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  1. Article: Establishing Population Values for Chlorine Exposure in the United States (2015-2016) Using 2 Chlorine Biomarkers, 3-Chlorotyrosine and 3,5-Dichlorotyrosine.

    Boles, Stephanie L / Pantazides, Brooke G / Perez, Jonas W / Sternberg, Maya R / Crow, Brian S / Blake, Thomas A

    The journal of applied laboratory medicine

    2024  Volume 9, Issue 2, Page(s) 342–349

    Abstract: Background: In the United States, 12 million short tons of chlorine are manufactured and transported each year. Due to the volume of this volatile chemical, large- and small-scale chemical exposures occur frequently. To diagnose and treat potentially ... ...

    Abstract Background: In the United States, 12 million short tons of chlorine are manufactured and transported each year. Due to the volume of this volatile chemical, large- and small-scale chemical exposures occur frequently. To diagnose and treat potentially exposed individuals, reference range values for confirmatory biomarkers are required to differentiate between normal and abnormal exposure levels.
    Methods: Serum surplus samples (n = 1780) from the National Health and Nutrition Examination Survey (NHANES) 2015-2016 were measured for 2 chlorine biomarkers, 3-chlorotyrosine (Cl-Tyr) and 3,5-dichlorotyrosine (Cl2-Tyr), by liquid chromatography coupled to a triple quadrupole mass spectrometer. We evaluated demographic factors associated with elevated biomarker levels.
    Results: Participant samples were analyzed for the chlorine biomarkers Cl-Tyr and Cl2-Tyr. In the unweighted analysis of these samples, 1349 (75.8%) were under the limit of detection (< LOD) of 2.50 ng/mL for Cl-Tyr and 1773 (99.6%) were < LOD for Cl2-Tyr. Samples within the method reportable range were 2.50 to 35.6 ng/mL for Cl-Tyr and 2.69 to 11.2 ng/mL for Cl2-Tyr. Since only 7 of the 1780 participants had detectable Cl2-Tyr, statistical analysis was limited to Cl-Tyr. Of the demographic characteristics examined, age, body mass index (BMI), estimated glomerular filtration rate (eGFR), and sex exhibited statistically significant differences in the weighted prevalence of detectable Cl-Tyr.
    Conclusions: This is the first reported set of Cl-Tyr and Cl2-Tyr population values for the United States. This population range coupled with NHANES demographic information could help healthcare professionals distinguish between normal and abnormal chlorine biomarker levels in an emergency. With this information, an inference could be made when determining acute chlorine exposure in individuals.
    MeSH term(s) Humans ; United States/epidemiology ; Chlorine ; Nutrition Surveys ; Biomarkers ; Chlorides ; Tyrosine/analogs & derivatives
    Chemical Substances Chlorine (4R7X1O2820) ; 3,5-dichlorotyrosine (N303G0Z9AR) ; 3-chlorotyrosine (SY44C9MINA) ; Biomarkers ; Chlorides ; Tyrosine (42HK56048U)
    Language English
    Publishing date 2024-02-02
    Publishing country England
    Document type Journal Article ; Research Support, U.S. Gov't, P.H.S. ; Research Support, Non-U.S. Gov't
    ISSN 2576-9456
    ISSN 2576-9456
    DOI 10.1093/jalm/jfad114
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Recapitulation of human pathophysiology and identification of forensic biomarkers in a translational model of chlorine inhalation injury.

    Achanta, Satyanarayana / Gentile, Michael A / Albert, Carolyn J / Schulte, Kevin A / Pantazides, Brooke G / Crow, Brian S / Quiñones-González, Jennifer / Perez, Jonas W / Ford, David A / Patel, Rakesh P / Blake, Thomas A / Gunn, Michael D / Jordt, Sven E

    American journal of physiology. Lung cellular and molecular physiology

    2024  Volume 326, Issue 4, Page(s) L482–L495

    Abstract: Chlorine gas ( ... ...

    Abstract Chlorine gas (Cl
    MeSH term(s) Humans ; Animals ; Swine ; Chlorine/toxicity ; Chlorine/metabolism ; Lung/metabolism ; Bronchoalveolar Lavage Fluid ; Acute Lung Injury/chemically induced ; Acute Lung Injury/pathology ; Biomarkers/metabolism ; Fatty Acids/metabolism
    Chemical Substances Chlorine (4R7X1O2820) ; Biomarkers ; Fatty Acids
    Language English
    Publishing date 2024-02-06
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1013184-x
    ISSN 1522-1504 ; 1040-0605
    ISSN (online) 1522-1504
    ISSN 1040-0605
    DOI 10.1152/ajplung.00162.2023
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: CloudReg: automatic terabyte-scale cross-modal brain volume registration.

