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  1. Article ; Online: Long-read DNA sequencing leads to the more complete sequence characterization of the fruit size reducing region flanking a Fusarium wilt resistance gene.

    Lee, Tong Geon

    Molecular horticulture

    2022  Volume 2, Issue 1, Page(s) 16

    Language English
    Publishing date 2022-07-02
    Publishing country England
    Document type Letter
    ISSN 2730-9401
    ISSN (online) 2730-9401
    DOI 10.1186/s43897-022-00037-w
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: The complete mitochondrial genome of a marine polychaete,

    Lee, Geon Hyeok / Min, Gi-Sik

    Mitochondrial DNA. Part B, Resources

    2023  Volume 8, Issue 9, Page(s) 985–988

    Abstract: ... ...

    Abstract Prionospio
    Language English
    Publishing date 2023-09-21
    Publishing country England
    Document type Journal Article
    ISSN 2380-2359
    ISSN (online) 2380-2359
    DOI 10.1080/23802359.2023.2241696
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Using machine learning and partial dependence to evaluate robustness of best linear unbiased prediction (BLUP) for phenotypic values.

    Bhandari, Prashant / Lee, Tong Geon

    Journal of applied genetics

    2024  Volume 65, Issue 2, Page(s) 283–286

    Abstract: Best linear unbiased prediction (BLUP) is widely used in plant research to address experimental variation. For phenotypic values, BLUP accuracy is largely dependent on properly controlled experimental repetition and how variable components are outlined ... ...

    Abstract Best linear unbiased prediction (BLUP) is widely used in plant research to address experimental variation. For phenotypic values, BLUP accuracy is largely dependent on properly controlled experimental repetition and how variable components are outlined in the model. Thus, determining BLUP robustness implies the need to evaluate contributions from each repetition. Here, we assessed the robustness of BLUP values for simulated or empirical phenotypic datasets, where the BLUP value and each experimental repetition served as dependent and independent (feature) variables, respectively. Our technique incorporated machine learning and partial dependence. First, we compared the feature importance estimated with the neural networks. Second, we compared estimated average marginal effects of individual repetitions, calculated with a partial dependence analysis. We showed that contributions of experimental repetitions are unequal in a phenotypic dataset, suggesting that the calculated BLUP value is likely to be influenced by some repetitions more than others (such as failing to detect simulated true positive associations). To resolve disproportionate sources, variable components in the BLUP model must be further outlined.
    MeSH term(s) Genotype ; Linear Models ; Machine Learning ; Models, Genetic ; Phenotype
    Language English
    Publishing date 2024-01-03
    Publishing country England
    Document type Journal Article
    ZDB-ID 1235302-4
    ISSN 2190-3883 ; 1234-1983
    ISSN (online) 2190-3883
    ISSN 1234-1983
    DOI 10.1007/s13353-023-00815-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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    In stock of ZB MED Bonn / Germany

    Einzelsign.: Show issues

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  4. Article ; Online: Cluster-Based Pairwise Contrastive Loss for Noise-Robust Speech Recognition.

    Lee, Geon Woo / Kim, Hong Kook

    Sensors (Basel, Switzerland)

    2024  Volume 24, Issue 8

    Abstract: This paper addresses a joint training approach applied to a pipeline comprising speech enhancement (SE) and automatic speech recognition (ASR) models, where an acoustic tokenizer is included in the pipeline to leverage the linguistic information from the ...

    Abstract This paper addresses a joint training approach applied to a pipeline comprising speech enhancement (SE) and automatic speech recognition (ASR) models, where an acoustic tokenizer is included in the pipeline to leverage the linguistic information from the ASR model to the SE model. The acoustic tokenizer takes the outputs of the ASR encoder and provides a pseudo-label through K-means clustering. To transfer the linguistic information, represented by pseudo-labels, from the acoustic tokenizer to the SE model, a cluster-based pairwise contrastive (CBPC) loss function is proposed, which is a self-supervised contrastive loss function, and combined with an information noise contrastive estimation (infoNCE) loss function. This combined loss function prevents the SE model from overfitting to outlier samples and represents the pronunciation variability in samples with the same pseudo-label. The effectiveness of the proposed CBPC loss function is evaluated on a noisy LibriSpeech dataset by measuring both the speech quality scores and the word error rate (WER). The experimental results reveal that the proposed joint training approach using the described CBPC loss function achieves a lower WER than the conventional joint training approaches. In addition, it is demonstrated that the speech quality scores of the SE model trained using the proposed training approach are higher than those of the standalone-SE model and SE models trained using conventional joint training approaches. An ablation study is also conducted to investigate the effects of different combinations of loss functions on the speech quality scores and WER. Here, it is revealed that the proposed CBPC loss function combined with infoNCE contributes to a reduced WER and an increase in most of the speech quality scores.
    MeSH term(s) Humans ; Speech Recognition Software ; Noise ; Cluster Analysis ; Algorithms ; Speech/physiology
    Language English
    Publishing date 2024-04-17
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2052857-7
    ISSN 1424-8220 ; 1424-8220
    ISSN (online) 1424-8220
    ISSN 1424-8220
    DOI 10.3390/s24082573
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Effects of Language Differences on Inpatient Fall Detection Using Deep Learning.

