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  1. Article ; Online: Spaceflight impacts xyloglucan oligosaccharide abundance in Arabidopsis thaliana root cell walls.

    Diao, Xizheng / Haveman, Natasha / Califar, Brandon / Dong, Xiaoru / Prentice, Boone / Paul, Anna-Lisa / Ferl, Robert J

    Life sciences in space research

    2024  Volume 41, Page(s) 110–118

    Abstract: Over the course of more than a decade, space biology investigations have consistently indicated that cell wall remodeling occurs in a variety of spaceflight-grown plants. Here, we describe a mass spectrometric method to study the fundamental composition ... ...

    Abstract Over the course of more than a decade, space biology investigations have consistently indicated that cell wall remodeling occurs in a variety of spaceflight-grown plants. Here, we describe a mass spectrometric method to study the fundamental composition of xyloglucan, the most abundant hemicellulose in dicot cell walls, in space-grown plants. Four representative Arabidopsis root samples, from a previously conducted spaceflight experiment - Advanced Plant EXperiment - 04 (APEX-04), were used to investigate changes in xyloglucan oligosaccharides abundances in spaceflight-grown plants compared to ground controls. In situ localized enzymatic digestions and surface sampling mass spectrometry analysis provided spatial resolution of the changes in xyloglucan oligosaccharides abundances. Overall, the results showed that oligosaccharide XXLG/XLXG and XXFG branching patterns were more abundant in the lateral roots of spaceflight-grown plants, while XXXG, XLFG, and XLFG/XLFG were more abundant in the lateral roots of ground control plants. In the primary roots, XXFG had a higher abundance in ground controls than in spaceflight plants. This methodology of analyzing the basic components of the cell wall in this paper highlights two important findings. First, that are differences in the composition of xyloglucan oligosaccharides in spaceflight root cell walls compared to ground controls and, second, most of these differences are observed in the lateral roots. Thus, the methodology described in this paper provides insights into spaceflight cell wall modifications for future investigations.
    MeSH term(s) Arabidopsis/metabolism ; Cell Wall/metabolism ; Glucans/analysis ; Glucans/metabolism ; Space Flight ; Xylans/analysis ; Xylans/metabolism ; Plant Roots/metabolism ; Oligosaccharides/analysis ; Oligosaccharides/metabolism ; Mass Spectrometry
    Chemical Substances xyloglucan (37294-28-3) ; Glucans ; Xylans ; Oligosaccharides
    Language English
    Publishing date 2024-02-16
    Publishing country Netherlands
    Document type Journal Article
    ISSN 2214-5532
    ISSN (online) 2214-5532
    DOI 10.1016/j.lssr.2024.02.004
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Advancing the automation of plant nucleic acid extraction for rapid diagnosis of plant diseases in space.

    Haveman, Natasha J / Schuerger, Andrew C / Yu, Pei-Ling / Brown, Mark / Doebler, Robert / Paul, Anna-Lisa / Ferl, Robert J

    Frontiers in plant science

    2023  Volume 14, Page(s) 1194753

    Abstract: Human space exploration missions will continue the development of sustainable plant cultivation in what are obviously novel habitat settings. Effective pathology mitigation strategies are needed to cope with plant disease outbreaks in any space-based ... ...

    Abstract Human space exploration missions will continue the development of sustainable plant cultivation in what are obviously novel habitat settings. Effective pathology mitigation strategies are needed to cope with plant disease outbreaks in any space-based plant growth system. However, few technologies currently exist for space-based diagnosis of plant pathogens. Therefore, we developed a method of extracting plant nucleic acid that will facilitate the rapid diagnosis of plant diseases for future spaceflight applications. The microHomogenizer
    Language English
    Publishing date 2023-06-14
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2613694-6
    ISSN 1664-462X
    ISSN 1664-462X
    DOI 10.3389/fpls.2023.1194753
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Epigenomic Regulators

    Paul, Anna-Lisa / Haveman, Natasha / Califar, Brandon / Ferl, Robert J

    Frontiers in plant science

    2021  Volume 12, Page(s) 691790

    Abstract: Background: ...

    Abstract Background:
    Language English
    Publishing date 2021-09-13
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2613694-6
    ISSN 1664-462X
    ISSN 1664-462X
    DOI 10.3389/fpls.2021.691790
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: Integrative transcriptomics and proteomics profiling of

    Olanrewaju, Gbolaga O / Haveman, Natasha J / Naldrett, Michael J / Paul, Anna-Lisa / Ferl, Robert J / Wyatt, Sarah E

    Frontiers in plant science

    2023  Volume 14, Page(s) 1260429

    Abstract: Spaceflight presents a unique environment with complex stressors, including microgravity and radiation, that can influence plant physiology at molecular levels. Combining transcriptomics and proteomics approaches, this research gives insights into the ... ...

