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  1. Article ; Online: Identification of animal species by nucleic acid chromatography of hair samples and investigation of its applicability to human biological samples.

    Saito, Koichi / Ito, Rie / Sekiya, Chiharu / Akiyama, Hiroshi

    Forensic science international

    2023  Volume 351, Page(s) 111811

    Abstract: GeneFields®-Hair is a simple analysis kit that uses nucleic acid chromatography and polymerase chain reaction (PCR) to identify animal species of hair-like food contaminants. In this study, we evaluated GeneFields®-Hair as a simple and rapid method for ... ...

    Abstract GeneFields®-Hair is a simple analysis kit that uses nucleic acid chromatography and polymerase chain reaction (PCR) to identify animal species of hair-like food contaminants. In this study, we evaluated GeneFields®-Hair as a simple and rapid method for identifying animal species from hair-like materials collected in forensic science, such as at crime scenes. The use of this kit with other human biological materials (whole blood, head dandruff, nails, saliva, oral mucosa, sebum, and urine) was also investigated. Animal body hair samples were pretreated by grinding in a buffer solution, centrifuged, and the supernatant was used for PCR. Nucleic acid chromatography of the PCR products allowed the identification of the animal species by the presence or absence of coloration on the decision line. For human biological materials, nucleic acid chromatography was performed after the appropriate pretreatment like body hair material. The determination of some animal species was difficult, even if they had a dedicated DNA Strip determination line. Furthermore, animals from the same family but different genera were sometimes detected on the same determination line. All the human biological samples were correctly identified. Smartphone photographs of the coloration of the judgment line were processed using the ImageJ software for quantitative determination.
    MeSH term(s) Animals ; Humans ; Nucleic Acids ; Body Fluids ; Chromatography ; Crime ; Hair
    Chemical Substances Nucleic Acids
    Language English
    Publishing date 2023-08-23
    Publishing country Ireland
    Document type Journal Article
    ZDB-ID 424042-x
    ISSN 1872-6283 ; 0379-0738
    ISSN (online) 1872-6283
    ISSN 0379-0738
    DOI 10.1016/j.forsciint.2023.111811
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Comparative Evaluation of Fundus Image Interpretation Accuracy in Glaucoma Screening Among Different Physician Groups [Response to Letter].

    Wada-Koike, Chiharu / Terauchi, Ryo / Fukai, Kota / Sano, Kei / Nishijima, Euido / Komatsu, Koji / Ito, Kyoko / Kato, Tomohiro / Tatemichi, Masayuki / Kabata, Yoshiaki / Nakano, Tadashi

    Clinical ophthalmology (Auckland, N.Z.)

    2024  Volume 18, Page(s) 847–848

    Language English
    Publishing date 2024-03-15
    Publishing country New Zealand
    Document type Journal Article ; Comment
    ISSN 1177-5467
    ISSN 1177-5467
    DOI 10.2147/OPTH.S467970
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  3. Article ; Online: Contribution of mutation I142M in fusion protein and Q44R in matrix protein of Newcastle disease virus to virulence in ducks.

    Hidaka, Chiharu / Soda, Kosuke / Ito, Toshihiro / Ito, Hiroshi

    The Journal of veterinary medical science

    2021  Volume 84, Issue 1, Page(s) 121–128

    Abstract: Although verogenic Newcastle disease viruses (NDVs) generally cause subclinical infection in waterfowls such as ducks, NDVs with high virulence in waterfowl have been sporadically reported. We previously reported that the NDV d5a20b strain, which is ... ...

