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  1. Article ; Online: Author's Response.

    Rogan, Walter J

    Pediatrics

    2014  Volume 134, Issue 4, Page(s) e1282

    MeSH term(s) Environmental Pollutants/toxicity ; Female ; Humans ; Iodine/deficiency ; Pregnancy
    Chemical Substances Environmental Pollutants ; Iodine (9679TC07X4)
    Language English
    Publishing date 2014-10
    Publishing country United States
    Document type Comment ; Letter
    ZDB-ID 207677-9
    ISSN 1098-4275 ; 0031-4005
    ISSN (online) 1098-4275
    ISSN 0031-4005
    DOI 10.1542/peds.2014-2111B
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Triclosan and prescription antibiotic exposures and enterolactone production in adults.

    Adgent, Margaret A / Rogan, Walter J

    Environmental research

    2015  Volume 142, Page(s) 66–71

    Abstract: Background: The gut microbiome plays an important role in the development of disease. The composition of the microbiome is influenced by factors such as mode of delivery at birth, diet and antibiotic use, yet the influence of environmental chemical ... ...

    Abstract Background: The gut microbiome plays an important role in the development of disease. The composition of the microbiome is influenced by factors such as mode of delivery at birth, diet and antibiotic use, yet the influence of environmental chemical exposures is largely unknown. The antimicrobial compound triclosan, found in many personal care products and widely detected in human urine, is an environmental exposure for which systemic microbiotic effects may be of particular interest. To investigate the relationship between triclosan and gut microflora, we assessed the association between triclosan and enterolactone, an intestinal metabolite that is produced via bacterial transformation of dietary lignans (seeds, nuts) and has known susceptibility to oral antibiotics.
    Methods: We examined urinary triclosan and enterolactone for 2005-2008 U.S. National Health and Nutrition Examination Survey subjects, aged ≥20 years (n=3041). We also examined the association between prescription antibiotic use and enterolactone to confirm its susceptibility to changes in bacterial composition of the body. Associations between natural log-transformed enterolactone and (1) detected vs. not detected (<2.3 ng/mL) triclosan, (2) triclosan quintiles (Q1-Q5), and (3) any vs. no antibiotics were estimated with multiple linear regression, adjusting for sex, age, race, body mass index, poverty income ratio, education, fiber intake, bowel movement frequency, cotinine and creatinine (n=2441).
    Results: Triclosan was detected in 80% of subjects (range: <2.3-3620 ng/mL), while enterolactone was detected in >99% of subjects (range: <0.1-122,000 ng/mL). After adjustment, enterolactone was not associated with triclosan (detect vs. non-detect: β= 0.07 (95% CI: -0.15, 0.30); Q5 (≥104.5 ng/mL) vs. Q1 (none): β= 0.06 (95% CI: -0.21, 0.34)). In sex-stratified analyses, triclosan was associated with higher enterolactone in women (detect vs. non-detect: β= 0.31 (95% CI: -0.07, 0.70), but not men β= -0.18 (95% CI: -0.47, 0.11). However, any antibiotic use (n=112), as compared to no antibiotic use, was associated with significantly lower enterolactone (β=-0.78 (95%CI: -1.22, -0.36)), with no sex-specific effects. This association was driven by inverse associations with the following antibiotic classes: macrolide derivatives, quinolones, sulfonamides, and lincomycin derivatives.
    Conclusions: Antibiotics, but not triclosan, are negatively associated with urinary enterolactone. Antibiotics may reduce enterolactone by killing certain gut bacteria. At levels detected in the U.S., triclosan does not appear to be acting similarly, despite broad antimicrobial properties. Additional study of determinants of triclosan exposure and enterolactone production may be needed to better understand positive associations among women.
    MeSH term(s) 4-Butyrolactone/analogs & derivatives ; 4-Butyrolactone/analysis ; 4-Butyrolactone/biosynthesis ; Adult ; Anti-Bacterial Agents/adverse effects ; Anti-Bacterial Agents/urine ; Female ; Gastrointestinal Microbiome/drug effects ; Gastrointestinal Microbiome/physiology ; Humans ; Lignans/analysis ; Lignans/biosynthesis ; Male ; Middle Aged ; Prescription Drugs ; Triclosan/adverse effects ; Triclosan/urine ; Young Adult
    Chemical Substances Anti-Bacterial Agents ; Lignans ; Prescription Drugs ; Triclosan (4NM5039Y5X) ; 4-Butyrolactone (OL659KIY4X) ; 2,3-bis(3'-hydroxybenzyl)butyrolactone (X01E7E1D6H)
    Language English
    Publishing date 2015-06-23
    Publishing country Netherlands
    Document type Journal Article ; Research Support, N.I.H., Intramural
    ZDB-ID 205699-9
    ISSN 1096-0953 ; 0013-9351
    ISSN (online) 1096-0953
    ISSN 0013-9351
    DOI 10.1016/j.envres.2015.06.017
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Early Life Anti-Müllerian Hormone Trajectories in Infant Girls.

