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  1. Article ; Online: Automated bone mineral density prediction and fracture risk assessment using plain radiographs via deep learning

    Chen-I Hsieh / Kang Zheng / Chihung Lin / Ling Mei / Le Lu / Weijian Li / Fang-Ping Chen / Yirui Wang / Xiaoyun Zhou / Fakai Wang / Guotong Xie / Jing Xiao / Shun Miao / Chang-Fu Kuo

    Nature Communications, Vol 12, Iss 1, Pp 1-

    2021  Volume 9

    Abstract: Dual-energy X-ray absorptiometry and the Fracture Risk Assessment Tool are recommended tools for osteoporotic fracture risk evaluation, but are underutilized. Here, the authors present an opportunistic tool to identify fractures, predict bone mineral ... ...

    Abstract Dual-energy X-ray absorptiometry and the Fracture Risk Assessment Tool are recommended tools for osteoporotic fracture risk evaluation, but are underutilized. Here, the authors present an opportunistic tool to identify fractures, predict bone mineral density and evaluate fracture risk using plain pelvis and lumbar spine radiographs.
    Keywords Science ; Q
    Language English
    Publishing date 2021-09-01T00:00:00Z
    Publisher Nature Portfolio
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: In vivo CRISPR screening reveals nutrient signaling processes underpinning CD8

    Huang, Hongling / Zhou, Peipei / Wei, Jun / Long, Lingyun / Shi, Hao / Dhungana, Yogesh / Chapman, Nicole M / Fu, Guotong / Saravia, Jordy / Raynor, Jana L / Liu, Shaofeng / Palacios, Gustavo / Wang, Yong-Dong / Qian, Chenxi / Yu, Jiyang / Chi, Hongbo

    Cell

    2021  Volume 184, Issue 5, Page(s) 1245–1261.e21

    Abstract: How early events in effector T cell ( ... ...

    Abstract How early events in effector T cell (T
    MeSH term(s) Amino Acid Transport Systems/metabolism ; Amino Acids/metabolism ; Animals ; CD8-Positive T-Lymphocytes/cytology ; CD8-Positive T-Lymphocytes/immunology ; CRISPR-Cas Systems ; Cell Cycle ; Cell Differentiation ; Disease Models, Animal ; Female ; Gene Knock-In Techniques ; Immunologic Memory ; Lymphocytic Choriomeningitis/immunology ; Male ; Mice ; Mice, Transgenic ; Precursor Cells, T-Lymphoid/cytology ; Signal Transduction
    Chemical Substances Amino Acid Transport Systems ; Amino Acids
    Language English
    Publishing date 2021-02-25
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 187009-9
    ISSN 1097-4172 ; 0092-8674
    ISSN (online) 1097-4172
    ISSN 0092-8674
    DOI 10.1016/j.cell.2021.02.021
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Automated bone mineral density prediction and fracture risk assessment using plain radiographs via deep learning.

    Hsieh, Chen-I / Zheng, Kang / Lin, Chihung / Mei, Ling / Lu, Le / Li, Weijian / Chen, Fang-Ping / Wang, Yirui / Zhou, Xiaoyun / Wang, Fakai / Xie, Guotong / Xiao, Jing / Miao, Shun / Kuo, Chang-Fu

    Nature communications

    2021  Volume 12, Issue 1, Page(s) 5472

    Abstract: Dual-energy X-ray absorptiometry (DXA) is underutilized to measure bone mineral density (BMD) and evaluate fracture risk. We present an automated tool to identify fractures, predict BMD, and evaluate fracture risk using plain radiographs. The tool ... ...

