one-stage YOLOv3 detection network attained an overall mean average precision 50 of 97.50 for tooth determination. The proposed SOS-Net method achieved an average tooth development staging accuracy of 82.97% for a full dentition. The dental age assessment validation test yielded an MAE of 0.72 years with a full dentition (excluding the third molars) as its input.
    Conclusions: The proposed automated framework enhances the dental age estimation process in a fast and standard manner, enabling the reference of any accessible population.
    Clinical relevance: The tooth development staging network can facilitate the precise identification of permanent teeth with abnormal growth, improving the effectiveness and comprehensiveness of dental diagnoses using pediatric orthopantomograms.
    MeSH term(s) Humans ; Child ; Deep Learning ; Molar, Third ; Odontogenesis ; Radiography, Panoramic
    Language English
    Publishing date 2024-03-07
    Publishing country Germany
    Document type Meta-Analysis ; Journal Article
    ZDB-ID 1364490-7
    ISSN 1436-3771 ; 1432-6981
    ISSN (online) 1436-3771
    ISSN 1432-6981
    DOI 10.1007/s00784-024-05598-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Circulating exosomal microRNA-4497 as a potential biomarker for metastasis and prognosis in non-small-cell lung cancer.

    Zheng, Bokun / Peng, Mingcheng / Gong, Jun / Li, Changsheng / Cheng, Hongbing / Li, Yirong / Tang, Yueting

    Experimental biology and medicine (Maywood, N.J.)

    2023  Volume 248, Issue 16, Page(s) 1403–1413

    Abstract: Circulating exosomal microRNAs (miRNAs) have shown great potential for the diagnosis, prognosis, and treatment monitoring of patients with non-small-cell lung cancer (NSCLC). Our main purpose was to determine the clinical value of serum exosomal miR-4497 ...

    Abstract Circulating exosomal microRNAs (miRNAs) have shown great potential for the diagnosis, prognosis, and treatment monitoring of patients with non-small-cell lung cancer (NSCLC). Our main purpose was to determine the clinical value of serum exosomal miR-4497 as a new non-invasive biomarker for NSCLC. The exoRNeasy Kit (QIAGEN, Hilden, Germany) was used to isolate exosomes and exoRNA from the serum of 84 patients with NSCLC (NSCLC group), 30 patients with benign lung lesion (BLL group), and 47 healthy controls. Six serum exosomal miRNAs (Let-7b-5p, miR-122-5p, miR-155-5p, miR-223-3p, miR-320c, and miR-4497) were selected as candidate miRNAs and analyzed using real-time qPCR, among which miR-4497 displayed the most striking differences. Exosomal miR-4497 expressed significantly lower in NSCLC than in BLL patients and healthy controls (
    MeSH term(s) Humans ; Carcinoma, Non-Small-Cell Lung/pathology ; Lung Neoplasms/pathology ; Biomarkers, Tumor/genetics ; MicroRNAs/genetics ; Disease-Free Survival
    Chemical Substances Biomarkers, Tumor ; MicroRNAs
    Language English
    Publishing date 2023-08-07
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 4015-0
    ISSN 1535-3699 ; 1525-1373 ; 0037-9727
    ISSN (online) 1535-3699 ; 1525-1373
    ISSN 0037-9727
    DOI 10.1177/15353702231184223
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Woody and herbaceous wastes for the remediation of polluted waters of wetlands

    Liu, Xiaodong / Sun, Yerong / Tang, Yueting / Wang, Min / Xiao, Bing

    Chemosphere. 2023 Sept., v. 335 p.139132-

    2023  

    Abstract: Plants wastes play an important role during water remediation in wetlands. Plant waste is made into biochar, which is usually used directly or as a water biofilter to remove pollutants. While, the water remediation effect of combination for biochar from ... ...