    Chin, Helen B / Krall, Jenna R / Goldberg, Mandy / Stanczyk, Frank Z / Darge, Kassa / Stallings, Virginia A / Rogan, Walter J / Umbach, David M / Baird, Donna D

    Epidemiology (Cambridge, Mass.)

    2023  Volume 34, Issue 4, Page(s) 568–575

    Abstract: Background: Minipuberty is a period of increased reproductive axis activity in infancy, but the importance of this period is not well understood, especially in girls. Previous studies reported a peak in hormone concentrations at 3 to 4 months old. Our ... ...

    Abstract Background: Minipuberty is a period of increased reproductive axis activity in infancy, but the importance of this period is not well understood, especially in girls. Previous studies reported a peak in hormone concentrations at 3 to 4 months old. Our objective is to describe anti-Müllerian hormone (AMH) trajectories in the context of other minipuberty factors among healthy infant girls using longitudinal measures of AMH.
    Methods: The Infant Feeding and Early Development study is a longitudinal cohort study of healthy infants, recruited from hospitals in the Philadelphia area during 2010 to 2013. We measured AMH in 153 girls who contributed 1366 serum samples across 11 study visits over 36 weeks. We also measured follicle stimulating hormone (FSH), estradiol, and ovarian characteristics. We used latent class mixed effects models to cluster trajectories of AMH concentration with age. Using linear mixed models, we estimated FSH and ovarian characteristic trajectories separately by AMH cluster.
    Results: We classified infants into four clusters that represent patterns of AMH that were high and decreasing (decreasing), had a peak around 12 weeks or 20 weeks (early peak and middle peak), or were consistently low (low). Infants in these clusters differed in their FSH trajectories, timing of estradiol production, and ovarian characteristics.
    Conclusions: The AMH clusters identified suggest variation in the timing and the magnitude of the minipuberty response in infant girls. The decreasing and low clusters have not been described previously and should be further evaluated to determine whether they represent an opportunity for the early identification of later reproductive conditions.
    MeSH term(s) Female ; Infant ; Humans ; Longitudinal Studies ; Anti-Mullerian Hormone ; Follicle Stimulating Hormone ; Ovary ; Estradiol
    Chemical Substances Anti-Mullerian Hormone (80497-65-0) ; Follicle Stimulating Hormone (9002-68-0) ; Estradiol (4TI98Z838E)
    Language English
    Publishing date 2023-03-16
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1053263-8
    ISSN 1531-5487 ; 1044-3983
    ISSN (online) 1531-5487
    ISSN 1044-3983
    DOI 10.1097/EDE.0000000000001610
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Opposing functions of the plant TOPLESS gene family during SNC1-mediated autoimmunity.

    Garner, Christopher M / Spears, Benjamin J / Su, Jianbin / Cseke, Leland J / Smith, Samantha N / Rogan, Conner J / Gassmann, Walter

    PLoS genetics

    2021  Volume 17, Issue 2, Page(s) e1009026

    Abstract: Regulation of the plant immune system is important for controlling the specificity and amplitude of responses to pathogens and in preventing growth-inhibiting autoimmunity that leads to reductions in plant fitness. In previous work, we reported that ... ...