    Chandrashekhar, Vikram / Tward, Daniel J / Crowley, Devin / Crow, Ailey K / Wright, Matthew A / Hsueh, Brian Y / Gore, Felicity / Machado, Timothy A / Branch, Audrey / Rosenblum, Jared S / Deisseroth, Karl / Vogelstein, Joshua T

    Nature methods

    2021  Volume 18, Issue 8, Page(s) 845–846

    MeSH term(s) Animals ; Brain/anatomy & histology ; Brain/physiology ; Brain Mapping/methods ; Computer Simulation ; Humans ; Image Processing, Computer-Assisted/methods ; Magnetic Resonance Imaging/methods ; Software
    Language English
    Publishing date 2021-07-10
    Publishing country United States
    Document type Letter ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 2169522-2
    ISSN 1548-7105 ; 1548-7091
    ISSN (online) 1548-7105
    ISSN 1548-7091
    DOI 10.1038/s41592-021-01218-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Ammonium-adduct chemical ionization to investigate anthropogenic oxygenated gas-phase organic compounds in urban air.

    Khare, Peeyush / Krechmer, Jordan E / Machesky, Jo Ellen / Hass-Mitchell, Tori / Cao, Cong / Wang, Junqi / Majluf, Francesca / Lopez-Hilfiker, Felipe / Malek, Sonja / Wang, Will / Seltzer, Karl / Pye, Havala O T / Commane, Roisin / McDonald, Brian C / Toledo-Crow, Ricardo / Mak, John E / Gentner, Drew R

    Atmospheric chemistry and physics

    2022  Volume 22, Issue 21, Page(s) 14377–14399

    Abstract: ... we present online measurements of oxygenated organic compounds in a U.S. megacity over a 10-day wintertime ...

    Abstract Volatile chemical products (VCPs) and other non-combustion-related sources have become important for urban air quality, and bottom-up calculations report emissions of a variety of functionalized compounds that remain understudied and uncertain in emissions estimates. Using a new instrumental configuration, we present online measurements of oxygenated organic compounds in a U.S. megacity over a 10-day wintertime sampling period, when biogenic sources and photochemistry were less active. Measurements were conducted at a rooftop observatory in upper Manhattan, New York City, USA using a Vocus chemical ionization time-of-flight mass spectrometer with ammonium (NH
    Language English
    Publishing date 2022-12-12
    Publishing country Germany
    Document type Journal Article
    ISSN 1680-7316
    ISSN 1680-7316
    DOI 10.5194/acp-22-14377-2022
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Development of a clinical assay to measure chlorinated tyrosine in hair and tissue samples using a mouse chlorine inhalation exposure model.

    Pantazides, Brooke G / Crow, Brian S / Quiñones-González, Jennifer / Perez, Jonas W / Harvilchuck, Jill A / Wallery, Jeffrey J / Hu, Tom C / Thomas, Jerry D / Johnson, Rudolph C / Blake, Thomas A

    Analytical and bioanalytical chemistry

    2021  Volume 413, Issue 6, Page(s) 1765–1776

    Abstract: Chlorine is a toxic industrial chemical with a history of use as a chemical weapon. Chlorine is also produced, stored, and transported in bulk making it a high-priority pulmonary threat in the USA. Due to the high reactivity of chlorine, few biomarkers ... ...

    Abstract Chlorine is a toxic industrial chemical with a history of use as a chemical weapon. Chlorine is also produced, stored, and transported in bulk making it a high-priority pulmonary threat in the USA. Due to the high reactivity of chlorine, few biomarkers exist to identify exposure in clinical and environmental samples. Our laboratory evaluates acute chlorine exposure in clinical samples by measuring 3-chlorotyrosine (Cl-Tyr) and 3,5-dichlorotyrosine (Cl
    MeSH term(s) Animals ; Biomarkers/metabolism ; Bronchoalveolar Lavage Fluid ; Calibration ; Chlorine/chemistry ; Chromatography ; Disease Models, Animal ; Hair/metabolism ; Inhalation Exposure ; Lung ; Male ; Mice ; Mice, Inbred C57BL ; Plasma/chemistry ; Quality Control ; Tandem Mass Spectrometry/methods ; Time Factors ; Tyrosine/analogs & derivatives ; Tyrosine/analysis
    Chemical Substances Biomarkers ; Tyrosine (42HK56048U) ; Chlorine (4R7X1O2820) ; 3,5-dichlorotyrosine (N303G0Z9AR) ; 3-chlorotyrosine (SY44C9MINA)
    Language English
    Publishing date 2021-01-28
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 201093-8
    ISSN 1618-2650 ; 0016-1152 ; 0372-7920
    ISSN (online) 1618-2650
    ISSN 0016-1152 ; 0372-7920
    DOI 10.1007/s00216-020-03146-x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: A quantitative method to detect human exposure to sulfur and nitrogen mustards via protein adducts.

