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  1. Article: Safety of Tocilizumab in COVID-19 Patients and Benefit of Single-Dose: The Largest Retrospective Observational Study.

    Al-Qaaneh, Ayman M / Al-Ghamdi, Fuad H / AbdulAzeez, Sayed / Borgio, J Francis

    Pharmaceutics

    2022  Volume 14, Issue 3

    Abstract: Severe acute respiratory coronavirus-2 (SARS-CoV-2) still presents a public threat and puts extra strain on healthcare facilities. Without an effective antiviral drug, all available treatment options are considered supportive. Tocilizumab as a treatment ... ...

    Abstract Severe acute respiratory coronavirus-2 (SARS-CoV-2) still presents a public threat and puts extra strain on healthcare facilities. Without an effective antiviral drug, all available treatment options are considered supportive. Tocilizumab as a treatment option has to date shown variable results. In this retrospective study, we aimed to assess predictors of mortality of COVID-19 patients (n = 300) on tocilizumab and the clinical effectiveness of this drug. The results showed that ICU admission OR = 64.6 (95% CI: 8.2, 507.4); age of the patient OR = 1.1 (95% CI: 1.0, 1.1); and number of tocilizumab doses administered by the patient OR(two doses) = 4.0 (95% CI: 1.5, 10.9), OR(three doses) = 1.5 (95% CI: 0.5, 5.1), and OR(four doses or more) = 7.2 (95% CI: 2.0, 25.5) presented strong correlation factors that may be linked to COVID-19 mortality. Furthermore, our study showed the beneficial effects of early administration of tocilizumab OR = 1.2 (95% CI: 1.1, 1.4) and longer hospital length of stay OR = 0.974 (95% CI: 0.9, 1.0) in reducing COVID-19 mortalities. High blood D-dimer concentration OR = 1.1 (95% CI: 1.0, 1.2) and reciprocal blood phosphate concentration OR = 0.008 (95% CI: 0.0, 1.2) were correlated to high mortality under SARS-CoV-2 infection. The short-term effect of a single dose of tocilizumab was a significant increase in blood BUN and liver enzymes (ALT, AST, and LDH) above their normal ranges. Furthermore, it significantly reduced CRP blood concentration, but not to normal levels (13.90 to 1.40 mg/dL, p < 0.001). Assessing the effect of different doses of tocilizumab (in terms of the number of doses, total mg, and total mg/kg administered by the patients) indicated that administering more than one dose may lead to increases in ICU length of stay and hospital length of stay of up to 14 and 22 days after the last dose of tocilizumab (6 to 14, p = 0.06, and 10 to 22, p < 0.001), with no improvement in 28- and 90-day mortality, as confirmed by Kaplan−Meier analysis. There were also clear correlations and trends between the number of doses of tocilizumab and increased blood CO2, MCV, RDW, and D-dimer concentrations and between number of doses of tocilizumab and decreased CRP, AST, and hemoglobin concentrations. Microbiology analysis showed a significant increase in the incidence of infection after tocilizumab administration (28 to 119, p < 0.001) with a median time of incidence within 6 days of the first dose of tocilizumab. A significant correlation was also found between the number of tocilizumab doses and the number of incidences of infections after tocilizumab administration r (298) = 0.396, p = 1.028 × 10−12. Based on these results and depending on the pharmacokinetic parameters of the drug, we recommend single-dose administration of tocilizumab as the optimal dosage for COVID-19 patients who do not have active bacterial infection or liver diseases, to be administered as soon as the patient is admitted to the hospital.
    Language English
    Publishing date 2022-03-11
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2527217-2
    ISSN 1999-4923
    ISSN 1999-4923
    DOI 10.3390/pharmaceutics14030624
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: State-of-the-art tools to identify druggable protein ligand of SARS-CoV-2.

    Azeez, Sayed Abdul / Alhashim, Zahra Ghalib / Al Otaibi, Waad Mohammed / Alsuwat, Hind Saleh / Ibrahim, Abdallah M / Almandil, Noor B / Borgio, J Francis

    Archives of medical science : AMS

    2020  Volume 16, Issue 3, Page(s) 497–507

    Abstract: Introduction: The SARS-CoV-2 (previously 2019-nCoV) outbreak in Wuhan, China and other parts of the world affects people and spreads coronavirus disease 2019 (COVID-19) through human-to-human contact, with a mortality rate of > 2%. There are no approved ...