    Abstract Regulation of the plant immune system is important for controlling the specificity and amplitude of responses to pathogens and in preventing growth-inhibiting autoimmunity that leads to reductions in plant fitness. In previous work, we reported that SRFR1, a negative regulator of effector-triggered immunity, interacts with SNC1 and EDS1. When SRFR1 is non-functional in the Arabidopsis accession Col-0, SNC1 levels increase, causing a cascade of events that lead to autoimmunity phenotypes. Previous work showed that some members of the transcriptional co-repressor family TOPLESS interact with SNC1 to repress negative regulators of immunity. Therefore, to explore potential connections between SRFR1 and TOPLESS family members, we took a genetic approach that examined the effect of each TOPLESS member in the srfr1 mutant background. The data indicated that an additive genetic interaction exists between SRFR1 and two members of the TOPLESS family, TPR2 and TPR3, as demonstrated by increased stunting and elevated PR2 expression in srfr1 tpr2 and srfr1 tpr2 tpr3 mutants. Furthermore, the tpr2 mutation intensifies autoimmunity in the auto-active snc1-1 mutant, indicating a novel role of these TOPLESS family members in negatively regulating SNC1-dependent phenotypes. This negative regulation can also be reversed by overexpressing TPR2 in the srfr1 tpr2 background. Similar to TPR1 that positively regulates snc1-1 phenotypes by interacting with SNC1, we show here that TPR2 directly binds the N-terminal domain of SNC1. In addition, TPR2 interacts with TPR1 in vivo, suggesting that the opposite functions of TPR2 and TPR1 are based on titration of SNC1-TPR1 complexes by TPR2 or altered functions of a SNC1-TPR1-TPR2 complex. Thus, this work uncovers diverse functions of individual members of the TOPLESS family in Arabidopsis and provides evidence for the additive effect of transcriptional and post-transcriptional regulation of SNC1.
    MeSH term(s) Arabidopsis/genetics ; Arabidopsis/immunology ; Arabidopsis/metabolism ; Arabidopsis Proteins/genetics ; Arabidopsis Proteins/metabolism ; Autoimmunity/genetics ; Gene Expression Regulation, Plant/genetics ; Gene Expression Regulation, Plant/immunology ; Molecular Chaperones/genetics ; Molecular Chaperones/metabolism ; Mutation ; Plant Immunity/genetics ; Plants, Genetically Modified ; Up-Regulation
    Chemical Substances AT1G04130 protein, Arabidopsis ; Arabidopsis Proteins ; Molecular Chaperones ; SNC1 protein, Arabidopsis ; SRFR1 protein, Arabidopsis ; topless protein, Arabidopsis ; topless-related 1 protein, Arabidopsis
    Language English
    Publishing date 2021-02-23
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 2186725-2
    ISSN 1553-7404 ; 1553-7390
    ISSN (online) 1553-7404
    ISSN 1553-7390
    DOI 10.1371/journal.pgen.1009026
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: A globally integrated structure of taxonomy to support biodiversity science and conservation.

    Sandall, Emily L / Maureaud, Aurore A / Guralnick, Robert / McGeoch, Melodie A / Sica, Yanina V / Rogan, Matthew S / Booher, Douglas B / Edwards, Robert / Franz, Nico / Ingenloff, Kate / Lucas, Maisha / Marsh, Charles J / McGowan, Jennifer / Pinkert, Stefan / Ranipeta, Ajay / Uetz, Peter / Wieczorek, John / Jetz, Walter

    Trends in ecology & evolution

    2023  Volume 38, Issue 12, Page(s) 1143–1153

    Abstract: All aspects of biodiversity research, from taxonomy to conservation, rely on data associated with species names. Effective integration of names across multiple fields is paramount and depends on the coordination and organization of taxonomic data. We ... ...