    Abstract Plants wastes play an important role during water remediation in wetlands. Plant waste is made into biochar, which is usually used directly or as a water biofilter to remove pollutants. While, the water remediation effect of combination for biochar from woody and herbaceous wastes coupling with substrate types in CWs have not been fully explored. To explore the water remediation effect of combination for biochar coupling with substrate on pH, Turbidity, COD, NH₄⁺-N, TN and TP, four plant configuration modes combining seven woody plants and eight herbaceous plants (Plants A, Plants B, Plants C, Plants D) were coupled with three substrate types (Substrate 1, Substrate 2, Substrate 3) as 12 experiment groups, using water detection methods and significant differences test (LSD) to analyze. Results showed: (1) Compared to Substrate 3, Substrate 1 and Substrate 2 removed significantly higher in pollutants concentration (p < 0.05); (2) NH₄⁺-N final concentration in Plants C and Plants D were both significantly lower than Plants A and Plants B coupling with Substrate 1 and Substrate 2 (p < 0.05). The TN final concentration of Plants C was significantly lower than Plants A in Substrate 1 (p < 0.05), and Plants A's turbidity was significantly lower than Plants C and Plants D's in Substrate 2 (p < 0.05); (3) The pollutants removal of group A1, A2, B1, B2, C1, C2, D1 and D2 were significantly higher than other experiment groups (p < 0.05). Group A2, B2, C1 and D1 had the best water remediation effect and better stability of plant community. Findings in this study will be beneficial for remediating polluted water and building sustainable wetlands.
    Keywords biochar ; biofilters ; pH ; plant communities ; remediation ; turbidity ; wastes ; water pollution ; Wetland landscape ; Water remediation ; Aquatic plants configuration ; Woody wastes ; Herbaceous wastes
    Language English
    Dates of publication 2023-09
    Publishing place Elsevier Ltd
    Document type Article ; Online
    ZDB-ID 120089-6
    ISSN 1879-1298 ; 0045-6535 ; 0366-7111
    ISSN (online) 1879-1298
    ISSN 0045-6535 ; 0366-7111
    DOI 10.1016/j.chemosphere.2023.139132
    Database NAL-Catalogue (AGRICOLA)

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  10. Article ; Online: An investigation on 3-hydroxybenzaldehyde for exploring terahertz low-frequency vibration modes with quasi-harmonic approximation method.

    Chen, Tao / Tang, Zongqing / Liang, Dihan / Huang, Yueting / Yin, Xianhua

    Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy

    2022  Volume 287, Issue Pt 1, Page(s) 122046

    Abstract: 3-Hydroxybenzaldehyde (3-HBA) was investigated in the range of 0.6-2.8 THz by terahertz time-domain spectroscopy (THz-TDS) and solid-state density functional theory (ss-DFT) with first-principles calculation. Four distinct peaks were found respectively, ... ...

    Abstract 3-Hydroxybenzaldehyde (3-HBA) was investigated in the range of 0.6-2.8 THz by terahertz time-domain spectroscopy (THz-TDS) and solid-state density functional theory (ss-DFT) with first-principles calculation. Four distinct peaks were found respectively, and among them, the intensity disparity between experiment and simulation spectra at 2.04 THz was recognized as the biggest inconsistency. Considering thermal behavior can be responsible for this, quasi-harmonic approximation (QHA) method was introduced to mimic the unit cell volume expansion. According to vibrational modes analysis, it was ascertained that the biggest vibrational modes discrepancy was also located at 2.04 THz. Molecules in 0% and 4% unit cell expansion exhibit an opposite rotational direction in a-b plane compared with 2% unit cell expansion. Noncovalent intermolecular interactions were investigated with independent gradient model (IGM), and the result indicates that hydrogen bonding is the dominating noncovalent interaction of 3-HBA. While calculating systematic potential energy to the displaced bonds stretching involving hydrogen atoms, it was found the anomalous potential energy variation to the bond stretching provides a possible explanation for the rotation direction divergence, that is, the rotation direction divergence can be related to some hydrogen atoms seeking lower overall potential energy around their equilibrium positions during bond stretching in response to the variational intermolecular van der Waals force. This research combined THz-TDS with the quasi-harmonic approximation method, elucidating the principle of vibrational characteristics in different volumes, which is beneficial to the investigation of the terahertz low-frequency vibration to thermal behavior as a reference in biochemistry and other fields.
    Language English
    Publishing date 2022-10-28
    Publishing country England
    Document type Journal Article
    ZDB-ID 210413-1
    ISSN 1873-3557 ; 0370-8322 ; 0584-8539 ; 1386-1425
    ISSN (online) 1873-3557
    ISSN 0370-8322 ; 0584-8539 ; 1386-1425
    DOI 10.1016/j.saa.2022.122046
    Database MEDical Literature Analysis and Retrieval System OnLINE

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