    Abstract Dual-energy X-ray absorptiometry (DXA) is underutilized to measure bone mineral density (BMD) and evaluate fracture risk. We present an automated tool to identify fractures, predict BMD, and evaluate fracture risk using plain radiographs. The tool performance is evaluated on 5164 and 18175 patients with pelvis/lumbar spine radiographs and Hologic DXA. The model is well calibrated with minimal bias in the hip (slope = 0.982, calibration-in-the-large = -0.003) and the lumbar spine BMD (slope = 0.978, calibration-in-the-large = 0.003). The area under the precision-recall curve and accuracy are 0.89 and 91.7% for hip osteoporosis, 0.89 and 86.2% for spine osteoporosis, 0.83 and 95.0% for high 10-year major fracture risk, and 0.96 and 90.0% for high hip fracture risk. The tool classifies 5206 (84.8%) patients with 95% positive or negative predictive value for osteoporosis, compared to 3008 DXA conducted at the same study period. This automated tool may help identify high-risk patients for osteoporosis.
    MeSH term(s) Absorptiometry, Photon/methods ; Adult ; Aged ; Aged, 80 and over ; Algorithms ; Bone Density ; Deep Learning ; Female ; Fractures, Bone/diagnostic imaging ; Fractures, Bone/physiopathology ; Hip Fractures/diagnostic imaging ; Hip Fractures/physiopathology ; Humans ; Lumbar Vertebrae/diagnostic imaging ; Lumbar Vertebrae/physiopathology ; Male ; Middle Aged ; Osteoporosis/diagnostic imaging ; Osteoporosis/physiopathology ; Risk Assessment/methods ; Risk Assessment/statistics & numerical data ; Risk Factors ; Sensitivity and Specificity
    Language English
    Publishing date 2021-09-16
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2553671-0
    ISSN 2041-1723 ; 2041-1723
    ISSN (online) 2041-1723
    ISSN 2041-1723
    DOI 10.1038/s41467-021-25779-x
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: SNX10 promotes phagosome maturation in macrophages and protects mice against

    Lou, Jun / Li, Xiawei / Huang, Wei / Liang, Jingjing / Zheng, Mingzhu / Xu, Ting / Lyu, Jun / Li, Dan / Xu, Qin / Jin, Xuexiao / Fu, Guotong / Wang, Di / Lu, Linrong

    Oncotarget

    2017  Volume 8, Issue 33, Page(s) 53935–53947

    Abstract: ... Listeria ... ...

    Abstract Listeria monocytogenes
    Language English
    Publishing date 2017-08-15
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2560162-3
    ISSN 1949-2553 ; 1949-2553
    ISSN (online) 1949-2553
    ISSN 1949-2553
    DOI 10.18632/oncotarget.19644
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Metabolic control of T

    Fu, Guotong / Guy, Clifford S / Chapman, Nicole M / Palacios, Gustavo / Wei, Jun / Zhou, Peipei / Long, Lingyun / Wang, Yong-Dong / Qian, Chenxi / Dhungana, Yogesh / Huang, Hongling / Kc, Anil / Shi, Hao / Rankin, Sherri / Brown, Scott A / Johnson, Amanda / Wakefield, Randall / Robinson, Camenzind G / Liu, Xueyan /
    Sheyn, Anthony / Yu, Jiyang / Jackowski, Suzanne / Chi, Hongbo

    Nature

    2021  Volume 595, Issue 7869, Page(s) 724–729

    Abstract: T follicular helper ( ... ...

    Abstract T follicular helper (T
    MeSH term(s) Animals ; B-Lymphocytes/immunology ; CRISPR-Cas Systems ; Cell Differentiation ; Cytidine Diphosphate ; Female ; Gene Expression Regulation ; Humans ; Immunity, Humoral ; Leukocytes, Mononuclear/immunology ; Lymphocyte Activation ; Male ; Mice ; Mice, Inbred C57BL ; Mice, Transgenic ; Phosphatidylethanolamines/metabolism ; Phosphotransferases (Alcohol Group Acceptor) ; RNA Nucleotidyltransferases ; Receptors, CXCR5/immunology ; Signal Transduction ; T-Lymphocytes, Helper-Inducer/immunology
    Chemical Substances Phosphatidylethanolamines ; Receptors, CXCR5 ; phosphatidylethanolamine (39382-08-6) ; Cytidine Diphosphate (63-38-7) ; Phosphotransferases (Alcohol Group Acceptor) (EC 2.7.1.-) ; ethanolamine kinase (EC 2.7.1.82) ; RNA Nucleotidyltransferases (EC 2.7.7.-) ; Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14)
    Language English
    Publishing date 2021-07-07
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 120714-3
    ISSN 1476-4687 ; 0028-0836
    ISSN (online) 1476-4687
    ISSN 0028-0836
    DOI 10.1038/s41586-021-03692-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Book ; Online: Scalable Semi-supervised Landmark Localization for X-ray Images using Few-shot Deep Adaptive Graph