    Cho, Insook / Lee, EunJu / Lee, Dong-Geon

    Studies in health technology and informatics

    2024  Volume 310, Page(s) 1584–1585

    Abstract: This study examined the effects of language differences between Korean and English on the performance of natural language processing in the classification task of identifying inpatient falls from unstructured nursing notes. ...

    Abstract This study examined the effects of language differences between Korean and English on the performance of natural language processing in the classification task of identifying inpatient falls from unstructured nursing notes.
    MeSH term(s) Humans ; Deep Learning ; Accidental Falls/prevention & control ; Inpatients ; Electronic Health Records ; Language ; Natural Language Processing
    Language English
    Publishing date 2024-03-01
    Publishing country Netherlands
    Document type Journal Article
    ISSN 1879-8365
    ISSN (online) 1879-8365
    DOI 10.3233/SHTI231329
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: 

    Lee, Geon Hyeok / Min, Gi-Sik

    ZooKeys

    2022  Volume 1100, Page(s) 191–205

    Abstract: A new spionid polychaete, ...

    Abstract A new spionid polychaete,
    Language English
    Publishing date 2022-05-16
    Publishing country Bulgaria
    Document type Journal Article
    ZDB-ID 2445640-8
    ISSN 1313-2970 ; 1313-2989
    ISSN (online) 1313-2970
    ISSN 1313-2989
    DOI 10.3897/zookeys.1100.80077
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Actinidia arguta

    Lee, Jangho / Park, Joon / Song, Kyung-Mo / Lee, Yu Geon / Choi, Hyo-Kyoung

    Journal of medicinal food

    2024  

    Abstract: The primary inflammatory process in atherosclerosis, a major contributor to cardiovascular disease, begins with monocyte adhering to vascular endothelial cells. ...

    Abstract The primary inflammatory process in atherosclerosis, a major contributor to cardiovascular disease, begins with monocyte adhering to vascular endothelial cells.
    Language English
    Publishing date 2024-04-24
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1427365-2
    ISSN 1557-7600 ; 1096-620X
    ISSN (online) 1557-7600
    ISSN 1096-620X
    DOI 10.1089/jmf.2023.K.0326
    Database MEDical Literature Analysis and Retrieval System OnLINE

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    In stock of ZB MED Cologne/Königswinter

    Zs.A 5916: Show issues Location:
    Je nach Verfügbarkeit (siehe Angabe bei Bestand)
    bis Jg. 1994: Bestellungen von Artikeln über das Online-Bestellformular
    Jg. 1995 - 2021: Lesesall (2.OG)
    ab Jg. 2022: Lesesaal (EG)

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  8. Article: A New Polychaete,

    Lee, Geon Hyeok / Min, Gi-Sik

    Zoological science

    2022  Volume 39, Issue 5, Page(s) 500–506

    Abstract: A new spionid polychaete, ...

    Abstract A new spionid polychaete,
    MeSH term(s) Animals ; Annelida/genetics ; DNA, Ribosomal ; Electron Transport Complex IV/genetics ; Polychaeta/genetics ; Republic of Korea
    Chemical Substances DNA, Ribosomal ; Electron Transport Complex IV (EC 1.9.3.1)
    Language English
    Publishing date 2022-11-01
    Publishing country Japan
    Document type Journal Article
    ZDB-ID 2038883-4
    ISSN 2212-3830 ; 0289-0003
    ISSN (online) 2212-3830
    ISSN 0289-0003
    DOI 10.2108/zs220031
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  9. Article: Molecular Detection of Phytoplasmas of the 16SrⅠ and 16SrXXXⅡ Groups in Elaeocarpus sylvestris Trees with Decline Disease in Jeju Island, South Korea.

