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  1. Article ; Online: Leber's hereditary optic neuropathy: Current approaches and future perspectives on Mesenchymal stem cell-mediated rescue.

    Mohana Devi, Subramaniam / Abishek Kumar, B / Mahalaxmi, Iyer / Balachandar, Vellingiri

    Mitochondrion

    2021  Volume 60, Page(s) 201–218

    Abstract: Leber's Hereditary Optic Neuropathy (LHON) is an inherited optic nerve disorder. It is a mitochondrially inherited disease due to point mutation in the MT-ND1, MT-ND4, and MT-ND6 genes of mitochondrial DNA (mtDNA) coding for complex I subunit proteins. ... ...

    Abstract Leber's Hereditary Optic Neuropathy (LHON) is an inherited optic nerve disorder. It is a mitochondrially inherited disease due to point mutation in the MT-ND1, MT-ND4, and MT-ND6 genes of mitochondrial DNA (mtDNA) coding for complex I subunit proteins. These mutations affect the assembly of the mitochondrial complex I and hence the electron transport chain leading to mitochondrial dysfunction and oxidative damage. Optic nerve cells like retinal ganglion cells (RGCs) are more sensitive to mitochondrial loss and oxidative damage which results in the progressive degeneration of RGCs at the axonal region of the optic nerve leading to bilateral vision loss. Currently, gene therapy using Adeno-associated viral vector (AAV) is widely studied for the therapeutics application in LHON. Our review highlights the application of cell-based therapy for LHON. Mesenchymal stem cells (MSCs) are known to rescue cells from the pre-apoptotic stage by transferring healthy mitochondria through tunneling nanotubes (TNT) for cellular oxidative function. Empowering the transfer of healthy mitochondria using MSCs may replace the mitochondria with pathogenic mutation and possibly benefit the cells from progressive damage. This review discusses the ongoing research in LHON and mitochondrial transfer mechanisms to explore its scope in inherited optic neuropathy.
    MeSH term(s) Humans ; Mesenchymal Stem Cell Transplantation ; Optic Atrophy, Hereditary, Leber/therapy
    Language English
    Publishing date 2021-08-26
    Publishing country Netherlands
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 2056923-3
    ISSN 1872-8278 ; 1567-7249
    ISSN (online) 1872-8278
    ISSN 1567-7249
    DOI 10.1016/j.mito.2021.08.013
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Targeting Tumour-Associated Fibroblasts in Cancers.

    Shah, Kairav / Mallik, Sanchari Basu / Gupta, Praveer / Iyer, Abishek

    Frontiers in oncology

    2022  Volume 12, Page(s) 908156

    Abstract: Tumours develop within complex tissue environments consisting of aberrant oncogenic cancer cells, diverse innate and adaptive immune cells, along with structural stromal cells, extracellular matrix and vascular networks, and many other cellular and non- ... ...

    Abstract Tumours develop within complex tissue environments consisting of aberrant oncogenic cancer cells, diverse innate and adaptive immune cells, along with structural stromal cells, extracellular matrix and vascular networks, and many other cellular and non-cellular soluble constituents. Understanding the heterogeneity and the complex interplay between these cells remains a key barrier in treating tumours and cancers. The immune status of the pre-tumour and tumour milieu can dictate if the tumour microenvironment (TME) supports either a pro-malignancy or an anti-malignancy phenotype. Identification of the factors and cell types that regulate the dysfunction of the TME is crucial in order to understand and modulate the immune status of tumours. Among these cell types, tumour-associated fibroblasts are emerging as a major component of the TME that is often correlated with poor prognosis and therapy resistance, including immunotherapies. Thus, a deeper understanding of the complex roles of tumour-associated fibroblasts in regulating tumour immunity and cancer therapy could provide new insight into targeting the TME in various human cancers. In this review, we summarize recent studies investigating the role of immune and key stromal cells in regulating the immune status of the TME and discuss the therapeutic potential of targeting stromal cells, especially tumour-associated fibroblasts, within the TME as an adjuvant therapy to sensitize immunosuppressive tumours and prevent cancer progression, chemo-resistance and metastasis.
    Language English
    Publishing date 2022-06-22
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2649216-7
    ISSN 2234-943X
    ISSN 2234-943X
    DOI 10.3389/fonc.2022.908156
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Tuning the Structural and Magnetic Properties in Mixed Cation Mn

