LIVIVO - The Search Portal for Life Sciences

zur deutschen Oberfläche wechseln
Advanced search

Search results

Result 1 - 10 of total 19

Search options

  1. Article ; Online: NME proteins regulate class switch recombination.

    Zheng, Simin / Kusnadi, Anthony / Choi, Jee Eun / Vuong, Bao Q / Rhodes, Daniela / Chaudhuri, Jayanta

    FEBS letters

    2018  Volume 593, Issue 1, Page(s) 80–87

    Abstract: Class switch recombination (CSR) in B cells involves deletion-recombination at switch (S) region DNA and is important for the diversification of antibody isotypes during an immune response. Here, we identify two NME [NM23/NDPK (nucleoside diphosphate ... ...

    Abstract Class switch recombination (CSR) in B cells involves deletion-recombination at switch (S) region DNA and is important for the diversification of antibody isotypes during an immune response. Here, we identify two NME [NM23/NDPK (nucleoside diphosphate kinase)] isoforms, NME1 and NME2, as novel players in this process. Knockdown of NME2 leads to decreased CSR, while knockdown of the highly homologous NME1 results in increased CSR. Interestingly, these NME proteins also display differential occupancy at S regions during CSR despite their homology; NME1 binds to S regions prior to stimulation, while NME2 binds to S regions only after stimulation. To the best of our knowledge, this represents the first report of a role for these proteins in the regulation of CSR.
    MeSH term(s) Animals ; B-Lymphocytes/metabolism ; Cell Proliferation ; Cells, Cultured ; Gene Knockdown Techniques ; Immunoglobulin Class Switching ; Immunoglobulin Heavy Chains/chemistry ; Immunoglobulin Heavy Chains/metabolism ; Immunoglobulin Switch Region ; Mice ; NM23 Nucleoside Diphosphate Kinases/genetics ; NM23 Nucleoside Diphosphate Kinases/metabolism ; Protein Binding
    Chemical Substances Immunoglobulin Heavy Chains ; NM23 Nucleoside Diphosphate Kinases ; Nme1 protein, mouse (EC 2.7.4.6) ; Nme2 protein, mouse (EC 2.7.4.6)
    Language English
    Publishing date 2018-11-23
    Publishing country England
    Document type Comparative Study ; Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 212746-5
    ISSN 1873-3468 ; 0014-5793
    ISSN (online) 1873-3468
    ISSN 0014-5793
    DOI 10.1002/1873-3468.13290
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  2. Article ; Online: Severely ill COVID-19 patients display impaired exhaustion features in SARS-CoV-2-reactive CD8

    Kusnadi, Anthony / Ramírez-Suástegui, Ciro / Fajardo, Vicente / Chee, Serena J / Meckiff, Benjamin J / Simon, Hayley / Pelosi, Emanuela / Seumois, Grégory / Ay, Ferhat / Vijayanand, Pandurangan / Ottensmeier, Christian H

    Science immunology

    2021  Volume 6, Issue 55

    Abstract: The molecular properties of ... ...

    Abstract The molecular properties of CD8
    MeSH term(s) Adult ; Aged ; Aged, 80 and over ; CD8-Positive T-Lymphocytes/immunology ; COVID-19/immunology ; Female ; Glycolysis/immunology ; Humans ; Immunologic Memory/immunology ; Male ; Middle Aged ; NF-kappa B/immunology ; SARS-CoV-2/immunology ; Signal Transduction/immunology ; Single-Cell Analysis/methods ; Young Adult
    Chemical Substances NF-kappa B
    Language English
    Publishing date 2021-01-21
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ISSN 2470-9468
    ISSN (online) 2470-9468
    DOI 10.1126/sciimmunol.abe4782
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  3. Article: NME proteins regulate class switch recombination

    Zheng, Simin / Kusnadi, Anthony / Choi, Jee Eun / Vuong, Bao Q. / Rhodes, Daniela / Chaudhuri, Jayanta

    FEBS letters. 2019 Jan., v. 593, no. 1

    2019  

    Abstract: Class switch recombination (CSR) in B cells involves deletion‐recombination at switch (S) region DNA and is important for the diversification of antibody isotypes during an immune response. Here, we identify two NME [NM23/NDPK (nucleoside diphosphate ... ...