    Abstract All aspects of biodiversity research, from taxonomy to conservation, rely on data associated with species names. Effective integration of names across multiple fields is paramount and depends on the coordination and organization of taxonomic data. We assess current efforts and find that even key applications for well-studied taxa still lack commonality in taxonomic information required for integration. We identify essential taxonomic elements from our interoperability assessment to support improved access and integration of taxonomic data. A stronger focus on these elements has the potential to involve taxonomic communities in biodiversity science and overcome broken linkages currently limiting research capacity. We encourage a community effort to democratize taxonomic expertise and language in order to facilitate maximum interoperability and integration.
    MeSH term(s) Biodiversity ; Classification ; Conservation of Natural Resources
    Language English
    Publishing date 2023-09-06
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 284965-3
    ISSN 1872-8383 ; 0169-5347
    ISSN (online) 1872-8383
    ISSN 0169-5347
    DOI 10.1016/j.tree.2023.08.004
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Pathogen-induced AdDjSKI of the wild peanut, Arachis diogoi, potentiates tolerance of multiple stresses in E. coli and tobacco.

    Rampuria, Sakshi / Bag, Pushan / Rogan, Conner J / Sharma, Akanksha / Gassmann, Walter / Kirti, P B

    Plant science : an international journal of experimental plant biology

    2018  Volume 272, Page(s) 62–74

    Abstract: ... J-protein potentiates not only abiotic stress tolerance in Nicotiana tabacum var. Samsun, but also ... containing J protein displays punctate localization in chloroplasts. AdDjSKI appears to ensure proper ...

    Abstract A gene encoding a serine-rich DnaJIII protein called AdDjSKI that has a 4Fe-4S cluster domain was found to be differentially upregulated in the wild peanut, Arachis diogoi in its resistance responses against the late leaf spot causing fungal pathogen Phaeoisariopsis personata when compared with the cultivated peanut, Arachis hypogaea. AdDjSKI is induced in multiple stress conditions in A. diogoi. Recombinant E. coli cells expressing AdDjSKI showed better growth kinetics when compared with vector control cells under salinity, osmotic, acidic and alkaline stress conditions. Overexpression of this type three J-protein potentiates not only abiotic stress tolerance in Nicotiana tabacum var. Samsun, but also enhances its disease resistance against the phytopathogenic fungi Phytophthora parasitica pv nicotianae and Sclerotinia sclerotiorum. In the present study we show transcriptional upregulation of APX, Mn-SOD and HSP70 under heat stress and increased transcripts of PR genes in response to fungal infection. This transmembrane-domain-containing J protein displays punctate localization in chloroplasts. AdDjSKI appears to ensure proper folding of proteins associated with the photosynthetic machinery under stress.
    MeSH term(s) Arachis/genetics ; Arachis/physiology ; Disease Resistance/genetics ; Disease Resistance/physiology ; Escherichia coli/genetics ; Escherichia coli/physiology ; Organisms, Genetically Modified ; Osmotic Pressure/physiology ; Plant Proteins/genetics ; Plant Proteins/physiology ; Plants, Genetically Modified ; RNA, Plant/genetics ; Real-Time Polymerase Chain Reaction ; Salt Tolerance/genetics ; Salt Tolerance/physiology ; Stress, Physiological/genetics ; Stress, Physiological/physiology ; Nicotiana/genetics ; Nicotiana/physiology
    Chemical Substances Plant Proteins ; RNA, Plant
    Language English
    Publishing date 2018-04-03
    Publishing country Ireland
    Document type Journal Article
    ZDB-ID 742010-9
    ISSN 1873-2259 ; 0168-9452
    ISSN (online) 1873-2259
    ISSN 0168-9452
    DOI 10.1016/j.plantsci.2018.03.033
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Species distribution models affected by positional uncertainty in species occurrences can still be ecologically interpretable

    Gábor, Lukáš / Jetz, Walter / Zarzo‐Arias, Alejandra / Winner, Kevin / Yanco, Scott / Pinkert, Stefan / Marsh, Charles J. / Rogan, Matthew S. / Mäkinen, Jussi / Rocchini, Duccio / Barták, Vojtěch / Malavasi, Marco / Balej, Petr / Moudrý, Vítězslav

    Ecography. 2023 June, v. 2023, no. 6 p.e06358-

    2023  

    Abstract: Species distribution models (SDMs) have become a common tool in studies of species–environment relationships but can be negatively affected by positional uncertainty of underlying species occurrence data. Previous work has documented the effect of ... ...