    Cheng, Matthew / Iyer, Abishek K / Zhou, Xiuquan / Tyner, Alexander / Liu, Yukun / Shehzad, M Arslan / Goswami, Pallab / Chung, Duck Young / Kanatzidis, Mercouri G / Dravid, Vinayak P

    Inorganic chemistry

    2022  Volume 61, Issue 35, Page(s) 13719–13727

    Abstract: The metal thiophosphates (MTP), ...

    Abstract The metal thiophosphates (MTP),
    Language English
    Publishing date 2022-08-23
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1484438-2
    ISSN 1520-510X ; 0020-1669
    ISSN (online) 1520-510X
    ISSN 0020-1669
    DOI 10.1021/acs.inorgchem.2c01116
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Heteroanionic Control of Exemplary Second-Harmonic Generation and Phase Matchability in 1D LiAsS

    Oxley, Benjamin M / Cho, Jeong Bin / Iyer, Abishek K / Waters, Michael J / He, Jingyang / Smith, Nathan C / Wolverton, Chris / Gopalan, Venkatraman / Rondinelli, James M / Jang, Joon I / Kanatzidis, Mercouri G

    Journal of the American Chemical Society

    2022  Volume 144, Issue 30, Page(s) 13903–13912

    Abstract: The isostructural heteroanionic compounds β- ... ...

    Abstract The isostructural heteroanionic compounds β-LiAsS
    Language English
    Publishing date 2022-07-22
    Publishing country United States
    Document type Journal Article
    ZDB-ID 3155-0
    ISSN 1520-5126 ; 0002-7863
    ISSN (online) 1520-5126
    ISSN 0002-7863
    DOI 10.1021/jacs.2c05447
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: P

    Chica, Daniel G / Iyer, Abishek K / Cheng, Matthew / Ryan, Kevin M / Krantz, Patrick / Laing, Craig / Dos Reis, Roberto / Chandrasekhar, Venkat / Dravid, Vinayak P / Kanatzidis, Mercouri G

    Inorganic chemistry

    2021  Volume 60, Issue 6, Page(s) 3502–3513

    Abstract: We report a reactive flux technique using the common reagent ... ...

    Abstract We report a reactive flux technique using the common reagent P
    Language English
    Publishing date 2021-02-26
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1484438-2
    ISSN 1520-510X ; 0020-1669
    ISSN (online) 1520-510X
    ISSN 0020-1669
    DOI 10.1021/acs.inorgchem.0c03577
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Mixed Metal Thiophosphate Fe

    Cheng, Matthew / Lee, Yea-Shine / Iyer, Abishek K / Chica, Daniel G / Qian, Eric K / Shehzad, Muhammad Arslan / Dos Reis, Roberto / Kanatzidis, Mercouri G / Dravid, Vinayak P

    Inorganic chemistry

    2021  Volume 60, Issue 22, Page(s) 17268–17275

    Abstract: Metal chalcophosphates, ... ...

    Abstract Metal chalcophosphates, M
    Language English
    Publishing date 2021-10-26
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1484438-2
    ISSN 1520-510X ; 0020-1669
    ISSN (online) 1520-510X
    ISSN 0020-1669
    DOI 10.1021/acs.inorgchem.1c02635
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Crystal Structures of Protein-Bound Cyclic Peptides.