    Abstract Class switch recombination (CSR) in B cells involves deletion‐recombination at switch (S) region DNA and is important for the diversification of antibody isotypes during an immune response. Here, we identify two NME [NM23/NDPK (nucleoside diphosphate kinase)] isoforms, NME1 and NME2, as novel players in this process. Knockdown of NME2 leads to decreased CSR, while knockdown of the highly homologous NME1 results in increased CSR. Interestingly, these NME proteins also display differential occupancy at S regions during CSR despite their homology; NME1 binds to S regions prior to stimulation, while NME2 binds to S regions only after stimulation. To the best of our knowledge, this represents the first report of a role for these proteins in the regulation of CSR.
    Keywords DNA ; antibodies ; immune response ; nucleoside-diphosphate kinase
    Language English
    Dates of publication 2019-01
    Size p. 80-87.
    Publishing place John Wiley & Sons, Ltd
    Document type Article
    Note JOURNAL ARTICLE
    ZDB-ID 212746-5
    ISSN 1873-3468 ; 0014-5793
    ISSN (online) 1873-3468
    ISSN 0014-5793
    DOI 10.1002/1873-3468.13290
    Database NAL-Catalogue (AGRICOLA)

    More links

    Kategorien

  4. Article: Single-cell transcriptomic analysis of SARS-CoV-2 reactive CD4

    Meckiff, Benjamin J / Ramírez-Suástegui, Ciro / Fajardo, Vicente / Chee, Serena J / Kusnadi, Anthony / Simon, Hayley / Grifoni, Alba / Pelosi, Emanuela / Weiskopf, Daniela / Sette, Alessandro / Ay, Ferhat / Seumois, Grégory / Ottensmeier, Christian H / Vijayanand, Pandurangan

    bioRxiv : the preprint server for biology

    2020  

    Abstract: The contribution of ... ...

    Abstract The contribution of CD4
    Keywords covid19
    Language English
    Publishing date 2020-06-13
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2020.06.12.148916
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  5. Article: Severely ill COVID-19 patients display augmented functional properties in SARS-CoV-2-reactive CD8

    Kusnadi, Anthony / Ramírez-Suástegui, Ciro / Fajardo, Vicente / Chee, Serena J / Meckiff, Benjamin J / Simon, Hayley / Pelosi, Emanuela / Seumois, Grégory / Ay, Ferhat / Vijayanand, Pandurangan / Ottensmeier, Christian H

    bioRxiv : the preprint server for biology

    2020  

    Abstract: The molecular properties of ... ...

    Abstract The molecular properties of CD8
    Keywords covid19
    Language English
    Publishing date 2020-07-10
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2020.07.09.194027
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  6. Article ; Online: Single-Cell Transcriptomic Analysis of SARS-CoV-2 Reactive CD4

    Meckiff, Benjamin J / Ramírez-Suástegui, Ciro / Fajardo, Vicente / Chee, Serena J / Kusnadi, Anthony / Simon, Hayley / Grifoni, Alba / Pelosi, Emanuela / Weiskopf, Daniela / Sette, Alessandro / Ay, Ferhat / Seumois, Grégory / Ottensmeier, Christian H / Vijayanand, Pandurangan

    SSRN

    2020  , Page(s) 3641939

    Abstract: The contribution of CD4+ T cells to protective or pathogenic immune responses to SARS-CoV-2 infection remains unknown. Here, we present large-scale single-cell transcriptomic analysis of viral antigen-reactive CD4+ T cells from 32 COVID-19 patients. In ... ...