    Zhou, Xiao-Yun / Lai, Bolin / Li, Weijian / Wang, Yirui / Zheng, Kang / Wang, Fakai / Lin, Chihung / Lu, Le / Huang, Lingyun / Han, Mei / Xie, Guotong / Xiao, Jing / Chang-Fu, Kuo / Harrison, Adam / Miao, Shun

    2021  

    Abstract: Landmark localization plays an important role in medical image analysis. Learning based methods, including CNN and GCN, have demonstrated the state-of-the-art performance. However, most of these methods are fully-supervised and heavily rely on manual ... ...

    Abstract Landmark localization plays an important role in medical image analysis. Learning based methods, including CNN and GCN, have demonstrated the state-of-the-art performance. However, most of these methods are fully-supervised and heavily rely on manual labeling of a large training dataset. In this paper, based on a fully-supervised graph-based method, DAG, we proposed a semi-supervised extension of it, termed few-shot DAG, \ie five-shot DAG. It first trains a DAG model on the labeled data and then fine-tunes the pre-trained model on the unlabeled data with a teacher-student SSL mechanism. In addition to the semi-supervised loss, we propose another loss using JS divergence to regulate the consistency of the intermediate feature maps. We extensively evaluated our method on pelvis, hand and chest landmark detection tasks. Our experiment results demonstrate consistent and significant improvements over previous methods.

    Comment: 10 pages
    Keywords Computer Science - Computer Vision and Pattern Recognition ; Computer Science - Artificial Intelligence ; Computer Science - Machine Learning
    Subject code 006
    Publishing date 2021-04-29
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article ; Online: Phosphatase PP2A is essential for T

    Xu, Qin / Jin, Xuexiao / Zheng, Mingzhu / Rohila, Deepak / Fu, Guotong / Wen, Zhuoyu / Lou, Jun / Wu, Songquan / Sloan, Richard / Wang, Lie / Hu, Hu / Gao, Xiang / Lu, Linrong

    Proceedings of the National Academy of Sciences of the United States of America

    2018  Volume 116, Issue 3, Page(s) 982–987

    Abstract: Phosphatase PP2A expression levels are positively correlated to the clinical severity of systemic lupus erythematosus (SLE) and IL17A cytokine overproduction, indicating a potential role of PP2A in controlling ... ...

    Abstract Phosphatase PP2A expression levels are positively correlated to the clinical severity of systemic lupus erythematosus (SLE) and IL17A cytokine overproduction, indicating a potential role of PP2A in controlling T
    MeSH term(s) Animals ; Cell Differentiation/genetics ; Cell Differentiation/immunology ; Encephalomyelitis, Autoimmune, Experimental/genetics ; Encephalomyelitis, Autoimmune, Experimental/immunology ; Encephalomyelitis, Autoimmune, Experimental/pathology ; Interleukin-17/genetics ; Interleukin-17/immunology ; Mice ; Mice, Knockout ; Nuclear Receptor Subfamily 1, Group F, Member 3/genetics ; Nuclear Receptor Subfamily 1, Group F, Member 3/immunology ; Phosphorylation/genetics ; Phosphorylation/immunology ; Protein Phosphatase 2/genetics ; Protein Phosphatase 2/immunology ; Smad2 Protein/genetics ; Smad2 Protein/immunology ; Th17 Cells/immunology ; Th17 Cells/pathology ; Transcription, Genetic/immunology
    Chemical Substances Il17a protein, mouse ; Interleukin-17 ; Nuclear Receptor Subfamily 1, Group F, Member 3 ; Smad2 Protein ; Smad2 protein, mouse ; Protein Phosphatase 2 (EC 3.1.3.16)
    Language English
    Publishing date 2018-12-28
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 209104-5
    ISSN 1091-6490 ; 0027-8424
    ISSN (online) 1091-6490
    ISSN 0027-8424
    DOI 10.1073/pnas.1807484116
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: CRISPR screens unveil signal hubs for nutrient licensing of T cell immunity.

