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  1. Article ; Online: Using Longitudinal Twitter Data for Digital Epidemiology of Childhood Health Outcomes: An Annotated Data Set and Deep Neural Network Classifiers.

    Klein, Ari Z / Gutiérrez Gómez, José Agustín / Levine, Lisa D / Gonzalez-Hernandez, Graciela

    Journal of medical Internet research

    2024  Volume 26, Page(s) e50652

    Abstract: We manually annotated 9734 tweets that were posted by users who reported their pregnancy on Twitter, and used them to train, evaluate, and deploy deep neural network classifiers ( ... ...

    Abstract We manually annotated 9734 tweets that were posted by users who reported their pregnancy on Twitter, and used them to train, evaluate, and deploy deep neural network classifiers (F
    MeSH term(s) Child ; Female ; Pregnancy ; Humans ; Social Media ; Asthma/epidemiology ; Autism Spectrum Disorder ; Neural Networks, Computer
    Language English
    Publishing date 2024-03-25
    Publishing country Canada
    Document type Journal Article
    ZDB-ID 2028830-X
    ISSN 1438-8871 ; 1438-8871
    ISSN (online) 1438-8871
    ISSN 1438-8871
    DOI 10.2196/50652
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Dynamical Approach to the Jamming Problem.

    Wilken, Sam / Guo, Ashley Z / Levine, Dov / Chaikin, Paul M

    Physical review letters

    2023  Volume 131, Issue 23, Page(s) 238202

    Abstract: ... as random close packing (RCP) as BRO's densest critical point in dimension d=3. We conjecture that BRO ... likewise produces RCP in any dimension; if so, then RCP does not exist in d=1-2 (where BRO dynamics lead ... to crystalline order). In d=3-5, BRO produces isostatic configurations and previously estimated RCP volume ...

    Abstract A simple dynamical model, biased random organization (BRO), appears to produce configurations known as random close packing (RCP) as BRO's densest critical point in dimension d=3. We conjecture that BRO likewise produces RCP in any dimension; if so, then RCP does not exist in d=1-2 (where BRO dynamics lead to crystalline order). In d=3-5, BRO produces isostatic configurations and previously estimated RCP volume fractions 0.64, 0.46, and 0.30, respectively. For all investigated dimensions (d=2-5), we find that BRO belongs to the Manna universality class of dynamical phase transitions by measuring critical exponents associated with the steady-state activity and the long-range density fluctuations. Additionally, BRO's distribution of near contacts (gaps) displays behavior consistent with the infinite-dimensional theoretical treatment of RCP when d≥4. The association of BRO's densest critical configurations with random close packing implies that RCP's upper-critical dimension is consistent with the Manna class d_{uc}=4.
    Language English
    Publishing date 2023-12-22
    Publishing country United States
    Document type Journal Article
    ZDB-ID 208853-8
    ISSN 1079-7114 ; 0031-9007
    ISSN (online) 1079-7114
    ISSN 0031-9007
    DOI 10.1103/PhysRevLett.131.238202
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Face masking and COVID-19: potential effects of variolation on transmission dynamics.

    Levine, Zachary / Earn, David J D

    Journal of the Royal Society, Interface

    2022  Volume 19, Issue 190, Page(s) 20210781

    Abstract: Face masks do not completely prevent transmission of respiratory infections, but masked individuals are likely to inhale fewer infectious particles. If smaller infectious doses tend to yield milder infections, yet ultimately induce similar levels of ... ...