    Abstract Species distribution models (SDMs) have become a common tool in studies of species–environment relationships but can be negatively affected by positional uncertainty of underlying species occurrence data. Previous work has documented the effect of positional uncertainty on model predictive performance, but its consequences for inference about species–environment relationships remain largely unknown. Here we use over 12 000 combinations of virtual and real environmental variables and virtual species, as well as a real case study, to investigate how accurately SDMs can recover species–environment relationships after applying known positional errors to species occurrence data. We explored a range of environmental predictors with various spatial heterogeneity, species' niche widths, sample sizes and magnitudes of positional error. Positional uncertainty decreased predictive model performance for all modeled scenarios. The absolute and relative importance of environmental predictors and the shape of species–environmental relationships co‐varied with a level of positional uncertainty. These differences were much weaker than those observed for overall model performance, especially for homogenous predictor variables. This suggests that, at least for the example species and conditions analyzed, the negative consequences of positional uncertainty on model performance did not extend as strongly to the ecological interpretability of the models. Although the findings are encouraging for practitioners using SDMs to reveal generative mechanisms based on spatially uncertain data, they suggest greater consequences for applications utilizing distributions predicted from SDMs using positionally uncertain data, such as conservation prioritization and biodiversity monitoring.
    Keywords biodiversity ; case studies ; geographical distribution ; model validation ; prioritization ; spatial variation ; uncertainty
    Language English
    Dates of publication 2023-06
    Publishing place Blackwell Publishing Ltd
    Document type Article ; Online
    Note JOURNAL ARTICLE
    ZDB-ID 1112659-0
    ISSN 0906-7590
    ISSN 0906-7590
    DOI 10.1111/ecog.06358
    Database NAL-Catalogue (AGRICOLA)

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  8. Article ; Online: Response to Letter to the Editor From Pierre Bougnères: "Reproductive Hormone Concentrations and Associated Anatomical Responses: Does Soy Formula Affect Minipuberty in Boys?"

    Chin, Helen B / Kelly, Andrea / Adgent, Margaret A / Patchel, Stacy A / James, Kerry / Chandler, Donald Walt / Zemel, Babette S / Schall, Joan I / Ford, Eileen G / Darge, Kassa / Stallings, Virginia A / Baird, Donna D / Rogan, Walter J / Umbach, David M

    The Journal of clinical endocrinology and metabolism

    2021  Volume 107, Issue 2, Page(s) e894–e895

    MeSH term(s) Humans ; Infant Formula ; Luteinizing Hormone ; Male
    Chemical Substances Luteinizing Hormone (9002-67-9)
    Language English
    Publishing date 2021-10-06
    Publishing country United States
    Document type Letter ; Research Support, N.I.H., Intramural ; Comment
    ZDB-ID 3029-6
    ISSN 1945-7197 ; 0021-972X
    ISSN (online) 1945-7197
    ISSN 0021-972X
    DOI 10.1210/clinem/dgab718
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Camera trapping expands the view into global biodiversity and its change.

    Oliver, Ruth Y / Iannarilli, Fabiola / Ahumada, Jorge / Fegraus, Eric / Flores, Nicole / Kays, Roland / Birch, Tanya / Ranipeta, Ajay / Rogan, Matthew S / Sica, Yanina V / Jetz, Walter

    Philosophical transactions of the Royal Society of London. Series B, Biological sciences

    2023  Volume 378, Issue 1881, Page(s) 20220232

    Abstract: Growing threats to biodiversity demand timely, detailed information on species occurrence, diversity and abundance at large scales. Camera traps (CTs), combined with computer vision models, provide an efficient method to survey species of certain taxa ... ...