    Malde, Alpeshkumar K / Hill, Timothy A / Iyer, Abishek / Fairlie, David P

    Chemical reviews

    2019  Volume 119, Issue 17, Page(s) 9861–9914

    Abstract: Cyclization is an important post-translational modification of peptides and proteins that confers key advantages such as protection from proteolytic degradation, altered solubility, membrane permeability, bioavailability, and especially restricted ... ...

    Abstract Cyclization is an important post-translational modification of peptides and proteins that confers key advantages such as protection from proteolytic degradation, altered solubility, membrane permeability, bioavailability, and especially restricted conformational freedom in water that allows the peptide backbone to adopt the major secondary structure elements found in proteins. Non-ribosomal synthesis in bacteria, fungi, and plants or synthetic chemistry can introduce unnatural amino acids and non-peptidic constraints that modify peptide backbones and side chains to fine-tune cyclic peptide structure. Structures can be potentially altered further upon binding to a protein in biological environments. Here we analyze three-dimensional crystal structures for 211 bioactive cyclic peptides bound to 65 different proteins. The protein-bound cyclic peptides were examined for similarities and differences in bonding modes, for main-chain and side-chain structure, and for the importance of polarity, hydrogen bonds, hydrophobic effects, and water molecules in interactions with proteins. Many protein-bound cyclic peptides show backbone structures like those (strands, sheets, turns, helices, loops, or distorted variations) found at protein-protein binding interfaces. However, the notion of macrocycles simply as privileged scaffolds that primarily project side-chain substituents for complementary interactions with proteins is dispelled here. Unlike small-molecule drugs, the cyclic peptides do not rely mainly upon hydrophobic and van der Waals interactions for protein binding; they also use their main chain and side chains to form polar contacts and hydrogen bonds with proteins. Compared to small-molecule ligands, cyclic peptides can bind across larger, polar, and water-exposed protein surface areas, making many more contacts that can increase affinity, selectivity, biological activity, and ligand-receptor residence time. Cyclic peptides have a greater capacity than small-molecule drugs to modulate protein-protein interfaces that involve large, shallow, dynamic, polar, and water-exposed protein surfaces.
    MeSH term(s) Animals ; Bacteria/chemistry ; Catalytic Domain ; Crystallography, X-Ray ; Humans ; Hydrogen Bonding ; Peptides, Cyclic/chemistry ; Peptides, Cyclic/metabolism ; Protein Binding ; Proteins/chemistry ; Proteins/metabolism ; Static Electricity
    Chemical Substances Peptides, Cyclic ; Proteins
    Language English
    Publishing date 2019-05-02
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 207949-5
    ISSN 1520-6890 ; 0009-2665
    ISSN (online) 1520-6890
    ISSN 0009-2665
    DOI 10.1021/acs.chemrev.8b00807
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: PAR2-Induced Tissue Factor Synthesis by Primary Cultures of Human Kidney Tubular Epithelial Cells Is Modified by Glucose Availability.

    Humphries, Tyrone L R / Shen, Kunyu / Iyer, Abishek / Johnson, David W / Gobe, Glenda C / Nikolic-Paterson, David / Fairlie, David P / Vesey, David A

    International journal of molecular sciences

    2021  Volume 22, Issue 14

    Abstract: Coagulopathies common to patients with diabetes and chronic kidney disease (CKD) are not fully understood. Fibrin deposits in the kidney suggest the local presence of clotting factors including tissue factor (TF). In this study, we investigated the ... ...