    Abstract Face masks do not completely prevent transmission of respiratory infections, but masked individuals are likely to inhale fewer infectious particles. If smaller infectious doses tend to yield milder infections, yet ultimately induce similar levels of immunity, then masking could reduce the prevalence of severe disease even if the total number of infections is unaffected. It has been suggested that this effect of masking is analogous to the pre-vaccination practice of variolation for smallpox, whereby susceptible individuals were intentionally infected with small doses of live virus (and often acquired immunity without severe disease). We present a simple epidemiological model in which mask-induced variolation causes milder infections, potentially with lower transmission rate and/or different duration. We derive relationships between the effectiveness of mask-induced variolation and important epidemiological metrics (the basic reproduction number and initial epidemic growth rate, and the peak prevalence, attack rate and equilibrium prevalence of severe infections). We illustrate our results using parameter estimates for the original SARS-CoV-2 wild-type virus, as well as the Alpha, Delta and Omicron variants. Our results suggest that if variolation is a genuine side-effect of masking, then the importance of face masks as a tool for reducing healthcare burdens from COVID-19 may be under-appreciated.
    MeSH term(s) COVID-19/epidemiology ; COVID-19/prevention & control ; Humans ; Masks ; SARS-CoV-2 ; Vaccination
    Language English
    Publishing date 2022-05-04
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2156283-0
    ISSN 1742-5662 ; 1742-5689
    ISSN (online) 1742-5662
    ISSN 1742-5689
    DOI 10.1098/rsif.2021.0781
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Orderly specification and precise laminar deployment of cortical glutamatergic projection neuron types through intermediate progenitors.

    Huilgol, Dhananjay / Levine, Jesse M / Galbavy, William / Wang, Bor-Shuen / Josh Huang, Z

    bioRxiv : the preprint server for biology

    2024  

    Abstract: The cerebral cortex comprises diverse types of glutamatergic projection neurons (PNs) generated from radial glial progenitors (RGs) through either direct neurogenesis or indirect neurogenesis (iNG) via intermediate progenitors (IPs). A foundational ... ...

    Abstract The cerebral cortex comprises diverse types of glutamatergic projection neurons (PNs) generated from radial glial progenitors (RGs) through either direct neurogenesis or indirect neurogenesis (iNG) via intermediate progenitors (IPs). A foundational concept in corticogenesis is the "inside-out" model whereby successive generations of PNs sequentially migrate to deep then progressively more superficial layers, but its biological significance remains unclear; and the role of iNG in this process is unknown. Using genetic strategies linking PN birth-dating to projection mapping in mice, we found that the laminar deployment of IP-derived PNs substantially deviate from an inside-out rule: PNs destined to non-consecutive layers are generated at the same time, and different PN types of the same layer are generated at non-contiguous times. The overarching scheme of iNG is the sequential specification and precise laminar deployment of projection-defined PN types, which may contribute to the orderly assembly of cortical output channels and processing streams.
    Highlights: - Each IP is fate-restricted to generate a pair of near-identical PNs - Corticogenesis involves the orderly generation of fate-restricted IP temporal cohorts - IP temporal cohorts sequentially as well as concurrently specify multiple PN types - The deployment of PN types to specific layers does not follow an inside-out order.
    Language English
    Publishing date 2024-03-02
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2024.03.01.582863
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Using Twitter Data for Cohort Studies of Drug Safety in Pregnancy: Proof-of-concept With β-Blockers.

    Klein, Ari Z / O'Connor, Karen / Levine, Lisa D / Gonzalez-Hernandez, Graciela

    JMIR formative research

    2022  Volume 6, Issue 6, Page(s) e36771

    Abstract: Background: Despite the fact that medication is taken during more than 90% of pregnancies, the fetal risk for most medications is unknown, and the majority of medications have no data regarding safety in pregnancy.: Objective: Using β-blockers as a ... ...