    Abstract The contribution of CD4+ T cells to protective or pathogenic immune responses to SARS-CoV-2 infection remains unknown. Here, we present large-scale single-cell transcriptomic analysis of viral antigen-reactive CD4+ T cells from 32 COVID-19 patients. In patients with severe disease compared to mild disease, we found increased proportions of cytotoxic follicular helper (T
    Keywords covid19
    Language English
    Publishing date 2020-07-07
    Publishing country United States
    Document type Preprint
    ISSN 1556-5068
    ISSN (online) 1556-5068
    DOI 10.2139/ssrn.3641939
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  7. Article ; Online: Imbalance of Regulatory and Cytotoxic SARS-CoV-2-Reactive CD4

    Meckiff, Benjamin J / Ramírez-Suástegui, Ciro / Fajardo, Vicente / Chee, Serena J / Kusnadi, Anthony / Simon, Hayley / Eschweiler, Simon / Grifoni, Alba / Pelosi, Emanuela / Weiskopf, Daniela / Sette, Alessandro / Ay, Ferhat / Seumois, Grégory / Ottensmeier, Christian H / Vijayanand, Pandurangan

    Cell

    2020  Volume 183, Issue 5, Page(s) 1340–1353.e16

    Abstract: The contribution of ... ...

    Abstract The contribution of CD4
    MeSH term(s) Adult ; Aged ; Aged, 80 and over ; Antibodies, Viral/blood ; Antibodies, Viral/immunology ; CD4 Lymphocyte Count ; COVID-19/epidemiology ; COVID-19/immunology ; COVID-19/virology ; Cohort Studies ; England/epidemiology ; Female ; Humans ; Male ; Middle Aged ; Reverse Transcriptase Polymerase Chain Reaction ; SARS-CoV-2/genetics ; Severity of Illness Index ; Single-Cell Analysis/methods ; Spike Glycoprotein, Coronavirus/immunology ; T Follicular Helper Cells/immunology ; T-Lymphocytes, Cytotoxic/immunology ; T-Lymphocytes, Regulatory/immunology ; Transcriptome
    Chemical Substances Antibodies, Viral ; Spike Glycoprotein, Coronavirus ; spike protein, SARS-CoV-2
    Keywords covid19
    Language English
    Publishing date 2020-10-05
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 187009-9
    ISSN 1097-4172 ; 0092-8674
    ISSN (online) 1097-4172
    ISSN 0092-8674
    DOI 10.1016/j.cell.2020.10.001
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  8. Article ; Online: The Cytokine TNF Promotes Transcription Factor SREBP Activity and Binding to Inflammatory Genes to Activate Macrophages and Limit Tissue Repair.

    Kusnadi, Anthony / Park, Sung Ho / Yuan, Ruoxi / Pannellini, Tania / Giannopoulou, Eugenia / Oliver, David / Lu, Theresa / Park-Min, Kyung-Hyun / Ivashkiv, Lionel B

    Immunity

    2019  Volume 51, Issue 2, Page(s) 241–257.e9

    Abstract: Cytokine tumor necrosis factor (TNF)-mediated macrophage polarization is important for inflammatory disease pathogenesis, but the mechanisms regulating polarization are not clear. We performed transcriptomic and epigenomic analysis of the TNF response in ...