    Abstract Although verogenic Newcastle disease viruses (NDVs) generally cause subclinical infection in waterfowls such as ducks, NDVs with high virulence in waterfowl have been sporadically reported. We previously reported that the NDV d5a20b strain, which is obtained by serial passaging of the velogenic 9a5b strain in domestic ducks, showed increased virulence in ducks (Hidaka et al., 2021). The d5a20b strain had 11 amino acid substitutions in its P/V, M, F, HN, and L proteins as compared to 9a5b. In the present study, we generated a series of recombinant (r) NDVs with these amino acid substitutions to identify the molecular basis of virulence of NDV in ducks, and evaluated their influences on virulence and in vitro viral properties. Each of the single amino acid substitutions in either the F protein I142M or the M protein Q44R contributed to the enhancement of intracerebral and intranasal pathogenicity in domestic ducks. The cell-cell fusion activity of the virus with F I142M was five times higher than that of the parental r9a5b. The virus with M Q44R rapidly replicated in duck embryo fibroblasts. Additionally, the rM+F+HN strain, which has the same amino acid sequences as d5a20b in M, F, and HN proteins, showed the highest level of virulence and replication efficiency among the generated recombinant viruses, nearly comparable to rd5a20b. These results suggest that multiple factors are involved in the high growth ability of NDV in duck cells, leading to increased virulence in vivo.
    MeSH term(s) Animals ; Ducks ; Mutation ; Newcastle Disease ; Newcastle disease virus/genetics ; Virulence
    Language English
    Publishing date 2021-12-02
    Publishing country Japan
    Document type Journal Article
    ZDB-ID 1071753-5
    ISSN 1347-7439 ; 0916-7250
    ISSN (online) 1347-7439
    ISSN 0916-7250
    DOI 10.1292/jvms.21-0527
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  4. Article: Incidental Hyperferritinemia in Very Young Infants with Mild Symptoms of COVID-19 Disease.

    Shishido, Yuka / Nakamura, Haruhiko / Nakagawa, Tomohiro / Kanou, Shinsuke / Ito, Takeshi / Kuwana, Shota / Ota, Chiharu

    Children (Basel, Switzerland)

    2023  Volume 10, Issue 5

    Abstract: Background: The number of children infected with novel coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has increased during the outbreak of the Omicron strain. Hyperferritinemia has been ... ...

    Abstract Background: The number of children infected with novel coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has increased during the outbreak of the Omicron strain. Hyperferritinemia has been reported in severe cases of COVID-19, and in children or neonates with multisystem inflammatory syndrome (MIS). Hyperferritinemia is considered to be one of the signs of MIS, but thus far, there have been few summarized reports on it. We retrospectively analyzed four infants less than 3 months of age with SARS-CoV-2 infections treated in our institution during the outbreak of the Omicron strain.
    Results: most patients were in good condition, but hyperferritinemia was observed in all of four cases.
    Conclusions: Hyperferritinemia can be observed in infantile COVID-19 patients even with mild symptoms. It is necessary to carefully monitor their clinical course and monitor the patients.
    Language English
    Publishing date 2023-05-12
    Publishing country Switzerland
    Document type Case Reports
    ZDB-ID 2732685-8
    ISSN 2227-9067
    ISSN 2227-9067
    DOI 10.3390/children10050874
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  5. Article ; Online: Structural and functional analysis of hyper-thermostable ancestral L-amino acid oxidase that can convert Trp derivatives to D-forms by chemoenzymatic reaction.

    Kawamura, Yui / Ishida, Chiharu / Miyata, Ryo / Miyata, Azusa / Hayashi, Seiichiro / Fujinami, Daisuke / Ito, Sohei / Nakano, Shogo

    Communications chemistry

    2023  Volume 6, Issue 1, Page(s) 200

    Abstract: Production of D-amino acids (D-AAs) on a large-scale enables to provide precursors of peptide therapeutics. In this study, we designed a novel L-amino acid oxidase, HTAncLAAO2, by ancestral sequence reconstruction, exhibiting high thermostability and ... ...

    Abstract Production of D-amino acids (D-AAs) on a large-scale enables to provide precursors of peptide therapeutics. In this study, we designed a novel L-amino acid oxidase, HTAncLAAO2, by ancestral sequence reconstruction, exhibiting high thermostability and long-term stability. The crystal structure of HTAncLAAO2 was determined at 2.2 Å by X-ray crystallography, revealing that the enzyme has an octameric form like a "ninja-star" feature. Enzymatic property analysis demonstrated that HTAncLAAO2 exhibits three-order larger k
    Language English
    Publishing date 2023-09-22
    Publishing country England
    Document type Journal Article
    ZDB-ID 2929562-2
    ISSN 2399-3669 ; 2399-3669
    ISSN (online) 2399-3669
    ISSN 2399-3669
    DOI 10.1038/s42004-023-01005-1
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  6. Article ; Online: Highly sensitive

    Ito, Shiho / Miwa, Kyoko / Hattori, Chiharu / Aida, Tetsuo / Tsuchiya, Yoshimi / Mori, Kazuhiko

    Journal of immunotoxicology

    2021  Volume 18, Issue 1, Page(s) 136–143

    Abstract: Immunostimulatory effects of monoclonal antibodies (mAb) through binding to ... ...