    Abstract Background: Despite the fact that medication is taken during more than 90% of pregnancies, the fetal risk for most medications is unknown, and the majority of medications have no data regarding safety in pregnancy.
    Objective: Using β-blockers as a proof-of-concept, the primary objective of this study was to assess the utility of Twitter data for a cohort study design-in particular, whether we could identify (1) Twitter users who have posted tweets reporting that they took medication during pregnancy and (2) their associated pregnancy outcomes.
    Methods: We searched for mentions of β-blockers in 2.75 billion tweets posted by 415,690 users who announced their pregnancy on Twitter. We manually reviewed the matching tweets to first determine if the user actually took the β-blocker mentioned in the tweet. Then, to help determine if the β-blocker was taken during pregnancy, we used the time stamp of the tweet reporting intake and drew upon an automated natural language processing (NLP) tool that estimates the date of the user's prenatal time period. For users who posted tweets indicating that they took or may have taken the β-blocker during pregnancy, we drew upon additional NLP tools to help identify tweets that report their pregnancy outcomes. Adverse pregnancy outcomes included miscarriage, stillbirth, birth defects, preterm birth (<37 weeks gestation), low birth weight (<5 pounds and 8 ounces at delivery), and neonatal intensive care unit (NICU) admission. Normal pregnancy outcomes included gestational age ≥37 weeks and birth weight ≥5 pounds and 8 ounces.
    Results: We retrieved 5114 tweets, posted by 2339 users, that mention a β-blocker, and manually identified 2332 (45.6%) tweets, posted by 1195 (51.1%) of the users, that self-report taking the β-blocker. We were able to estimate the date of the prenatal time period for 356 pregnancies among 334 (27.9%) of these 1195 users. Among these 356 pregnancies, we identified 257 (72.2%) during which the β-blocker was or may have been taken. We manually verified an adverse pregnancy outcome-preterm birth, NICU admission, low birth weight, birth defects, or miscarriage-for 38 (14.8%) of these 257 pregnancies. We manually verified a gestational age ≥37 weeks for 198 (90.4%) and a birth weight ≥5 pounds and 8 ounces for 50 (22.8%) of the 219 pregnancies for which we did not identify an adverse pregnancy outcome.
    Conclusions: Our ability to detect pregnancy outcomes for Twitter users who posted tweets reporting that they took or may have taken a β-blocker during pregnancy suggests that Twitter can be a complementary resource for cohort studies of drug safety in pregnancy.
    Language English
    Publishing date 2022-06-30
    Publishing country Canada
    Document type Journal Article
    ISSN 2561-326X
    ISSN (online) 2561-326X
    DOI 10.2196/36771
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Somatic comorbidities of mental disorders in pregnancy.

    Khachadourian, Vahe / Kodesh, Arad / Levine, Stephen Z / Lin, Emma / Buxbaum, Joseph D / Bergink, Veerle / Sandin, Sven / Reichenberg, Abraham / Janecka, Magdalena

    European psychiatry : the journal of the Association of European Psychiatrists

    2023  Volume 66, Issue 1, Page(s) e15

    Abstract: Background: Mental and physical health conditions are frequently comorbid. Despite the widespread physiological and behavioral changes during pregnancy, the pattern of comorbidities among women in pregnancy is not well studied. This study aimed to ... ...

    Abstract Background: Mental and physical health conditions are frequently comorbid. Despite the widespread physiological and behavioral changes during pregnancy, the pattern of comorbidities among women in pregnancy is not well studied. This study aimed to systematically examine the associations between mental and somatic disorders before and during pregnancy.
    Method: The study used data from mothers of a nationally representative birth cohort of children born in Israel (1997-2008). We compared the risk of all major somatic disorders (International Classification of Diseases, Ninth Revision) in pregnant women with and without a mental disorder. All analyses were adjusted for maternal age, child's birth year, family socioeconomic status, and the total number of maternal encounters with health services around pregnancy period.
    Results: The analytical sample included 77,030 mother-child dyads, with 30,083 unique mothers. The mean age at child's birth was 29.8 years. Prevalence of diagnosis of mental disorder around pregnancy in our sample was 4.4%. Comorbidity between mental and somatic disorders was two times higher than the comorbidity between pairs of different somatic disorders. Of the 17 somatic disorder categories, seven were positively associated with mental health disorders. The highly prevalent comorbidities associated with mental disorders in pregnancy included e.g. musculoskeletal (OR = 1.30; 95% CI = 1.20-1.42) and digestive system diseases (OR = 1.23; 95% CI = 1.13-1.34).
    Conclusions: We observed that associations between maternal diagnoses and mental health stand out from the general pattern of comorbidity between nonmental health diseases. The study results confirm the need for screening for mental disorders during pregnancy and for potential comorbid conditions associated with mental disorders.
    MeSH term(s) Female ; Humans ; Pregnancy ; Adult ; Mental Disorders/epidemiology ; Comorbidity ; Mothers/psychology ; Mental Health ; Maternal Age
    Language English
    Publishing date 2023-01-16
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 1074337-6
    ISSN 1778-3585 ; 0767-399X ; 0924-9338
    ISSN (online) 1778-3585
    ISSN 0767-399X ; 0924-9338
    DOI 10.1192/j.eurpsy.2023.1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Association Between COVID-19 During Pregnancy and Preterm Birth by Trimester of Infection: A Retrospective Cohort Study Using Longitudinal Social Media Data.