    Long, Lingyun / Wei, Jun / Lim, Seon Ah / Raynor, Jana L / Shi, Hao / Connelly, Jon P / Wang, Hong / Guy, Cliff / Xie, Boer / Chapman, Nicole M / Fu, Guotong / Wang, Yanyan / Huang, Hongling / Su, Wei / Saravia, Jordy / Risch, Isabel / Wang, Yong-Dong / Li, Yuxin / Niu, Mingming /
    Dhungana, Yogesh / Kc, Anil / Zhou, Peipei / Vogel, Peter / Yu, Jiyang / Pruett-Miller, Shondra M / Peng, Junmin / Chi, Hongbo

    Nature

    2021  Volume 600, Issue 7888, Page(s) 308–313

    Abstract: Nutrients are emerging regulators of adaptive ... ...

    Abstract Nutrients are emerging regulators of adaptive immunity
    MeSH term(s) Animals ; Female ; Male ; Mice ; Carrier Proteins/metabolism ; CRISPR-Cas Systems/genetics ; Forkhead Transcription Factors/metabolism ; Gene Editing ; Genome/genetics ; Homeostasis ; Immune Tolerance ; Inflammation/pathology ; Mechanistic Target of Rapamycin Complex 1/metabolism ; Neoplasms/immunology ; Nuclear Proteins/metabolism ; Nutrients/metabolism ; Proteasome Endopeptidase Complex/metabolism ; Protein Interaction Maps ; Proteolysis ; S-Phase Kinase-Associated Proteins/metabolism ; T-Lymphocytes, Regulatory/immunology ; T-Lymphocytes, Regulatory/metabolism ; Trans-Activators/metabolism
    Chemical Substances Carrier Proteins ; castor1 protein, mouse ; Forkhead Transcription Factors ; Foxp3 protein, mouse ; Mechanistic Target of Rapamycin Complex 1 (EC 2.7.11.1) ; Nuclear Proteins ; Proteasome Endopeptidase Complex (EC 3.4.25.1) ; S-Phase Kinase-Associated Proteins ; SAGA complex, mouse ; Sec13 protein, mouse ; SEC31A protein, mouse ; Trans-Activators ; Sgf29 protein, mouse
    Language English
    Publishing date 2021-11-18
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 120714-3
    ISSN 1476-4687 ; 0028-0836
    ISSN (online) 1476-4687
    ISSN 0028-0836
    DOI 10.1038/s41586-021-04109-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Suppression of Th17 cell differentiation by misshapen/NIK-related kinase MINK1.

    Fu, Guotong / Xu, Qin / Qiu, Yuanjun / Jin, Xuexiao / Xu, Ting / Dong, Shunli / Wang, Jianli / Ke, Yuehai / Hu, Hu / Cao, Xuetao / Wang, Di / Cantor, Harvey / Gao, Xiang / Lu, Linrong

    The Journal of experimental medicine

    2017  Volume 214, Issue 5, Page(s) 1453–1469

    Abstract: T helper type 17 cells (Th17 cells) are major contributors to many autoimmune diseases. In this study, we demonstrate that the germinal center kinase family member MINK1 (misshapen/NIK-related kinase 1) negatively regulates Th17 cell differentiation. The ...

    Abstract T helper type 17 cells (Th17 cells) are major contributors to many autoimmune diseases. In this study, we demonstrate that the germinal center kinase family member MINK1 (misshapen/NIK-related kinase 1) negatively regulates Th17 cell differentiation. The suppressive effect of MINK1 on induction of Th17 cells is mediated by the inhibition of SMAD2 activation through direct phosphorylation of SMAD2 at the T324 residue. The importance of MINK1 to Th17 cell differentiation was strengthened in the animal model of experimental autoimmune encephalomyelitis (EAE). Moreover, we show that the reactive oxygen species (ROS) scavenger
    MeSH term(s) Animals ; Cell Differentiation/physiology ; Disease Models, Animal ; Encephalomyelitis, Autoimmune, Experimental/physiopathology ; Male ; Mice ; Mice, Knockout ; Protein-Serine-Threonine Kinases/physiology ; Reactive Oxygen Species/metabolism ; Smad2 Protein/physiology ; Th17 Cells/physiology
    Chemical Substances Reactive Oxygen Species ; Smad2 Protein ; Smad2 protein, mouse ; MINK7 protein, mouse (EC 2.7.11.1) ; Protein-Serine-Threonine Kinases (EC 2.7.11.1)
    Language English
    Publishing date 2017-04-11
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 218343-2
    ISSN 1540-9538 ; 0022-1007
    ISSN (online) 1540-9538
    ISSN 0022-1007
    DOI 10.1084/jem.20161120
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: [Photolumimescence character of novel phthalocyanine].

