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  1. Book: Expression and analysis of recombinant ion channels

    Clare, Jeffrey J.

    from structural studies to pharmacological screening

    2006  

    Author's details ed. by Jeffrey J. Clare
    Keywords Ionenkanal ; Rekombinantes Protein
    Subject Rekombinante Substanz ; Hybrid-Protein ; Rekombiniertes Protein ; Fusionsprotein
    Language English
    Size XXIX, 273 S. : Ill., graph. Darst.
    Publisher Wiley-VCH
    Publishing place Weinheim
    Publishing country Germany
    Document type Book
    HBZ-ID HT014563827
    ISBN 978-3-527-31209-2 ; 3-527-31209-9
    Database Catalogue ZB MED Medicine, Health

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  2. Article ; Online: MoSDeF-GOMC: Python Software for the Creation of Scientific Workflows for the Monte Carlo Simulation Engine GOMC.

    Crawford, Brad / Timalsina, Umesh / Quach, Co D / Craven, Nicholas C / Gilmer, Justin B / McCabe, Clare / Cummings, Peter T / Potoff, Jeffrey J

    Journal of chemical information and modeling

    2023  Volume 63, Issue 4, Page(s) 1218–1228

    Abstract: MoSDeF-GOMC is a python interface for the Monte Carlo software GOMC to the Molecular Simulation Design Framework (MoSDeF) ecosystem. MoSDeF-GOMC automates the process of generating initial coordinates, assigning force field parameters, and writing ... ...

    Abstract MoSDeF-GOMC is a python interface for the Monte Carlo software GOMC to the Molecular Simulation Design Framework (MoSDeF) ecosystem. MoSDeF-GOMC automates the process of generating initial coordinates, assigning force field parameters, and writing coordinate (PDB), connectivity (PSF), force field parameter, and simulation control files. The software lowers entry barriers for novice users while allowing advanced users to create complex workflows that encapsulate simulation setup, execution, and data analysis in a single script. All relevant simulation parameters are encoded within the workflow, ensuring reproducible simulations. MoSDeF-GOMC's capabilities are illustrated through a number of examples, including prediction of the adsorption isotherm for CO
    MeSH term(s) Workflow ; Monte Carlo Method ; Ecosystem ; Computer Simulation ; Software
    Language English
    Publishing date 2023-02-15
    Publishing country United States
    Document type Journal Article ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 190019-5
    ISSN 1549-960X ; 0095-2338
    ISSN (online) 1549-960X
    ISSN 0095-2338
    DOI 10.1021/acs.jcim.2c01498
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Aryl hydrocarbon receptor is a tumor promoter in

    Chaudhry, Kanita A / Jacobi, Justine J / Gillard, Bryan M / Karasik, Ellen / Martin, Jeffrey C / da Silva Fernandes, Tatiane / Hurley, Edward / Feltri, Maria Laura / Attwood, Kristopher M / Twist, Clare J / Smiraglia, Dominic J / Long, Mark D / Bianchi-Smiraglia, Anna

    iScience

    2023  Volume 26, Issue 11, Page(s) 108303

    Abstract: Neuroblastoma is the most common extracranial solid tumor in children. ...

    Abstract Neuroblastoma is the most common extracranial solid tumor in children.
    Language English
    Publishing date 2023-10-21
    Publishing country United States
    Document type Journal Article
    ISSN 2589-0042
    ISSN (online) 2589-0042
    DOI 10.1016/j.isci.2023.108303
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Young parents’ experiences of pregnancy and parenting during the COVID-19 pandemic

    Bettina Moltrecht / Louise J. Dalton / Jeffrey R. Hanna / Clare Law / Elizabeth Rapa

    BMC Public Health, Vol 22, Iss 1, Pp 1-

    a qualitative study in the United Kingdom

    2022  Volume 12

    Abstract: Abstract Young parents (aged 16–24 years) in the perinatal period are at an increased risk of poor mental health especially during the COVID-19 pandemic, due to multiple risk factors including social and economic instability. COVID-19 related ... ...