    Abstract Immunostimulatory effects of monoclonal antibodies (mAb) through binding to F
    MeSH term(s) Antibodies, Monoclonal ; Cytokine Release Syndrome ; Cytokines ; Humans ; Leukocytes, Mononuclear
    Chemical Substances Antibodies, Monoclonal ; Cytokines
    Language English
    Publishing date 2021-10-13
    Publishing country England
    Document type Journal Article
    ZDB-ID 2205064-4
    ISSN 1547-6901 ; 1547-691X
    ISSN (online) 1547-6901
    ISSN 1547-691X
    DOI 10.1080/1547691X.2021.1984617
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  7. Article ; Online: Butyrate, Valerate, and Niacin Ameliorate Anaphylaxis by Suppressing IgE-Dependent Mast Cell Activation: Roles of GPR109A, PGE2, and Epigenetic Regulation.

    Nagata, Kazuki / Ando, Daisuke / Ashikari, Tsubasa / Ito, Kandai / Miura, Ryosuke / Fujigaki, Izumi / Goto, Yuki / Ando, Miki / Ito, Naoto / Kawazoe, Hibiki / Iizuka, Yuki / Inoue, Mariko / Yashiro, Takuya / Hachisu, Masakazu / Kasakura, Kazumi / Nishiyama, Chiharu

    Journal of immunology (Baltimore, Md. : 1950)

    2024  Volume 212, Issue 5, Page(s) 771–784

    Abstract: Short-chain fatty acids (SCFAs) are produced by the intestinal microbiota during the fermentation of dietary fibers as secondary metabolites. Several recent studies reported that SCFAs modulate the development and function of immune-related cells. ... ...

    Abstract Short-chain fatty acids (SCFAs) are produced by the intestinal microbiota during the fermentation of dietary fibers as secondary metabolites. Several recent studies reported that SCFAs modulate the development and function of immune-related cells. However, the molecular mechanisms by which SCFAs regulate mast cells (MCs) remain unclear. In the current study, we analyzed the function and gene expression of mouse MCs in the presence of SCFAs in vitro and in vivo. We found that the oral administration of valerate or butyrate ameliorated passive systemic anaphylaxis and passive cutaneous anaphylaxis in mice. The majority of SCFAs, particularly propionate, butyrate, valerate, and isovalerate, suppressed the IgE-mediated degranulation of bone marrow-derived MCs, which were eliminated by the Gi protein inhibitor pertussis toxin and by the knockdown of Gpr109a. A treatment with the HDAC inhibitor trichostatin A also suppressed IgE-mediated MC activation and reduced the surface expression level of FcεRI on MCs. Acetylsalicylic acid and indomethacin attenuated the suppressive effects of SCFAs on degranulation. The degranulation degree was significantly reduced by PGE2 but not by PGD2. Furthermore, SCFAs enhanced PGE2 release from stimulated MCs. The SCFA-mediated amelioration of anaphylaxis was exacerbated by COX inhibitors and an EP3 antagonist, but not by an EP4 antagonist. The administration of niacin, a ligand of GPR109A, alleviated the symptoms of passive cutaneous anaphylaxis, which was inhibited by cyclooxygenase inhibitors and the EP3 antagonist. We conclude that SCFAs suppress IgE-mediated activation of MCs in vivo and in vitro involving GPR109A, PGE2, and epigenetic regulation.
    MeSH term(s) Mice ; Animals ; Anaphylaxis/drug therapy ; Anaphylaxis/metabolism ; Niacin/pharmacology ; Niacin/metabolism ; Dinoprostone/metabolism ; Butyrates/pharmacology ; Butyrates/metabolism ; Valerates/metabolism ; Mast Cells/metabolism ; Epigenesis, Genetic ; Immunoglobulin E/metabolism ; Cell Degranulation
    Chemical Substances Niacin (2679MF687A) ; Dinoprostone (K7Q1JQR04M) ; Butyrates ; Valerates ; Immunoglobulin E (37341-29-0)
    Language English
    Publishing date 2024-01-10
    Publishing country United States
    Document type Journal Article
    ZDB-ID 3056-9
    ISSN 1550-6606 ; 0022-1767 ; 1048-3233 ; 1047-7381
    ISSN (online) 1550-6606
    ISSN 0022-1767 ; 1048-3233 ; 1047-7381
    DOI 10.4049/jimmunol.2300188
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  8. Article ; Online: Runx2 Regulates