    Abstract Introduction: The SARS-CoV-2 (previously 2019-nCoV) outbreak in Wuhan, China and other parts of the world affects people and spreads coronavirus disease 2019 (COVID-19) through human-to-human contact, with a mortality rate of > 2%. There are no approved drugs or vaccines yet available against SARS-CoV-2.
    Material and methods: State-of-the-art tools based on in-silico methods are a cost-effective initial approach for identifying appropriate ligands against SARS-CoV-2. The present study developed the 3D structure of the envelope and nucleocapsid phosphoprotein of SARS-CoV-2, and molecular docking analysis was done against various ligands.
    Results: The highest log octanol/water partition coefficient, high number of hydrogen bond donors and acceptors, lowest non-bonded interaction energy between the receptor and the ligand, and high binding affinity were considered for the best ligand for the envelope (mycophenolic acid: log
    Conclusions: The study identifies the most potent compounds against the SARS-CoV-2 envelope and nucleocapsid phosphoprotein through state-of-the-art tools based on an in-silico approach. A combination of these two ligands could be the best option to consider for further detailed studies to develop a drug for treating patients infected with SARS-CoV-2, COVID-19.
    Keywords covid19
    Language English
    Publishing date 2020-03-27
    Publishing country Poland
    Document type Journal Article
    ZDB-ID 2203781-0
    ISSN 1734-1922
    ISSN 1734-1922
    DOI 10.5114/aoms.2020.94046
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Exome-wide analysis identify multiple variations in olfactory receptor genes (

    Almandil, Noor B / Alismail, Maram Adnan / Alsuwat, Hind Saleh / AlSulaiman, Abdulla / AbdulAzeez, Sayed / Borgio, J Francis

    Frontiers in medicine

    2023  Volume 10, Page(s) 1051039

    Abstract: Background: Autism Spectrum Disorder (ASD) is a multifactorial, neurodevelopmental disorder, characterized by deficits in communication, restricted and repetitive behaviors. ASD is highly heritable in Saudi Arabia; indecencies of affected individuals ... ...

    Abstract Background: Autism Spectrum Disorder (ASD) is a multifactorial, neurodevelopmental disorder, characterized by deficits in communication, restricted and repetitive behaviors. ASD is highly heritable in Saudi Arabia; indecencies of affected individuals are increasing.
    Objectives: To identify the most significant genes and SNPs associated with the increased risk of ASD in Saudi females to give an insight for early diagnosis.
    Methods: Pilot case-control study mostly emphasized on the significant SNPs and haplotypes contributing to Saudi females with ASD patients (
    Results: In females, five risk SNPs at
    Conclusion: Multiple variations in olfactory receptor genes (
    Language English
    Publishing date 2023-02-01
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2775999-4
    ISSN 2296-858X
    ISSN 2296-858X
    DOI 10.3389/fmed.2023.1051039
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Genomic Insights into Virulence Factors and Multi-Drug Resistance in

    AlJindan, Reem / AlEraky, Doaa M / Farhat, Maha / Almandil, Noor B / AbdulAzeez, Sayed / Borgio, Jesu Francis

    Toxins

    2023  Volume 15, Issue 6

    Abstract: Clostridium ... ...

    Abstract Clostridium perfringens
    MeSH term(s) Animals ; Humans ; Clostridium perfringens ; Virulence Factors/genetics ; RNA, Ribosomal, 16S ; Genomics ; Anti-Bacterial Agents/pharmacology ; Drug Resistance, Multiple ; Clostridium Infections/microbiology
    Chemical Substances Virulence Factors ; RNA, Ribosomal, 16S ; Anti-Bacterial Agents
    Language English
    Publishing date 2023-05-25
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2518395-3
    ISSN 2072-6651 ; 2072-6651
    ISSN (online) 2072-6651
    ISSN 2072-6651
    DOI 10.3390/toxins15060359
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Haemoglobin switching modulator SNPs rs5006884 is associated with increased HbA