    Abstract Growing threats to biodiversity demand timely, detailed information on species occurrence, diversity and abundance at large scales. Camera traps (CTs), combined with computer vision models, provide an efficient method to survey species of certain taxa with high spatio-temporal resolution. We test the potential of CTs to close biodiversity knowledge gaps by comparing CT records of terrestrial mammals and birds from the recently released Wildlife Insights platform to publicly available occurrences from many observation types in the Global Biodiversity Information Facility. In locations with CTs, we found they sampled a greater number of days (mean = 133 versus 57 days) and documented additional species (mean increase of 1% of expected mammals). For species with CT data, we found CTs provided novel documentation of their ranges (93% of mammals and 48% of birds). Countries with the largest boost in data coverage were in the historically underrepresented southern hemisphere. Although embargoes increase data providers' willingness to share data, they cause a lag in data availability. Our work shows that the continued collection and mobilization of CT data, especially when combined with data sharing that supports attribution and privacy, has the potential to offer a critical lens into biodiversity. This article is part of the theme issue 'Detecting and attributing the causes of biodiversity change: needs, gaps and solutions'.
    MeSH term(s) Animals ; Biodiversity ; Animals, Wild ; Mammals ; Birds ; Knowledge
    Language English
    Publishing date 2023-05-29
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 208382-6
    ISSN 1471-2970 ; 0080-4622 ; 0264-3839 ; 0962-8436
    ISSN (online) 1471-2970
    ISSN 0080-4622 ; 0264-3839 ; 0962-8436
    DOI 10.1098/rstb.2022.0232
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Drinking water from private wells and risks to children.

    Rogan, Walter J / Brady, Michael T

    Pediatrics

    2009  Volume 123, Issue 6, Page(s) e1123–37

    Abstract: Drinking water for approximately one sixth of US households is obtained from private wells. These wells can become contaminated by pollutant chemicals or pathogenic organisms, leading to significant illness. Although the US Environmental Protection ... ...

    Abstract Drinking water for approximately one sixth of US households is obtained from private wells. These wells can become contaminated by pollutant chemicals or pathogenic organisms, leading to significant illness. Although the US Environmental Protection Agency and all states offer guidance for construction, maintenance, and testing of private wells, there is little regulation, and with few exceptions, well owners are responsible for their own wells. Children may also drink well water at child care or when traveling. Illness resulting from children's ingestion of contaminated water can be severe. This report reviews relevant aspects of groundwater and wells; describes the common chemical and microbiologic contaminants; gives an algorithm with recommendations for inspection, testing, and remediation for wells providing drinking water for children; reviews the definitions and uses of various bottled waters; provides current estimates of costs for well testing; and provides federal, national, state, and, where appropriate, tribal contacts for more information.
    MeSH term(s) Adolescent ; Algorithms ; Child ; Child, Preschool ; Colony Count, Microbial ; Colony-Forming Units Assay ; Escherichia coli ; Gastroenteritis/microbiology ; Gastroenteritis/prevention & control ; Humans ; Infant ; Nitrates/adverse effects ; Nitrates/analysis ; United States ; United States Environmental Protection Agency/legislation & jurisprudence ; Water Microbiology/standards ; Water Pollutants, Chemical/adverse effects ; Water Pollutants, Chemical/analysis ; Water Purification/legislation & jurisprudence ; Water Purification/standards ; Water Supply/analysis ; Water Supply/legislation & jurisprudence ; Water Supply/standards
    Chemical Substances Nitrates ; Water Pollutants, Chemical
    Language English
    Publishing date 2009-06
    Publishing country United States
    Document type Journal Article
    ZDB-ID 207677-9
    ISSN 1098-4275 ; 0031-4005
    ISSN (online) 1098-4275
    ISSN 0031-4005
    DOI 10.1542/peds.2009-0752
    Database MEDical Literature Analysis and Retrieval System OnLINE

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