    Jiang, Qing / Qin, Xin / Moriishi, Takeshi / Fukuyama, Ryo / Katsumata, Shinichi / Matsuzaki, Hiroshi / Komori, Hisato / Matsuo, Yuki / Sakane, Chiharu / Ito, Kosei / Hojo, Hironori / Ohba, Shinsuke / Komori, Toshihisa

    International journal of molecular sciences

    2024  Volume 25, Issue 4

    Abstract: Runx2 (runt related transcription factor 2) is an essential transcription factor for osteoblast proliferation and differentiation. Uridine diphosphate (UDP)-N-acetylgalactosamine (GalNAc): polypeptide GalNAc-transferase 3 (Galnt3) prevents proteolytic ... ...

    Abstract Runx2 (runt related transcription factor 2) is an essential transcription factor for osteoblast proliferation and differentiation. Uridine diphosphate (UDP)-N-acetylgalactosamine (GalNAc): polypeptide GalNAc-transferase 3 (Galnt3) prevents proteolytic processing of fibroblast growth factor 23 (Fgf23), which is a hormone that regulates the serum level of phosphorus.
    MeSH term(s) Animals ; Female ; Male ; Mice ; Calcinosis/metabolism ; Core Binding Factor Alpha 1 Subunit/genetics ; Fibroblast Growth Factors/metabolism ; N-Acetylgalactosaminyltransferases/genetics ; N-Acetylgalactosaminyltransferases/metabolism ; Osteoblasts/metabolism ; Phosphorus ; Polypeptide N-acetylgalactosaminyltransferase ; Calcification, Physiologic
    Chemical Substances Core Binding Factor Alpha 1 Subunit ; Fibroblast Growth Factors (62031-54-3) ; N-Acetylgalactosaminyltransferases (EC 2.4.1.-) ; Phosphorus (27YLU75U4W) ; Polypeptide N-acetylgalactosaminyltransferase (EC 2.4.1.41) ; Runx2 protein, mouse
    Language English
    Publishing date 2024-02-14
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms25042275
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  9. Article ; Online: Complete genome sequence of

    Moriuchi, Ryota / Sano, Rion / Fujii, Shuma / Suzuki, Yuito / Makita, Miyune / Kawashima, Yo / Shirakawa, Takumi / Shindo, Renki / Shinkai, Tatsumi / Miura, Kaede / Hirose, Moka / Nakajima, Momiji / Kurokawa, Asahi / Chetia, Rituparna / Hirokawa, Chiharu / Suzuki, Tomoko / Ito, Yukiko / Murano, Hiroki / Dohra, Hideo /
    Ogawa, Naoto / Kanesaki, Yu

    Microbiology resource announcements

    2024  Volume 13, Issue 4, Page(s) e0123523

    Abstract: ... ...

    Abstract Paraburkholderia
    Language English
    Publishing date 2024-03-15
    Publishing country United States
    Document type Journal Article
    ISSN 2576-098X
    ISSN (online) 2576-098X
    DOI 10.1128/mra.01235-23
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  10. Article ; Online: Reaction Mechanism of Ancestral l-Lys α-Oxidase from

    Motoyama, Tomoharu / Yamamoto, Yuta / Ishida, Chiharu / Hasebe, Fumihito / Kawamura, Yui / Shigeta, Yasuteru / Ito, Sohei / Nakano, Shogo

    ACS omega

    2022  Volume 7, Issue 48, Page(s) 44407–44419

    Abstract: The flavin-dependent amine oxidase superfamily contains various l-amino acid oxidases (LAAOs) bearing different substrate specificities and enzymatic properties. LAAOs catalyze the oxidation of the α-amino group of l-amino acids (L-AAs) to produce imino ... ...

    Abstract The flavin-dependent amine oxidase superfamily contains various l-amino acid oxidases (LAAOs) bearing different substrate specificities and enzymatic properties. LAAOs catalyze the oxidation of the α-amino group of l-amino acids (L-AAs) to produce imino acids and H
    Language English
    Publishing date 2022-11-17
    Publishing country United States
    Document type Journal Article
    ISSN 2470-1343
    ISSN (online) 2470-1343
    DOI 10.1021/acsomega.2c06334
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