    Abstract Coagulopathies common to patients with diabetes and chronic kidney disease (CKD) are not fully understood. Fibrin deposits in the kidney suggest the local presence of clotting factors including tissue factor (TF). In this study, we investigated the effect of glucose availability on the synthesis of TF by cultured human kidney tubular epithelial cells (HTECs) in response to activation of protease-activated receptor 2 (PAR2). PAR2 activation by peptide 2f-LIGRLO-NH
    MeSH term(s) Epithelial Cells/drug effects ; Epithelial Cells/metabolism ; Gene Expression Regulation/drug effects ; Glucose/pharmacology ; Humans ; Kidney Tubules/drug effects ; Kidney Tubules/metabolism ; Receptor, PAR-2/genetics ; Receptor, PAR-2/metabolism ; Sweetening Agents/pharmacology ; Thromboplastin/metabolism
    Chemical Substances F2RL1 protein, human ; Receptor, PAR-2 ; Sweetening Agents ; Thromboplastin (9035-58-9) ; Glucose (IY9XDZ35W2)
    Language English
    Publishing date 2021-07-14
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2019364-6
    ISSN 1422-0067 ; 1422-0067 ; 1661-6596
    ISSN (online) 1422-0067
    ISSN 1422-0067 ; 1661-6596
    DOI 10.3390/ijms22147532
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Structure Tuning, Strong Second Harmonic Generation Response, and High Optical Stability of the Polar Semiconductors Na

    Iyer, Abishek K / Cho, Jeong Bin / Byun, Hye Ryung / Waters, Michael J / Hao, Shiqiang / Oxley, Benjamin M / Gopalan, Venkat / Wolverton, Christopher / Rondinelli, James M / Jang, Joon I / Kanatzidis, Mercouri G

    Journal of the American Chemical Society

    2021  Volume 143, Issue 43, Page(s) 18204–18215

    Abstract: The mixed cation compounds ... ...

    Abstract The mixed cation compounds Na
    Language English
    Publishing date 2021-10-19
    Publishing country United States
    Document type Journal Article
    ZDB-ID 3155-0
    ISSN 1520-5126 ; 0002-7863
    ISSN (online) 1520-5126
    ISSN 0002-7863
    DOI 10.1021/jacs.1c07993
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Can deep learning revolutionize clinical understanding and diagnosis of optic neuropathy?

    Mohana Devi Subramaniam / Abishek Kumar B / Ruth Bright Chirayath / Aswathy P Nair / Mahalaxmi Iyer / Balachandar Vellingiri

    Artificial Intelligence in the Life Sciences, Vol 1, Iss , Pp 100018- (2021)

    2021  

    Abstract: Artificial intelligence (AI) based on deep learning (DL) has sparked tremendous global interest in recent years. Deep Learning has been widely adopted in speech and image recognition, natural language processing which has an impact on healthcare. In the ... ...

    Abstract Artificial intelligence (AI) based on deep learning (DL) has sparked tremendous global interest in recent years. Deep Learning has been widely adopted in speech and image recognition, natural language processing which has an impact on healthcare. In the recent decade, the application of DL has exponentially grown in the field of Ophthalmology. The fundoscopy, slit lamp photography, optical coherence tomography (OCT), and magnetic resonance imaging (MRI) were employed for clinical examination of various ocular conditions. These data served as a perfect platform for the development of DL models in Ophthalmology. Currently, the application of DL in ocular disorders is majorly studied in Diabetic retinopathy (DR), age-related macular degeneration (AMD), macular oedema, retinopathy of prematurity (ROP), glaucoma, and cataract. In Ophthalmology, DL models are gradually expanding their scope in optic neuropathies. Glaucoma and optic neuritis are optic nerve disorders, where DL models are currently studied for clinical applications. For further expansion of DL application in inherited optic neuropathies, we discussed the recent observational studies revealing the pathophysiological changes at the optic nerve in Leber's hereditary optic neuropathy (LHON). LHON is an inherited optic neuropathy leading to bilateral loss of vision in early age groups. Hence for early management, further footsteps in the application of DL in LHON will benefit both ophthalmologists and patients. In this review, we discuss the recent advancements of AI in the Ophthalmology and prospective of applying DL models in LHON for clinical precision and timely diagnosis.
    Keywords Artificial intelligence ; Deep learning ; Ophthalmology ; Leber's hereditary optic neuropathy ; Diagnosis ; Science (General) ; Q1-390
    Subject code 610 ; 006
    Language English
    Publishing date 2021-12-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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