    Xia, Dao-cheng / Gao, Fu-bin / Ma, Chun-yu / Yu, Shu-kun / Ji, Dong-mei / Du, Xi-guang / Du, Guo-tong

    Guang pu xue yu guang pu fen xi = Guang pu

    2008  Volume 28, Issue 8, Page(s) 1745–1748

    Abstract: In the present paper, the authors study the photolumimescence spectra of the novel 2,3-tetra-(2-isopropyl-5-methylbenzoyl) hydrogen phthalocyanine casting film and vacuum-deposited film. Photolumimescence spectras of casting film on the quartz substrate ... ...

    Abstract In the present paper, the authors study the photolumimescence spectra of the novel 2,3-tetra-(2-isopropyl-5-methylbenzoyl) hydrogen phthalocyanine casting film and vacuum-deposited film. Photolumimescence spectras of casting film on the quartz substrate were measured at 10, 77, 177 and 300 K, and the photolumimescence spectra of vacuum-deposited film with a thickness of about 200 nm on the silicon substrate was studied at room temperature (300 K). For 2,3-tetra-(2-isopropyl-5-methylbenzoyl) hydrogen phthalocyanine, the casting films all show fluorescence peaks at 942, 937, 942 and 942 nm and phosphorescence peaks at 1114, 1057, 1114 and 1114 nm in the photolumimescence spectra at 10, 77, 177 and 300 K, respectively. In the cases of 2,3-tetra-(2-isopropyl-5-methyl -benzoyl) hydrogen phthalocyanine, the peaks of excimers, which are related with the resistance ability of molecular aggregation, were found around 1673 nm as observed from photolumimescence spectra of the novel phthalocyanine casting films at 177 and 300 K. And the peak of excimers at 300 K is stronger than at 177 K also as can be seen from photolumimescence spectra of its casting films. With the increase in the temperature, the fluorescence peak was weakened and the peaks of excimers became stronger from the photoluminescence spectra of 2,3-tetra-(2-isopropyl-5-methylbenzoyl) hydrogen phthalocyanine casting films at 10, 77, 177 and 300 K. At the same time, the authors discussed the reason for coming into being 2,3-tetra-(2-isopropyl-5-methylbenzoyl) hydrogen phthalocyanine excimers as can be concluded from the structure of 2,3-tetra-(2-isopropyl-5-methylbenzoyl) hydrogen phthalocyanine molecules through the parameters of Chem 3D Ultra 9.0 MM2 calculation and simulated diagram of C4h isomer of 2,3-tetra-(2-isopropyl-5-methylbenzoyl) hydrogen phthalocyanine. The peaks of casting film and vacuum-deposited film of 2,3-tetra-(2-isopropyl-5-methyl -benzoyl) hydrogen phthalocyanine presented different maximum emission wavelength and full width at half maximum. The peak of 2,3-tetra-(2-isopropyl-5-methyl-benzoyl) hydrogen phthalocyanine vacuum-deposited films displays the maximum emission wavelengths around 1140 nm, while the maximum emission wavelengths of casting films show obvious differences compared with the vacuum-deposited films. The usual full width at half maximum is approximately 300 nm for casting film, which is in contrasts with that the full width at half maximum is about 100 nm for the vacuum-deposited film as can be seen from photolumimescence spectra of 2,3-tetra-(2-isopropyl-5-methylbenzoyl) hydrogen phthalocyanine casting film and photolumimescence spectra of 2,3-tetra-(2-isopropyl-5-methylbenzoyl) hydrogen phthalocyanine vacuum-deposited film.
    Language Chinese
    Publishing date 2008-08
    Publishing country China
    Document type English Abstract ; Journal Article
    ISSN 1000-0593
    ISSN 1000-0593
    Database MEDical Literature Analysis and Retrieval System OnLINE

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