    Abstract Spaceflight presents a unique environment with complex stressors, including microgravity and radiation, that can influence plant physiology at molecular levels. Combining transcriptomics and proteomics approaches, this research gives insights into the coordination of transcriptome and proteome in Arabidopsis' molecular and physiological responses to Spaceflight environmental stress. Arabidopsis seedlings were germinated and grown in microgravity (µ
    Language English
    Publishing date 2023-11-27
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2613694-6
    ISSN 1664-462X
    ISSN 1664-462X
    DOI 10.3389/fpls.2023.1260429
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Transcriptomic dynamics in the transition from ground to space are revealed by Virgin Galactic human-tended suborbital spaceflight.

    Ferl, Robert J / Zhou, Mingqi / Strickland, Hunter F / Haveman, Natasha J / Callaham, Jordan B / Bandla, Sirisha / Ambriz, Daniel / Paul, Anna-Lisa

    NPJ microgravity

    2023  Volume 9, Issue 1, Page(s) 95

    Abstract: The Virgin Galactic Unity 22 mission conducted the first astronaut-manipulated suborbital spaceflight experiment. The experiment examined the operationalization of Kennedy Space Center Fixation Tubes (KFTs) as a generalizable approach to preserving ... ...

    Abstract The Virgin Galactic Unity 22 mission conducted the first astronaut-manipulated suborbital spaceflight experiment. The experiment examined the operationalization of Kennedy Space Center Fixation Tubes (KFTs) as a generalizable approach to preserving biology at various phases of suborbital flight. The biology chosen for this experiment was Arabidopsis thaliana, ecotype Col-0, because of the plant history of spaceflight experimentation within KFTs and wealth of comparative data from orbital experiments. KFTs were deployed as a wearable device, a leg pouch attached to the astronaut, which proved to be operationally effective during the course of the flight. Data from the inflight samples indicated that the microgravity period of the flight elicited the strongest transcriptomic responses as measured by the number of genes showing differential expression. Genes related to reactive oxygen species and stress, as well as genes associated with orbital spaceflight, were highly represented among the suborbital gene expression profile. In addition, gene families largely unaffected in orbital spaceflight were diversely regulated in suborbital flight, including stress-responsive transcription factors. The human-tended suborbital experiment demonstrated the operational effectiveness of the KFTs in suborbital flight and suggests that rapid transcriptomic responses are a part of the temporal dynamics at the beginning of physiological adaptation to spaceflight.
    Language English
    Publishing date 2023-12-20
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2823626-9
    ISSN 2373-8065
    ISSN 2373-8065
    DOI 10.1038/s41526-023-00340-w
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Phenotypic characterization of an Arabidopsis T-DNA insertion line SALK_063500.

    Sng, Natasha J / Paul, Anna-Lisa / Ferl, Robert J

    Data in brief

    2018  Volume 18, Page(s) 913–919

    Abstract: In this article we report the identification of a homozygous lethal T-DNA (transfer DNA) line within the coding region of the At1G05290 gene in the ... ...

    Abstract In this article we report the identification of a homozygous lethal T-DNA (transfer DNA) line within the coding region of the At1G05290 gene in the genome
    Language English
    Publishing date 2018-03-26
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2786545-9
    ISSN 2352-3409
    ISSN 2352-3409
    DOI 10.1016/j.dib.2018.03.107
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: The effect of spaceflight on the gravity-sensing auxin gradient of roots: GFP reporter gene microscopy on orbit.

    Ferl, Robert J / Paul, Anna-Lisa

    NPJ microgravity

    2016  Volume 2, Page(s) 15023

    Abstract: Our primary aim was to determine whether gravity has a direct role in establishing the auxin-mediated gravity-sensing system in primary roots. Major plant architectures have long been thought to be guided by gravity, including the directional growth of ... ...

    Abstract Our primary aim was to determine whether gravity has a direct role in establishing the auxin-mediated gravity-sensing system in primary roots. Major plant architectures have long been thought to be guided by gravity, including the directional growth of the primary root via auxin gradients that are then disturbed when roots deviate from the vertical as a gravity sensor. However, experiments on the International Space Station (ISS) now allow physical clarity with regard to any assumptions regarding the role of gravity in establishing fundamental root auxin distributions. We examined the spaceflight green fluorescent protein (GFP)-reporter gene expression in roots of transgenic lines of
    Language English
    Publishing date 2016-01-21
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2823626-9
    ISSN 2373-8065
    ISSN 2373-8065
    DOI 10.1038/npjmgrav.2015.23
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: In Memoriam: Wayne Lowell Nicholson, March 26, 1958-June 8, 2023.