    Lee, Geon-Woo / Han, Sang-Sub

    The plant pathology journal

    2023  Volume 39, Issue 1, Page(s) 149–157

    Abstract: Phytoplasmas were discovered in diseased Elaeocarpus sylvestris trees growing on Jeju Island that showed symptoms of yellowing and darkening in the leaves. Leaf samples from 14 symptomatic plants in Jeju-si and Seogwipo-si were collected and phytoplasma ... ...

    Abstract Phytoplasmas were discovered in diseased Elaeocarpus sylvestris trees growing on Jeju Island that showed symptoms of yellowing and darkening in the leaves. Leaf samples from 14 symptomatic plants in Jeju-si and Seogwipo-si were collected and phytoplasma 16S rRNA was successfully amplified by nested polymerase chain reaction using universal primers. The sequence analysis detected two phytoplasmas, which showed 99.5% identity to 'Candidatus Phytoplasma asteris' and 'Ca. P. malaysianum' affiliated to 16SrI and 16SrXXXII groups, respectively. Through polymerase chain reaction-restriction fragment length polymorphism (RFLP) analyses using the AfaI (RsaI) restriction enzyme, the presence of two phytoplasmas strains as well as cases of mixed infection of these strains was detected. In a virtual RFLP analysis with 17 restriction enzymes, the 16S rRNA sequence of the 'Ca. P. asteris' strain was found to match the pattern of the 16SrI-B subgroup. In addition, the phytoplasmas in the mixed-infection cases could be distinguished using specific primer sets. In conclusion, this study confirmed mixed infection of two phytoplasmas in one E. sylvestris plant, and also the presence of two phytoplasmas (of the 16SrⅠ and 16SrXXXⅡ groups) in Jeju Island (Republic of Korea).
    Language English
    Publishing date 2023-02-01
    Publishing country Korea (South)
    Document type Journal Article
    ZDB-ID 2529195-6
    ISSN 2093-9280 ; 1598-2254 ; 0256-8608
    ISSN (online) 2093-9280
    ISSN 1598-2254 ; 0256-8608
    DOI 10.5423/PPJ.OA.07.2022.0091
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Congestive ischemic colitis successfully treated with anti-inflammatory therapy: A case report.

    Lee, Geon Woo / Park, Su Bum

    World journal of clinical cases

    2023  Volume 12, Issue 1, Page(s) 142–147

    Abstract: Background: Congestive ischemic colitis is a rare subtype of ischemic colitis with an unknown pathophysiology. Excluding conservative management, such as fasting, no established treatment exists; therefore, surgical intervention should be considered in ... ...

    Abstract Background: Congestive ischemic colitis is a rare subtype of ischemic colitis with an unknown pathophysiology. Excluding conservative management, such as fasting, no established treatment exists; therefore, surgical intervention should be considered in some cases if symptoms worsen. Current literature suggests that anti-inflammatory agents may effectively treat congestive ischemic colitis.
    Case summary: We present the case of a 68-year-old female patient who underwent laparoscopic left hemicolectomy for transverse colon cancer 3 years ago. Postoperatively, follow-up included an annual colonoscopy and abdominal computed tomography (CT) at a local clinic. However, progressive erythema and edema of the sigmoid colon were observed 1 year postoperatively. Upon admission to our hospital, she complained of abdominal pain and diarrhea. Abdominal CT showed thickening of the sigmoid colon walls, and colonoscopy revealed erythema, edema, and multiple ulcers with exudate in the sigmoid colon. CT angiography showed engorgement of the sigmoid vasa recta without any vascular abnormalities. The diagnosis was congestive ischemic colitis, and we treated the patient with anti-inflammatory agents. After 2 mo of glucocorticoid therapy (20 mg once daily) and 7 mo of 5-aminosalicylate therapy (1 g twice daily), the ulcers completely healed. She has not experienced any recurrence for 2 years.
    Conclusion: Anti-inflammatory therapy, specifically glucocorticoids and 5-aminosalicylate, has demonstrated promising efficacy and introduces potential novel treatment options for congestive ischemic colitis.
    Language English
    Publishing date 2023-11-17
    Publishing country United States
    Document type Case Reports
    ISSN 2307-8960
    ISSN 2307-8960
    DOI 10.12998/wjcc.v12.i1.142
    Database MEDical Literature Analysis and Retrieval System OnLINE

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