    Abstract Abstract Young parents (aged 16–24 years) in the perinatal period are at an increased risk of poor mental health especially during the COVID-19 pandemic, due to multiple risk factors including social and economic instability. COVID-19 related restrictions had profound implications for the delivery of perinatal care services and other support structures for young parents. Investigating young parents’ experiences during the pandemic, including their perceived challenges and needs, is important to inform good practice and provide appropriate support for young parents. Qualitative interviews were conducted with young parents (n = 21) during the COVID-19 pandemic in the United Kingdom from February – May 2021. Data were analysed using thematic analysis. Three key themes were identified to describe parents’ experiences during the COVID-19 pandemic. Parents reported specific COVID-19 related anxieties and stressors, including worries around contracting the virus and increased feelings of distress due to uncertainty created by the implications of the pandemic. Parents described feeling alone both at home and during antenatal appointments and highlighted the absence of social support as a major area of concern. Parents also felt their perinatal care had been disrupted by the pandemic and experienced difficulties accessing care online or over the phone. This study highlights the potential impact of the COVID-19 pandemic on young parents, including their mental wellbeing and the perinatal support they were able to access. Insights from this study can inform the support and services offered to families going forward. Specifically, the findings emphasise the importance of (a) supporting both parents during perinatal appointments, (b) providing parents with mental health support early on and (c) finding ways to facilitate communication pathways between professionals and parents.
    Keywords Young parents ; COVID-19 ; Perinatal ; Remote care ; Mental health ; Public aspects of medicine ; RA1-1270
    Subject code 360
    Language English
    Publishing date 2022-03-01T00:00:00Z
    Publisher BMC
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Challenges and opportunities for perinatal health services in the COVID-19 pandemic: a qualitative study with perinatal healthcare professionals.

    Moltrecht, Bettina / de Cassan, Simone / Rapa, Elizabeth / Hanna, Jeffrey R / Law, Clare / Dalton, Louise J

    BMC health services research

    2022  Volume 22, Issue 1, Page(s) 1026

    Abstract: Background: Perinatal healthcare professionals (PHCPs) provide essential support to all parents in the perinatal period, including young parents aged 16-24, who are at an increased risk of morbidity and mortality. Little is known about the impact of ... ...

    Abstract Background: Perinatal healthcare professionals (PHCPs) provide essential support to all parents in the perinatal period, including young parents aged 16-24, who are at an increased risk of morbidity and mortality. Little is known about the impact of COVID-19 restrictions on the provision of perinatal services, and on perinatal healthcare professionals, caring for young parents in the UK.
    Methods: A UK based qualitative study using semi-structured interviews with perinatal healthcare professionals (n = 17). Data were analysed using thematic analysis.
    Results: Two themes were identified describing perinatal healthcare professionals' perceptions of providing care to young parents during the pandemic. Perinatal healthcare professionals perceived that young parents' needs were amplified by the pandemic and that pandemic-related changes to the service, such as the use of telemedicine to replace face-to-face interactions, did not manage to successfully mitigate the increased feelings of anxiety and isolation experienced by young parents. Concerns were raised by perinatal healthcare professionals that these changes reduced young parent's access to vital support for themselves and their child and may contribute to exacerbating pre-existing inequalities.
    Conclusions: This study provides insight into the impact of the COVID-19 pandemic on the provision of perinatal care to young parents. Perinatal mental health professionals felt these negative impacts could be overcome by using a blended approach of technology and face-to-face interactions allowing regular contact with young parents and facilitating the exchange of vital information, while maintaining access to opportunities for social interactions with other parents. Findings from this study could be used to future-proof services against further COVID-19 restrictions.
    MeSH term(s) COVID-19/epidemiology ; Delivery of Health Care ; Female ; Health Personnel/psychology ; Humans ; Pandemics ; Perinatal Care ; Pregnancy ; Qualitative Research
    Language English
    Publishing date 2022-08-12
    Publishing country England
    Document type Journal Article
    ZDB-ID 2050434-2
    ISSN 1472-6963 ; 1472-6963
    ISSN (online) 1472-6963
    ISSN 1472-6963
    DOI 10.1186/s12913-022-08427-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Young parents' experiences of pregnancy and parenting during the COVID-19 pandemic: a qualitative study in the United Kingdom.