    Pantazides, Brooke G / Quiñones-González, Jennifer / Rivera Nazario, Danisha M / Crow, Brian S / Perez, Jonas W / Blake, Thomas A / Johnson, Rudolph C

    Journal of chromatography. B, Analytical technologies in the biomedical and life sciences

    2019  Volume 1121, Page(s) 9–17

    Abstract: Sulfur and nitrogen mustards are internationally banned vesicants listed as Schedule 1 chemical agents in the Chemical Weapons Convention. These compounds are highly reactive electrophiles that form stable adducts to a variety of available amino acid ... ...

    Abstract Sulfur and nitrogen mustards are internationally banned vesicants listed as Schedule 1 chemical agents in the Chemical Weapons Convention. These compounds are highly reactive electrophiles that form stable adducts to a variety of available amino acid residues on proteins upon exposure. We present a quantitative exposure assay that simultaneously measures agent specific protein adducts to cysteine for sulfur mustard (HD) and three nitrogen mustards (HN1, HN2, and HN3). Proteinase K was added to a serum or plasma sample to digest protein adducts and form the target analyte, the blister agent bound to the tripeptide cysteine-proline-phenylalanine (CPF). The mustard adducted-tripeptide was purified by solid phase extraction and analyzed using isotope dilution LC-MS/MS. Product ion structures were identified using high-resolution product ion scan data for HD-CPF, HN1-CPF, HN2-CPF, and HN3-CPF. Thorough matrix comparison, analyte recovery, ruggedness, and stability studies were incorporated during method validation to produce a robust method. The method demonstrated long term-stability, precision (RSD < 15%), and intra- and inter-day accuracies > 85% across the reportable range of 3.00-200 ng/mL for each analyte. Compared to previously published assays, this method quantitates both sulfur and nitrogen mustard exposure biomarkers, requires only 10 μL of sample volume, and can use either a liquid sample or dried sample spot.
    MeSH term(s) Biomarkers/blood ; Biomarkers/chemistry ; Chromatography, High Pressure Liquid ; Cysteine/blood ; Cysteine/chemistry ; Environmental Exposure/analysis ; Humans ; Mustard Compounds/blood ; Mustard Compounds/chemistry ; Reproducibility of Results ; Serum Albumin/analysis ; Serum Albumin/chemistry ; Tandem Mass Spectrometry
    Chemical Substances Biomarkers ; Mustard Compounds ; Serum Albumin ; Cysteine (K848JZ4886)
    Language English
    Publishing date 2019-05-05
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 1180823-8
    ISSN 1873-376X ; 0378-4347 ; 1570-0232 ; 1387-2273
    ISSN (online) 1873-376X
    ISSN 0378-4347 ; 1570-0232 ; 1387-2273
    DOI 10.1016/j.jchromb.2019.05.005
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Elevated serum IgA following vaccination against SARS-CoV-2 in a cohort of high-risk first responders.

    Montague, Brian T / Wipperman, Matthew F / Chio, Erica / Crow, Rowena / Hooper, Andrea T / O'Brien, Meagan P / Simões, Eric A F

    Scientific reports

    2022  Volume 12, Issue 1, Page(s) 14932

    Abstract: ... anti-S) IgG, anti-nucleocapsid (anti-N) IgG and anti-S IgA response following vaccination against SARS ... positive for anti-S IgG and 96% were positive for anti-S IgA. Nine percent were positive for anti-N IgG ... were positive for anti-S IgA as compared to 91% of those who received the Pfizer vaccine (p = 0.0009 ...