    Cyrus, Cyril / Vatte, Chittibabu / Chathoth, Shahanas / Sayed, Abdul Azeez / Borgio, J Francis / Alrubaish, Mohammed Abdullah / Alfalah, Rawan / Alsaikhan, Jana / Al Ali, Amein K

    Archives of medical science : AMS

    2019  Volume 17, Issue 4, Page(s) 1064–1074

    Abstract: Introduction: Haemoglobin A: Material and methods: 14 Specific SNPs in : Results: Elevated HbA: Conclusions: The haemoglobin switching modulators rs2071348, rs7482144, and rs5006884 are involved in regulation of ... ...

    Abstract Introduction: Haemoglobin A
    Material and methods: 14 Specific SNPs in
    Results: Elevated HbA
    Conclusions: The haemoglobin switching modulators rs2071348, rs7482144, and rs5006884 are involved in regulation of HbA
    Language English
    Publishing date 2019-07-18
    Publishing country Poland
    Document type Journal Article
    ZDB-ID 2203781-0
    ISSN 1734-1922
    ISSN 1734-1922
    DOI 10.5114/aoms.2019.86705
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: A comprehensive review of the prevalence of beta globin gene variations and the co-inheritance of related gene variants in Saudi Arabians with beta-thalassemia.

    Alaithan, Mousa A / AbdulAzeez, Sayed / Borgio, J Francis

    Saudi medical journal

    2018  Volume 39, Issue 4, Page(s) 329–335

    Abstract: Beta-thalassemia is a genetic disorder that is caused by variations in the beta-hemoglobin (HBB) gene. Saudi Arabia is among the countries most affected bybeta-thalassemia, and this is particularly problematic in the Eastern regions. This review article ... ...

    Abstract Beta-thalassemia is a genetic disorder that is caused by variations in the beta-hemoglobin (HBB) gene. Saudi Arabia is among the countries most affected bybeta-thalassemia, and this is particularly problematic in the Eastern regions. This review article is an attempt to compile all the reported mutations to facilitate further national-level studies to prepare a Saudi repository of HBB gene variations. In Saudi Arabians, IVSI-5 (G greater than C) and Cd 39 (C greater than T) are the most prevalent HBB gene variations out of 42 variations. The coinheritance of HBB gene variations with ATRX, HBA1, HBA2, HBA12, AHSP, and KLF1 gene variations were observed to be common in the Saudi population. National surveys on the molecular nature of hemoglobinopathies should be set up through collaborations between research centers from various regions to create a well-documented molecular data bank. This data bank can be used to develop a premarital screening program and lead to the best treatment and prevention strategies for beta-thalassemia.
    MeSH term(s) Blood Proteins/genetics ; Databases, Genetic ; Glycated Hemoglobin/genetics ; Humans ; Kruppel-Like Transcription Factors/genetics ; Molecular Chaperones/genetics ; Mutation ; Saudi Arabia ; X-linked Nuclear Protein/genetics ; beta-Globins/genetics ; beta-Thalassemia/genetics
    Chemical Substances AHSP protein, human ; Blood Proteins ; Glycated Hemoglobin A ; Kruppel-Like Transcription Factors ; Molecular Chaperones ; beta-Globins ; erythroid Kruppel-like factor ; ATRX protein, human (EC 3.6.4.12) ; X-linked Nuclear Protein (EC 3.6.4.12)
    Language English
    Publishing date 2018-02-01
    Publishing country Saudi Arabia
    Document type Journal Article ; Review
    ZDB-ID 392302-2
    ISSN 1658-3175 ; 0379-5284
    ISSN (online) 1658-3175
    ISSN 0379-5284
    DOI 10.15537/smj.2018.4.21360
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Exome-wide analysis identify multiple variations in olfactory receptor genes (OR12D2 and OR5V1) associated with autism spectrum disorder in Saudi females

    Noor B. Almandil / Maram Adnan Alismail / Hind Saleh Alsuwat / Abdulla AlSulaiman / Sayed AbdulAzeez / J. Francis Borgio

    Frontiers in Medicine, Vol

    2023  Volume 10

    Abstract: BackgroundAutism Spectrum Disorder (ASD) is a multifactorial, neurodevelopmental disorder, characterized by deficits in communication, restricted and repetitive behaviors. ASD is highly heritable in Saudi Arabia; indecencies of affected individuals are ... ...