    Moltrecht, Bettina / Dalton, Louise J / Hanna, Jeffrey R / Law, Clare / Rapa, Elizabeth

    BMC public health

    2022  Volume 22, Issue 1, Page(s) 523

    Abstract: Young parents (aged 16-24 years) in the perinatal period are at an increased risk of poor mental health especially during the COVID-19 pandemic, due to multiple risk factors including social and economic instability. COVID-19 related restrictions had ... ...

    Abstract Young parents (aged 16-24 years) in the perinatal period are at an increased risk of poor mental health especially during the COVID-19 pandemic, due to multiple risk factors including social and economic instability. COVID-19 related restrictions had profound implications for the delivery of perinatal care services and other support structures for young parents. Investigating young parents' experiences during the pandemic, including their perceived challenges and needs, is important to inform good practice and provide appropriate support for young parents.Qualitative interviews were conducted with young parents (n = 21) during the COVID-19 pandemic in the United Kingdom from February - May 2021. Data were analysed using thematic analysis.Three key themes were identified to describe parents' experiences during the COVID-19 pandemic. Parents reported specific COVID-19 related anxieties and stressors, including worries around contracting the virus and increased feelings of distress due to uncertainty created by the implications of the pandemic. Parents described feeling alone both at home and during antenatal appointments and highlighted the absence of social support as a major area of concern. Parents also felt their perinatal care had been disrupted by the pandemic and experienced difficulties accessing care online or over the phone.This study highlights the potential impact of the COVID-19 pandemic on young parents, including their mental wellbeing and the perinatal support they were able to access. Insights from this study can inform the support and services offered to families going forward. Specifically, the findings emphasise the importance of (a) supporting both parents during perinatal appointments, (b) providing parents with mental health support early on and (c) finding ways to facilitate communication pathways between professionals and parents.
    MeSH term(s) Adolescent ; Adult ; COVID-19/epidemiology ; Female ; Humans ; Pandemics ; Parenting ; Parents/psychology ; Pregnancy ; United Kingdom/epidemiology ; Young Adult
    Language English
    Publishing date 2022-03-17
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2041338-5
    ISSN 1471-2458 ; 1471-2458
    ISSN (online) 1471-2458
    ISSN 1471-2458
    DOI 10.1186/s12889-022-12892-9
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Comparing methods to classify admitted patients with SARS-CoV-2 as admitted for COVID-19 versus with incidental SARS-CoV-2: A cohort study.

    Hohl, Corinne M / Cragg, Amber / Purssel, Elizabeth / McAlister, Finlay A / Ting, Daniel K / Scheuermeyer, Frank / Stachura, Maja / Grant, Lars / Taylor, John / Kanu, Josephine / Hau, Jeffrey P / Cheng, Ivy / Atzema, Clare L / Bola, Rajan / Morrison, Laurie J / Landes, Megan / Perry, Jeffrey J / Rosychuk, Rhonda J

    PloS one

    2023  Volume 18, Issue 9, Page(s) e0291580

    Abstract: Introduction: Not all patients with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection develop symptomatic coronavirus disease 2019 (COVID-19), making it challenging to assess the burden of COVID-19-related hospitalizations and ... ...