    Abstract IgA plays an important early neutralizing role after SARS-CoV-2 infection. Systemically administered vaccines typically produce an IgM/IgG predominant response. We evaluated the serum anti-spike (anti-S) IgG, anti-nucleocapsid (anti-N) IgG and anti-S IgA response following vaccination against SARS-CoV-2 in a cohort of first-responders. Among the 378 completely vaccinated participants, 98% were positive for anti-S IgG and 96% were positive for anti-S IgA. Nine percent were positive for anti-N IgG suggesting prior exposure to SARS-CoV-2. No statistically significant difference was seen in IgA response based on prior evidence infection (p = 0.18). Ninety-eight of those receiving the Moderna vaccine (98%) were positive for anti-S IgA as compared to 91% of those who received the Pfizer vaccine (p = 0.0009). The high proportion of participants observed to have a positive anti-S IgA response after vaccination suggests that the vaccines elicit a systemic response characterized by elevated levels of both IgG and IgA.
    MeSH term(s) Antibodies, Viral ; COVID-19/prevention & control ; Emergency Responders ; Humans ; Immunoglobulin A ; Immunoglobulin G ; SARS-CoV-2 ; Vaccination
    Chemical Substances Antibodies, Viral ; Immunoglobulin A ; Immunoglobulin G
    Language English
    Publishing date 2022-09-02
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-022-19095-7
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  8. Article: Extended Sentinel Monitoring of

    Dively, Galen P / Kuhar, Tom P / Taylor, Sally V / Doughty, Helene / Holmstrom, Kristian / Gilrein, Daniel O / Nault, Brian A / Ingerson-Mahar, Joseph / Huseth, Anders / Reisig, Dominic / Fleischer, Shelby / Owens, David / Tilmon, Kelley / Reay-Jones, Francis / Porter, Pat / Smith, Jocelyn / Saguez, Julien / Wells, Jason / Congdon, Caitlin /
    Byker, Holly / Jensen, Bryan / DiFonzo, Chris / Hutchison, William D / Burkness, Eric / Wright, Robert / Crossley, Michael / Darby, Heather / Bilbo, Tom / Seiter, Nicholas / Krupke, Christian / Abel, Craig / Coates, Brad S / McManus, Bradley / Fuller, Billy / Bradshaw, Jeffrey / Peterson, Julie A / Buntin, David / Paula-Moraes, Silvana / Kesheimer, Katelyn / Crow, Whitney / Gore, Jeffrey / Huang, Fangneng / Ludwick, Dalton C / Raudenbush, Amy / Jimenez, Sebastian / Carrière, Yves / Elkner, Timothy / Hamby, Kelly

    Insects

    2023  Volume 14, Issue 7

    Abstract: Transgenic corn and cotton that produce Cry and Vip3Aa toxins derived ... ...

    Abstract Transgenic corn and cotton that produce Cry and Vip3Aa toxins derived from
    Language English
    Publishing date 2023-06-25
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2662247-6
    ISSN 2075-4450
    ISSN 2075-4450
    DOI 10.3390/insects14070577
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  9. Article: Development of a clinical assay to measure chlorinated tyrosine in hair and tissue samples using a mouse chlorine inhalation exposure model

    Pantazides, Brooke G / Crow, Brian S / Quiñones-González, Jennifer / Perez, Jonas W / Harvilchuck, Jill A / Wallery, Jeffrey J / Hu, Tom C / Thomas, Jerry D / Johnson, Rudolph C / Blake, Thomas A

    Analytical and bioanalytical chemistry. 2021 Mar., v. 413, no. 6

    2021  

    Abstract: Chlorine is a toxic industrial chemical with a history of use as a chemical weapon. Chlorine is also produced, stored, and transported in bulk making it a high-priority pulmonary threat in the USA. Due to the high reactivity of chlorine, few biomarkers ... ...