    Abstract BackgroundAutism Spectrum Disorder (ASD) is a multifactorial, neurodevelopmental disorder, characterized by deficits in communication, restricted and repetitive behaviors. ASD is highly heritable in Saudi Arabia; indecencies of affected individuals are increasing.ObjectivesTo identify the most significant genes and SNPs associated with the increased risk of ASD in Saudi females to give an insight for early diagnosis.MethodsPilot case–control study mostly emphasized on the significant SNPs and haplotypes contributing to Saudi females with ASD patients (n = 22) compared to controls (n = 51) without ASD. With the use of allelic association analysis tools, 243,345 SNPs were studied systematically and classified according to their significant association. The significant SNPs and their genes were selected for further investigation for mapping of ASD candidate causal variants and functional impact.ResultsIn females, five risk SNPs at p ≤ 2.32 × 10−05 was identified in association with autism. The most significant exonic variants at chromosome 6p22.1 with olfactory receptor genes (OR12D2 and OR5V1) clustered with high linkage disequilibrium through haplotyping analysis. Comparison between highly associated genes (56 genes) of male and female autistic patients with female autistic samples revealed that 39 genes are unique biomarkers for Saudi females with ASD.ConclusionMultiple variations in olfactory receptor genes (OR5V1 and OR12D2) and single variations on SPHK1, PLCL2, AKAP9 and LOC107984893 genes are contributing to ASD in females of Arab origin. Accumulation of these multiple predisposed coding SNPs can increase the possibility of developing ASD in Saudi females.
    Keywords autism spectrum disorder ; Saudi females ; coding variants ; single nucleotide polymorphism ; haplotyping ; Medicine (General) ; R5-920
    Subject code 590 ; 616
    Language English
    Publishing date 2023-02-01T00:00:00Z
    Publisher Frontiers Media S.A.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article ; Online: Genomic Insights into Virulence Factors and Multi-Drug Resistance in Clostridium perfringens IRMC2505A

    Reem AlJindan / Doaa M. AlEraky / Maha Farhat / Noor B. Almandil / Sayed AbdulAzeez / Jesu Francis Borgio

    Toxins, Vol 15, Iss 359, p

    2023  Volume 359

    Abstract: Clostridium perfringens is a spore-forming, Gram-positive anaerobic pathogen that causes several disorders in humans and animals. A multidrug-resistant Clostridium strain was isolated from the fecal sample of a patient who was clinically suspected of ... ...

    Abstract Clostridium perfringens is a spore-forming, Gram-positive anaerobic pathogen that causes several disorders in humans and animals. A multidrug-resistant Clostridium strain was isolated from the fecal sample of a patient who was clinically suspected of gastrointestinal infection and had a recent history of antibiotic exposure and diarrhea. The strain was identified by 16s rRNA sequencing as Clostridium perfringens . The strain’s pathogenesis was analyzed through its complete genome, specifically antimicrobial resistance-related genes. The Clostridium perfringens IRMC2505A genome contains 19 ( Alr , Ddl , dxr , EF-G , EF-Tu , folA , Dfr , folP , gyrA , gyrB , Iso-tRNA , kasA , MurA , rho , rpoB , rpoC , S10p , and S12p ) antibiotic-susceptible genetic species according to the k-mer-based detection of antimicrobial resistance genes. Genome mapping using CARD and VFDB databases revealed significant ( p -value = 1 × 10 −26 ) genes with aligned reads against antibiotic-resistant genes or virulence factors, including phospholipase C, perfringolysin O, collagenase, hyaluronidase, alpha-clostripain, exo-alpha-sialidase, and sialidase activity. In conclusion, this is the first report on C. perfringens from Saudi Arabia that conducted whole genome sequencing of IRMC2505A and confirmed the strain as an MDR bacterium with several virulence factors. Developing control strategies requires a detailed understanding of the epidemiology of C. perfringens , its virulence factors, and regional antimicrobial resistance patterns.
    Keywords Clostridium ; anaerobic pathogen ; multi-drug resistant ; genome mapping ; resistance genes ; virulence ; Medicine ; R
    Subject code 572
    Language English
    Publishing date 2023-05-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article: A Pilot Mitochondrial Genome-Wide Association on Migraine Among Saudi Arabians.