    Abstract Introduction: Not all patients with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection develop symptomatic coronavirus disease 2019 (COVID-19), making it challenging to assess the burden of COVID-19-related hospitalizations and mortality. We aimed to determine the proportion, resource utilization, and outcomes of SARS-CoV-2 positive patients admitted for COVID-19, and assess the impact of using the Center for Disease Control's (CDC) discharge diagnosis-based algorithm and the Massachusetts state department's drug administration-based classification system on identifying admissions for COVID-19.
    Methods: In this retrospective cohort study, we enrolled consecutive SARS-CoV-2 positive patients admitted to one of five hospitals in British Columbia between December 19, 2021 and May 31,2022. We completed medical record reviews, and classified hospitalizations as being primarily for COVID-19 or with incidental SARS-CoV-2 infection. We applied the CDC algorithm and the Massachusetts classification to estimate the difference in hospital days, intensive care unit (ICU) days and in-hospital mortality and calculated sensitivity and specificity.
    Results: Of 42,505 Emergency Department patients, 1,651 were admitted and tested positive for SARS-CoV-2, with 858 (52.0%, 95% CI 49.6-54.4) admitted for COVID-19. Patients hospitalized for COVID-19 required ICU admission (14.0% versus 8.2%, p<0.001) and died (12.6% versus 6.4%, p<0.001) more frequently compared with patients with incidental SARS-CoV-2. Compared to case classification by clinicians, the CDC algorithm had a sensitivity of 82.9% (711/858, 95% CI 80.3%, 85.4%) and specificity of 98.1% (778/793, 95% CI 97.2%, 99.1%) for COVID-19-related admissions and underestimated COVID-19 attributable hospital days. The Massachusetts classification had a sensitivity of 60.5% (519/858, 95% CI 57.2%, 63.8%) and specificity of 78.6% (623/793, 95% CI 75.7%, 81.4%) for COVID-19-related admissions, underestimating total number of hospital and ICU bed days while overestimating COVID-19-related intubations, ICU admissions, and deaths.
    Conclusion: Half of SARS-CoV-2 hospitalizations were for COVID-19 during the Omicron wave. The CDC algorithm was more specific and sensitive than the Massachusetts classification, but underestimated the burden of COVID-19 admissions.
    Trial registration: Clinicaltrials.gov, NCT04702945.
    MeSH term(s) Humans ; SARS-CoV-2 ; COVID-19/diagnosis ; COVID-19/therapy ; Cohort Studies ; Retrospective Studies ; Hospitalization
    Language English
    Publishing date 2023-09-26
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0291580
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Challenges and opportunities for perinatal health services in the COVID-19 pandemic

    Bettina Moltrecht / Simone de Cassan / Elizabeth Rapa / Jeffrey R. Hanna / Clare Law / Louise J. Dalton

    BMC Health Services Research, Vol 22, Iss 1, Pp 1-

    a qualitative study with perinatal healthcare professionals

    2022  Volume 11

    Abstract: Abstract Background Perinatal healthcare professionals (PHCPs) provide essential support to all parents in the perinatal period, including young parents aged 16–24, who are at an increased risk of morbidity and mortality. Little is known about the impact ...

    Abstract Abstract Background Perinatal healthcare professionals (PHCPs) provide essential support to all parents in the perinatal period, including young parents aged 16–24, who are at an increased risk of morbidity and mortality. Little is known about the impact of COVID-19 restrictions on the provision of perinatal services, and on perinatal healthcare professionals, caring for young parents in the UK. Methods A UK based qualitative study using semi-structured interviews with perinatal healthcare professionals (n = 17). Data were analysed using thematic analysis. Results Two themes were identified describing perinatal healthcare professionals’ perceptions of providing care to young parents during the pandemic. Perinatal healthcare professionals perceived that young parents’ needs were amplified by the pandemic and that pandemic-related changes to the service, such as the use of telemedicine to replace face-to-face interactions, did not manage to successfully mitigate the increased feelings of anxiety and isolation experienced by young parents. Concerns were raised by perinatal healthcare professionals that these changes reduced young parent’s access to vital support for themselves and their child and may contribute to exacerbating pre-existing inequalities. Conclusions This study provides insight into the impact of the COVID-19 pandemic on the provision of perinatal care to young parents. Perinatal mental health professionals felt these negative impacts could be overcome by using a blended approach of technology and face-to-face interactions allowing regular contact with young parents and facilitating the exchange of vital information, while maintaining access to opportunities for social interactions with other parents. Findings from this study could be used to future-proof services against further COVID-19 restrictions.
    Keywords Young parents ; COVID-19 ; Perinatal ; Healthcare professionals ; Public aspects of medicine ; RA1-1270
    Subject code 360
    Language English
    Publishing date 2022-08-01T00:00:00Z
    Publisher BMC
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: Targeting ion channels for drug discovery.

    Clare, Jeffrey J

    Discovery medicine

    2010  Volume 9, Issue 46, Page(s) 253–260

    Abstract: Ion channels are important therapeutic targets which are modulated by a range of currently prescribed drugs. Most of these were developed empirically by traditional pharmacology without knowing their precise target, and the discovery of novel ion channel ...