    Abstract Cytokine tumor necrosis factor (TNF)-mediated macrophage polarization is important for inflammatory disease pathogenesis, but the mechanisms regulating polarization are not clear. We performed transcriptomic and epigenomic analysis of the TNF response in primary human macrophages and revealed late-phase activation of SREBP2, the master regulator of cholesterol biosynthesis genes. TNF stimulation extended the genomic profile of SREBP2 occupancy to include binding to and activation of inflammatory and interferon response genes independently of its functions in sterol metabolism. Genetic ablation of SREBP function shifted the balance of macrophage polarization from an inflammatory to a reparative phenotype in peritonitis and skin wound healing models. Genetic ablation of SREBP activity in myeloid cells or topical pharmacological inhibition of SREBP improved skin wound healing under homeostatic and chronic inflammatory conditions. Our results identify a function and mechanism of action for SREBPs in augmenting TNF-induced macrophage activation and inflammation and open therapeutic avenues for promoting wound repair.
    MeSH term(s) Animals ; Cell Differentiation ; Cells, Cultured ; Disease Models, Animal ; Epigenomics ; Female ; Humans ; Inflammation/metabolism ; Macrophage Activation ; Macrophages/immunology ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; Peritonitis/metabolism ; Phenotype ; RNA, Small Interfering/genetics ; Receptors, G-Protein-Coupled/genetics ; Receptors, G-Protein-Coupled/metabolism ; Skin Diseases/metabolism ; Transcriptome ; Tumor Necrosis Factor-alpha/metabolism ; Wound Healing
    Chemical Substances RNA, Small Interfering ; Receptors, G-Protein-Coupled ; SREB2 protein, mouse ; Tumor Necrosis Factor-alpha
    Language English
    Publishing date 2019-07-11
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 1217235-2
    ISSN 1097-4180 ; 1074-7613
    ISSN (online) 1097-4180
    ISSN 1074-7613
    DOI 10.1016/j.immuni.2019.06.005
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  9. Article ; Online: Opposing regulation of the late phase TNF response by mTORC1-IL-10 signaling and hypoxia in human macrophages.

    Huynh, Linda / Kusnadi, Anthony / Park, Sung Ho / Murata, Koichi / Park-Min, Kyung-Hyun / Ivashkiv, Lionel B

    Scientific reports

    2016  Volume 6, Page(s) 31959

    Abstract: Tumor necrosis factor (TNF) is best known for inducing a rapid but transient NF-κB-mediated inflammatory response. We investigated later phases of TNF signaling, after the initial transient induction of inflammatory genes has subsided, in primary human ... ...

    Abstract Tumor necrosis factor (TNF) is best known for inducing a rapid but transient NF-κB-mediated inflammatory response. We investigated later phases of TNF signaling, after the initial transient induction of inflammatory genes has subsided, in primary human macrophages. TNF signaling induced expression of late response genes, including inhibitors of NF-κB and TLR signaling, with delayed and sustained kinetics 6-24 hr after TNF stimulation. A subset of late phase genes was expressed in rheumatoid arthritis synovial macrophages, confirming their expression under chronic inflammatory conditions in vivo. Expression of a subset of late phase genes was mediated by autocrine IL-10, which activated STAT3 with delayed kinetics. Hypoxia, which occurs at sites of infection or inflammation where TNF is expressed, suppressed this IL-10-STAT3 autocrine loop and expression of late phase genes. TNF-induced expression of IL-10 and downstream genes was also dependent on signaling by mTORC1, which senses the metabolic state of cells and is modulated by hypoxia. These results reveal an mTORC1-dependent IL-10-mediated late phase response to TNF by primary human macrophages, and identify suppression of IL-10 responses as a new mechanism by which hypoxia can promote inflammation. Thus, hypoxic and metabolic pathways may modulate TNF responses during chronic inflammation.
    Language English
    Publishing date 2016-08-25
    Publishing country England
    Document type Journal Article
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/srep31959
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  10. Article ; Online: Single-Cell Transcriptomic Analysis of SARS-CoV-2 Reactive CD4 + T Cells

    Meckiff, Benjamin J. / Ramírez-Suástegui, Ciro / Fajardo, Vicente / Chee, Serena J. / Kusnadi, Anthony / Simon, Hayley / Grifoni, Alba / Pelosi, Emanuela / Weiskopf, Daniela / Sette, Alessandro / Ay, Ferhat / Seumois, Grégory / Ottensmeier, Christian / Vijayanand, Pandurangan

    SSRN Electronic Journal ; ISSN 1556-5068

    2020  

    Keywords covid19
    Language English
    Publisher Elsevier BV
    Publishing country us
    Document type Article ; Online
    DOI 10.2139/ssrn.3641939
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

    More links

    Kategorien

To top