    Al Asoom, Lubna / Khan, Johra / Al Sunni, Ahmad / Rafique, Nazish / Latif, Rabia / Alabdali, Majed / AbdulAzeez, Sayed / Borgio, J Francis

    International journal of general medicine

    2022  Volume 15, Page(s) 6249–6258

    Abstract: Background: Mitochondrial DNA (mtDNA) mutations have been reported in multiple neurological diseases and helped to explain the pathophysiology of these diseases. Similarly, variations in mtDNA might exist in migraine and can explain the effect of low ... ...

    Abstract Background: Mitochondrial DNA (mtDNA) mutations have been reported in multiple neurological diseases and helped to explain the pathophysiology of these diseases. Similarly, variations in mtDNA might exist in migraine and can explain the effect of low ATP production in the neurons on the initiation of migraine attack. Therefore, in the current study we aim to explore the association of mtDNA mutations on migraine in the Saudi population.
    Subjects and methods: Over 1950 young Saudi female students were screened for migraine, among that a total of 103 satisfied the ICHD-3 criteria. However,  20 migraine cases confirmed in the neurology clinic and gave consent to participate in the study. Another 20 age-matched healthy controls were also recruited. Mitochondrial sequence variations were filtered from exome sequencing using NCBI GenBank Reference Sequence: NC_012920.1 and analysed using MITOMAP. Genes with significant single nucleotide polymorphisms (SNPs) were investigated by the gene functional classification tool DAVID and functional enrichment analysis of protein-protein interaction networks through STRING 11.5 for the most significant associated genes.
    Results: Genome wide analysis of the mitochondrial sequence variations between the patients with migraine and control revealed the association of 30 SNPs (
    Conclusion: This is the first study to demonstrate the association of mtDNA variations with migraine in the Saudi population. The current findings will help to highlight the significance of mtDNA mutations to migraine pathophysiology and will serve as a reference data for larger national and international studies.
    Language English
    Publishing date 2022-07-21
    Publishing country New Zealand
    Document type Journal Article
    ZDB-ID 2452220-X
    ISSN 1178-7074
    ISSN 1178-7074
    DOI 10.2147/IJGM.S371707
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Novel Feather Degrading Keratinases from

    Almahasheer, Arwa Ali / Mahmoud, Amal / El-Komy, Hesham / Alqosaibi, Amany I / Aktar, Sultan / AbdulAzeez, Sayed / Borgio, J Francis

    Microorganisms

    2022  Volume 10, Issue 1

    Abstract: In this study, five keratinolytic bacteria were isolated from poultry farm waste of Eastern Province, Saudi Arabia. The highest keratinase activity was obtained at 40-45 °C, pH 8-9, feather concentration 0.5-1%, and using white chicken feather as keratin ...

    Abstract In this study, five keratinolytic bacteria were isolated from poultry farm waste of Eastern Province, Saudi Arabia. The highest keratinase activity was obtained at 40-45 °C, pH 8-9, feather concentration 0.5-1%, and using white chicken feather as keratin substrate for 72 h. Enhancement of keratinase activity through physical mutagen UV radiation and/or chemical mutagen ethyl methanesulfonate (EMS) resulted in five mutants with 1.51-3.73-fold increased activity over the wild type. When compared with the wild type, scanning electron microscopy validated the mutants' effectiveness in feather degradation. Bacterial isolates are classified as members of the S8 family peptidase
    Language English
    Publishing date 2022-01-01
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2720891-6
    ISSN 2076-2607
    ISSN 2076-2607
    DOI 10.3390/microorganisms10010093
    Database MEDical Literature Analysis and Retrieval System OnLINE

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