    Abstract Ion channels are important therapeutic targets which are modulated by a range of currently prescribed drugs. Most of these were developed empirically by traditional pharmacology without knowing their precise target, and the discovery of novel ion channel drugs by high-throughput molecular approaches has proven challenging. A key stumbling-block has been the development of biologically relevant assays with the capacity for randomly screening sizeable compound libraries. While various screening formats exist, e.g., using ion- or voltage-sensitive fluorescent dyes, these lack the precision, temporal resolution, and voltage control normally required for monitoring channel modulation. On the other hand, traditional electrophysiology is too slow, technically demanding, and labor intensive for primary screening. Recently, these limitations have been addressed by the development of automated electrophysiology instruments. While retaining much of the fidelity and precision of electrophysiology, these systems also address the main disadvantages by using automation to increase throughput and "de-skill" the process. Though the capacities currently attainable are not yet compatible with primary screening, these instruments are nevertheless having a significant impact on drug discovery. By providing high quality, information-rich assays for medium-throughput secondary screening, these instruments bridge significant gaps that, historically, have hampered the early ion channel drug discovery pipeline.
    MeSH term(s) Animals ; Drug Discovery ; Electrophysiological Phenomena ; High-Throughput Screening Assays ; Humans ; Ion Channels/drug effects ; Ion Channels/physiology
    Chemical Substances Ion Channels
    Language English
    Publishing date 2010-03
    Publishing country United States
    Document type Journal Article ; Review
    ISSN 1944-7930
    ISSN (online) 1944-7930
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Targeting voltage-gated sodium channels for pain therapy.

    Clare, Jeffrey J

    Expert opinion on investigational drugs

    2010  Volume 19, Issue 1, Page(s) 45–62

    Abstract: Drugs inhibiting voltage-gated sodium channels have long been used as analgesics, beginning with the use of local anaesthetics for sensory blockade and then with the discovery that Nav-blocking anticonvulsants also have benefit for pain therapy. These ... ...

    Abstract Drugs inhibiting voltage-gated sodium channels have long been used as analgesics, beginning with the use of local anaesthetics for sensory blockade and then with the discovery that Nav-blocking anticonvulsants also have benefit for pain therapy. These drugs were discovered without knowledge of their molecular target, using traditional pharmacological methods, and their clinical utility is limited by relatively narrow therapeutic windows. Until recently, attempts to develop improved inhibitors using modern molecular-targeted screening approaches have met with limited success. However, in the last few years there has been renewed activity following the discovery of human Nav1.7 mutations that cause striking insensitivity to pain. Together with recent advances in the technologies required to prosecute ion channels as drug targets, this has led to significant progress being made. This article reviews these developments and summarises current findings with these emerging new Nav inhibitors, highlighting some of the unanswered questions and the challenges that remain before they can be developed for clinical use.
    MeSH term(s) Amino Acid Sequence ; Analgesics, Non-Narcotic/administration & dosage ; Analgesics, Non-Narcotic/pharmacology ; Analgesics, Non-Narcotic/therapeutic use ; Animals ; Binding Sites ; Drug Design ; Humans ; Molecular Sequence Data ; NAV1.7 Voltage-Gated Sodium Channel ; Nociceptors/metabolism ; Pain/drug therapy ; Pain/metabolism ; Sodium Channel Blockers/administration & dosage ; Sodium Channel Blockers/pharmacology ; Sodium Channel Blockers/therapeutic use ; Sodium Channels/genetics ; Sodium Channels/metabolism
    Chemical Substances Analgesics, Non-Narcotic ; NAV1.7 Voltage-Gated Sodium Channel ; SCN9A protein, human ; Sodium Channel Blockers ; Sodium Channels
    Language English
    Publishing date 2010-01
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 1182884-5
    ISSN 1744-7658 ; 0967-8298 ; 1354-3784
    ISSN (online) 1744-7658
    ISSN 0967-8298 ; 1354-3784
    DOI 10.1517/13543780903435340
    Database MEDical Literature Analysis and Retrieval System OnLINE

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