    Foster, Jamie S / Henkin, Tina M / Romeo, Tony / Schuerger, Andrew C / Setlow, Peter / Ferl, Robert J / Rice, Kelly C / Triplett, Eric W / Fajardo-Cavazos, Patricia

    Astrobiology

    2023  Volume 24, Issue 3, Page(s) 227–229

    Language English
    Publishing date 2023-12-27
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2047736-3
    ISSN 1557-8070 ; 1531-1074
    ISSN (online) 1557-8070
    ISSN 1531-1074
    DOI 10.1089/ast.2023.0100
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Epigenomic Regulators Elongator Complex Subunit 2 and Methyltransferase 1 Differentially Condition the Spaceflight Response in Arabidopsis

    Anna-Lisa Paul / Natasha Haveman / Brandon Califar / Robert J. Ferl

    Frontiers in Plant Science, Vol

    2021  Volume 12

    Abstract: Background: Plants subjected to the novel environment of spaceflight show transcriptomic changes that resemble aspects of several terrestrial abiotic stress responses. Under investigation here is whether epigenetic modulations, similar to those that ... ...

    Abstract Background: Plants subjected to the novel environment of spaceflight show transcriptomic changes that resemble aspects of several terrestrial abiotic stress responses. Under investigation here is whether epigenetic modulations, similar to those that occur in terrestrial stress responses, have a functional role in spaceflight physiological adaptation. The Advanced Plant Experiment-04 – Epigenetic Expression experiment examined the role of cytosine methylation in spaceflight adaptation. The experiment was conducted onboard the International Space Station, and evaluated the spaceflight-altered, genome-wide methylation profiles of two methylation-regulating gene mutants [methyltransferase 1 (met1-7) and elongator complex subunit 2 (elp2-5)] along with a wild-type Col-0 control.Results: The elp2-5 plants suffered in their physiological adaptation to spaceflight in that their roots failed to extend away from the seed and the overall development of the plants was greatly impaired in space. The met1-7 plants suffered less, with their morphology affected by spaceflight in a manner similar to that of the Col-0 controls. The differentially expressed genes (DEGs) in spaceflight were dramatically different in the elp2-5 and met1-7 plants compared to Col-0, indicating that the disruptions in these mutants resulted in a reprogramming of their spaceflight responses, especially in elp2-5. Many of the genes comprising the spaceflight transcriptome of each genotype were differentially methylated in spaceflight. In Col-0 the majority of the DEGs were representative of the now familiar spaceflight response, which includes genes associated with cell wall remodeling, pathogen responses and ROS signaling. However, the spaceflight transcriptomes of met1-7 and elp2-5 each presented patterns of DEGs that are almost completely different than Col-0, and to each other. Further, the DEGs of the mutant genotypes suggest a more severe spaceflight stress response in the mutants, particularly in elp2-5.Conclusion: Arabidopsis physiological ...
    Keywords spaceflight adaptation ; DNA methylation ; epigenetic ; space biology ; microgravity ; elongator complex subunit 2 ; Plant culture ; SB1-1110
    Subject code 580
    Language English
    Publishing date 2021-09-01T00:00:00Z
    Publisher Frontiers Media S.A.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article: Comparing RNA-Seq and microarray gene expression data in two zones of the

    Krishnamurthy, Aparna / Ferl, Robert J / Paul, Anna-Lisa

    Applications in plant sciences

    2018  Volume 6, Issue 11, Page(s) e01197

    Abstract: Premise of the study: The root apex is an important region involved in environmental sensing, but comprises a very small part of the root. Obtaining root apex transcriptomes is therefore challenging when the samples are limited. The feasibility of using ...

    Abstract Premise of the study: The root apex is an important region involved in environmental sensing, but comprises a very small part of the root. Obtaining root apex transcriptomes is therefore challenging when the samples are limited. The feasibility of using tiny root sections for transcriptome analysis was examined, comparing RNA sequencing (RNA-Seq) to microarrays in characterizing genes that are relevant to spaceflight.
    Methods: Arabidopsis thaliana
    Results: Both microarrays and RNA-Seq proved applicable to the small samples. A total of 4180 genes were differentially expressed (with fold changes of 2 or greater) between Zone 1 and Zone 2. In addition, 771 unique genes and 19 novel transcriptionally active regions were identified by RNA-Seq that were not detected in microarrays. However, microarrays detected spaceflight-relevant genes that were missed in RNA-Seq.
    Discussion: Single root tip subsections can be used for transcriptome analysis using either RNA-Seq or microarrays. Both RNA-Seq and microarrays provided novel information. These data suggest that techniques for dealing with small, rare samples from spaceflight can be further enhanced, and that RNA-Seq may miss some spaceflight-relevant changes in gene expression.
    Language English
    Publishing date 2018-11-14
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2699923-7
    ISSN 2168-0450
    ISSN 2168-0450
    DOI 10.1002/aps3.1197
    Database MEDical Literature Analysis and Retrieval System OnLINE

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