    Abstract Chlorine is a toxic industrial chemical with a history of use as a chemical weapon. Chlorine is also produced, stored, and transported in bulk making it a high-priority pulmonary threat in the USA. Due to the high reactivity of chlorine, few biomarkers exist to identify exposure in clinical and environmental samples. Our laboratory evaluates acute chlorine exposure in clinical samples by measuring 3-chlorotyrosine (Cl-Tyr) and 3,5-dichlorotyrosine (Cl₂-Tyr) using liquid chromatography tandem mass spectrometry (LC-MS/MS). Individuals can have elevated biomarker levels due to their environment and chronic health conditions, but levels are significantly lower in individuals exposed to chlorine. Historically these biomarkers have been evaluated in serum, plasma, blood, and bronchoalveolar lavage (BAL) fluid. We report the expansion into hair and lung tissue samples using our newly developed tissue homogenization protocol which fits seamlessly with our current chlorinated tyrosine quantitative assay. Furthermore, we have updated the chlorinated tyrosine assay to improve throughput and ruggedness and reduce sample volume requirements. The improved assay was used to measure chlorinated tyrosine levels in 198 mice exposed to either chlorine gas or air. From this animal study, we compared Cl-Tyr and Cl₂-Tyr levels among three matrices (i.e., lung, hair, and blood) and found that hair had the most abundant chlorine exposure biomarkers. Furthermore, we captured the first timeline of each analyte in the lung, hair, and blood samples. In mice exposed to chlorine gas, both Cl-Tyr and Cl₂-Tyr were present in blood and lung samples up to 24 h and up to 30 days in hair samples.
    Keywords air ; analytical chemistry ; biomarkers ; blood serum ; chlorine ; exposure models ; homogenization ; inhalation exposure ; liquid chromatography ; lungs ; mice ; tandem mass spectrometry ; toxicity ; tyrosine
    Language English
    Dates of publication 2021-03
    Size p. 1765-1776.
    Publishing place Springer Berlin Heidelberg
    Document type Article
    Note NAL-AP-2-clean
    ISSN 1618-2642
    DOI 10.1007/s00216-020-03146-x
    Database NAL-Catalogue (AGRICOLA)

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  10. Article ; Online: Comparative transcriptomics reveals human-specific cortical features.

    Jorstad, Nikolas L / Song, Janet H T / Exposito-Alonso, David / Suresh, Hamsini / Castro-Pacheco, Nathan / Krienen, Fenna M / Yanny, Anna Marie / Close, Jennie / Gelfand, Emily / Long, Brian / Seeman, Stephanie C / Travaglini, Kyle J / Basu, Soumyadeep / Beaudin, Marc / Bertagnolli, Darren / Crow, Megan / Ding, Song-Lin / Eggermont, Jeroen / Glandon, Alexandra /
    Goldy, Jeff / Kiick, Katelyn / Kroes, Thomas / McMillen, Delissa / Pham, Trangthanh / Rimorin, Christine / Siletti, Kimberly / Somasundaram, Saroja / Tieu, Michael / Torkelson, Amy / Feng, Guoping / Hopkins, William D / Höllt, Thomas / Keene, C Dirk / Linnarsson, Sten / McCarroll, Steven A / Lelieveldt, Boudewijn P / Sherwood, Chet C / Smith, Kimberly / Walsh, Christopher A / Dobin, Alexander / Gillis, Jesse / Lein, Ed S / Hodge, Rebecca D / Bakken, Trygve E

    Science (New York, N.Y.)

    2023  Volume 382, Issue 6667, Page(s) eade9516

    Abstract: The cognitive abilities of humans are distinctive among primates, but their molecular and cellular substrates are poorly understood. We used comparative single-nucleus transcriptomics to analyze samples of the middle temporal gyrus (MTG) from adult ... ...

    Abstract The cognitive abilities of humans are distinctive among primates, but their molecular and cellular substrates are poorly understood. We used comparative single-nucleus transcriptomics to analyze samples of the middle temporal gyrus (MTG) from adult humans, chimpanzees, gorillas, rhesus macaques, and common marmosets to understand human-specific features of the neocortex. Human, chimpanzee, and gorilla MTG showed highly similar cell-type composition and laminar organization as well as a large shift in proportions of deep-layer intratelencephalic-projecting neurons compared with macaque and marmoset MTG. Microglia, astrocytes, and oligodendrocytes had more-divergent expression across species compared with neurons or oligodendrocyte precursor cells, and neuronal expression diverged more rapidly on the human lineage. Only a few hundred genes showed human-specific patterning, suggesting that relatively few cellular and molecular changes distinctively define adult human cortical structure.
    MeSH term(s) Animals ; Humans ; Gene Expression Profiling ; Gorilla gorilla/genetics ; Hominidae/genetics ; Hominidae/physiology ; Macaca mulatta/genetics ; Pan troglodytes/genetics ; Phylogeny ; Transcriptome ; Neocortex/physiology ; Species Specificity ; Temporal Lobe/physiology ; Cognition
    Language English
    Publishing date 2023-10-13
    Publishing country United States
    Document type Journal Article
    ZDB-ID 128410-1
    ISSN 1095-9203 ; 0036-8075
    ISSN (online) 1095-9203
    ISSN 0036-8075
    DOI 10.1126/science.ade9516
    Database MEDical Literature Analysis and Retrieval System OnLINE

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