    Klein, Ari Z / Kunatharaju, Shriya / Golder, Su / Levine, Lisa D / Figueiredo, Jane C / Gonzalez-Hernandez, Graciela

    medRxiv : the preprint server for health sciences

    2023  

    Abstract: Background: Preterm birth, defined as birth at <37 weeks of gestation, is the leading cause of neonatal death globally and, together with low birthweight, the second leading cause of infant mortality in the United States. There is mounting evidence that ...

    Abstract Background: Preterm birth, defined as birth at <37 weeks of gestation, is the leading cause of neonatal death globally and, together with low birthweight, the second leading cause of infant mortality in the United States. There is mounting evidence that COVID-19 infection during pregnancy is associated with an increased risk of preterm birth; however, data remain limited by trimester of infection. The ability to study COVID-19 infection during the earlier stages of pregnancy has been limited by available sources of data. The objective of this study was to use self-reports in large-scale, longitudinal social media data to assess the association between trimester of COVID-19 infection and preterm birth.
    Methods: In this retrospective cohort study, we used natural language processing and machine learning, followed by manual validation, to identify pregnant Twitter users and to search their longitudinal collection of publicly available tweets for reports of COVID-19 infection during pregnancy and, subsequently, a preterm birth or term birth (i.e., a gestational age ≥37 weeks) outcome. Among the users who reported their pregnancy on Twitter, we also identified a 1:1 age-matched control group, consisting of users with a due date prior to January 1, 2020-that is, without COVID-19 infection during pregnancy. We calculated the odds ratios (ORs) with 95% confidence intervals (CIs) to compare the overall rates of preterm birth for pregnancies with and without COVID-19 infection and by timing of infection: first trimester (weeks 1-13), second trimester (weeks 1427), or third trimester (weeks 28-36).
    Results: Through August 2022, we identified 298 Twitter users who reported COVID-19 infection during pregnancy, a preterm birth or term birth outcome, and maternal age: 94 (31.5%) with first-trimester infection, 110 (36.9%) second-trimester infection, and 95 (31.9%) third-trimester infection. In total, 26 (8.8%) of these 298 users reported preterm birth: 8 (8.5%) were infected during the first trimester, 7 (6.4%) were infected during the second trimester, and 12 (12.6%) were infected during the third trimester. In the 1:1 age-matched control group, 13 (4.4%) of the 298 users reported preterm birth. Overall, the risk of preterm birth was significantly higher for pregnancies with COVID-19 infection compared to those without (OR 2.1, 95% CI 1.06-4.16). In particular, the risk of preterm birth was significantly higher for pregnancies with COVID-19 infection during the third trimester (OR 3.17, CI 1.39-7.21).
    Conclusion: The results of our study suggest that COVID-19 infection particularly during the third trimester is associated with an increased risk of preterm birth.
    Language English
    Publishing date 2023-11-21
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.11.17.23298696
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Book ; Online: Random Close Packing is least random in three dimensions

    Wilken, Sam / Guo, Ashley Z. / Levine, Dov / Chaikin, Paul M.

    2022  

    Abstract: ... of configurations known as Random Close Packed (RCP) as its critical endpoint in dimension d=3. We conjecture ... that BRO likewise produces RCP in any dimension and come to the following conclusions: there is no RCP in d ... 1 or d=2 (where dynamics lead to crystalline order); in d=3, d=4, and d=5, we recover RCP behavior ...

    Abstract A simple dynamical model, Biased Random Organization, BRO, appears to produce the ensemble of configurations known as Random Close Packed (RCP) as its critical endpoint in dimension d=3. We conjecture that BRO likewise produces RCP in any dimension and come to the following conclusions: there is no RCP in d=1 or d=2 (where dynamics lead to crystalline order); in d=3, d=4, and d=5, we recover RCP behavior with previously estimated packing fractions 0.64, 0.45, and 0.30 respectively, and the systems are isostatic with average contact numbers 6, 8, and 10. BRO belongs to the Manna universality class of dynamical phase transitions, which has well-defined critical exponents and an upper critical dimension of 4. Exponents are mean field for $4 \le d \le \infty$, which we confirm in simulations. Further, a hyperscaling relation between the correlation function exponent and density fluctuations implies that when mean field exponents hold, density fluctuations are random and not hyperuniform. Hence, hyperuniformity in RCP is only observed in d=3.
    Keywords Condensed Matter - Statistical Mechanics ; Condensed Matter - Soft Condensed Matter
    Subject code 519 ; 612
    Publishing date 2022-12-19
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: Idiopathic portal vein thrombosis not related to hepatic disease or malignancy.

    Alkassis, Samer / Zaher, Nathan / Kaloti, Zaid / Levine, Diane

    BMJ case reports

    2021  Volume 14, Issue 11

    Abstract: Acute portal vein thrombosis (PVT) is a rare disorder defined by the sudden occlusion of the portal vein, which could be partial or complete. Prothrombotic states, inherited or acquired, are thought to be the cause in patients without cirrhosis or ... ...

    Abstract Acute portal vein thrombosis (PVT) is a rare disorder defined by the sudden occlusion of the portal vein, which could be partial or complete. Prothrombotic states, inherited or acquired, are thought to be the cause in patients without cirrhosis or malignancy. However, the aetiology of some cases remains idiopathic despite a multidisciplinary diagnostic approach. The initial diagnostic modality to confirm PVT is either contrast-enhanced abdominal (CT) or MRI; as it can identify predisposing factors, and detect evidence of complications. Eliciting the underlying aetiology is critical to guide overall management and prevent future recurrence. The purpose of treatment is to stop thrombus extension and achieve portal vein patency by anticoagulation to optimise outcomes. Herein, we present an unusual case of spontaneous PVT in a young woman. We will also discuss the evaluation of patients without obvious aetiology.
    MeSH term(s) Anticoagulants/therapeutic use ; Female ; Humans ; Neoplasms ; Portal Vein/diagnostic imaging ; Thrombosis ; Venous Thrombosis/diagnostic imaging ; Venous Thrombosis/drug therapy
    Chemical Substances Anticoagulants
    Language English
    Publishing date 2021-11-09
    Publishing country England
    Document type Case Reports ; Journal Article
    ISSN 1757-790X
    ISSN (online) 1757-790X
    DOI 10.1136/bcr-2021-245620
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Priorities, opportunities, and challenges for integrating microorganisms into Earth system models for climate change prediction.

    Lennon, J T / Abramoff, R Z / Allison, S D / Burckhardt, R M / DeAngelis, K M / Dunne, J P / Frey, S D / Friedlingstein, P / Hawkes, C V / Hungate, B A / Khurana, S / Kivlin, S N / Levine, N M / Manzoni, S / Martiny, A C / Martiny, J B H / Nguyen, N K / Rawat, M / Talmy, D /
    Todd-Brown, K / Vogt, M / Wieder, W R / Zakem, E J

    mBio

    2024  , Page(s) e0045524

    Abstract: Climate change jeopardizes human health, global biodiversity, and sustainability of the biosphere. To make reliable predictions about climate change, scientists use Earth system models (ESMs) that integrate physical, chemical, and biological processes ... ...

    Abstract Climate change jeopardizes human health, global biodiversity, and sustainability of the biosphere. To make reliable predictions about climate change, scientists use Earth system models (ESMs) that integrate physical, chemical, and biological processes occurring on land, the oceans, and the atmosphere. Although critical for catalyzing coupled biogeochemical processes, microorganisms have traditionally been left out of ESMs. Here, we generate a "top 10" list of priorities, opportunities, and challenges for the explicit integration of microorganisms into ESMs. We discuss the need for coarse-graining microbial information into functionally relevant categories, as well as the capacity for microorganisms to rapidly evolve in response to climate-change drivers. Microbiologists are uniquely positioned to collect novel and valuable information necessary for next-generation ESMs, but this requires data harmonization and transdisciplinary collaboration to effectively guide adaptation strategies and mitigation policy.
    Language English
    Publishing date 2024-03-25
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2557172-2
    ISSN 2150-7511 ; 2161-2129
    ISSN (online) 2150-7511
    ISSN 2161-2129
    DOI 10.1128/mbio.00455-24
    Database MEDical Literature Analysis and Retrieval System OnLINE

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