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Article: Thomas M. Smith on Virginia Commonwealth University's Patient Safety Fellowship. Interview by Michelle Horvath and Pamela Scarrow.

Smith, Thomas M

Journal for healthcare quality : official publication of the National Association for Healthcare Quality

2004 Volume 26, Issue 2, Page(s) 31–35

MeSH term(s)	Academic Medical Centers/organization & administration ; Benchmarking ; Fellowships and Scholarships ; Humans ; Medicaid ; Medical Errors/prevention & control ; Quality Assurance, Health Care ; Safety Management/organization & administration ; Virginia
Language	English
Publishing date	2004-01-01
Publishing country	United States
Document type	Interview
ZDB-ID	1472097-8
ISSN	1945-1474 ; 1062-2551
ISSN (online)	1945-1474
ISSN	1062-2551
DOI	10.1111/j.1945-1474.2004.tb00482.x
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Book ; Online: (Table 1) Late Pleistocene planktonic foraminifera of Hole 302-M0004C, supplementary data to: Eynaud, Frédérique; Cronin, Thomas M; Smith, Shannon A; Zaragosi, Sebastien; Mavel, J; Mary, Y; Mas, Virginie; Pujol, Claude (2009): Morphological variability of the planktonic foraminifer Neogloboquadrina pachyderma from ACEX cores: implications for late Pleistocene circulation in the Arctic Ocean. Micropaleontology, 55(2-3), 101-116

Eynaud, Frédérique / Cronin, Thomas M / Mary, Y / Mas, Virginie / Mavel, J / Pujol, Claude / Smith, Shannon A / Zaragosi, Sebastien

2009

Abstract: Planktonic foraminifera populations were studied throughout the top 25 meters of the IODP ACEX 302 Hole 4C from the central Arctic Ocean at a resolution varying from 5cm (at the top of the record) to 10cm. Planktonic foraminifera occur in high absolute ... ...

Abstract	Planktonic foraminifera populations were studied throughout the top 25 meters of the IODP ACEX 302 Hole 4C from the central Arctic Ocean at a resolution varying from 5cm (at the top of the record) to 10cm. Planktonic foraminifera occur in high absolute abundances only in the uppermost fifty centimetres and are dominated by the taxa Neogloboquadrina pachyderma. Except for a few intermittent layers below this level,most samples are barren of calcareous microfossils.Within the topmost sediments, Neogloboquadrina pachyderma specimens present large morphological variability in the shape and number of chambers in the finalwhorl, chamber sphericity, size, and coiling direction. Five morphotypeswere identified among the sinistral (sin.) population (Nps-1 to Nps-5), including a small form (Nps-5) that is similar to a non-encrusted normal form also previously identified in the modern Arctic Ocean watermasses. Twenty five percent of the sinistral population is made up by large specimens (Nps-2, 3, 4), with a maximal mean diameter larger than 250æm. Following observations made in peri-Arctic seas (Hillaire-Marcel et al. 2004, doi:10.1016/j.quascirev.2003.08.006), we propose that occurrence of these large-sized specimens of N. pachyderma (sin.) in the central Arctic Ocean sediments could sign North Atlantic water sub-surface penetration.
Language	English
Dates of publication	2009-9999
Size	Online-Ressource
Publisher	PANGAEA - Data Publisher for Earth & Environmental Science
Publishing place	Bremen/Bremerhaven
Document type	Book ; Online
DOI	10.1594/PANGAEA.672078
Database	Library catalogue of the German National Library of Science and Technology (TIB), Hannover

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Article: [Besprechung von:] Noyelle, Thierry J. and Thomas M. Stanback jr.: The economic transformation of American cities. Totowa/NJ 1984

Smith, Wallace F / Noyelle, Thierry J / Stanback jr., Thomas M

The insanity defense , p. 179-180

1985 , Page(s) 179–180

Author's details	Wallace F. Smith
Publisher	Sage
Publishing place	Beverly Hills [u.a.]
Document type	Article
Database	ECONomics Information System

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Book ; Online: The Prophylactic and radical curative activity of RC-12 against Plasmodium cynomolgi in Macaca mulatta / by Thomas M. Sodeman . [et al.]

Sodeman, Thomas M / Contacos, Peter G / Collins, William E / Smith, Clinton S / Jumper, John R / World Health Organization

1972

Abstract: Documents : WHO/MAL/70.705, WHO/MAL/70.706 (WHO/VBC/70.179), WHO/MAL/70.707-70.708, WHO/MAL/70.709 (WHO/VBC/70.183), WHO/MAL/70.710-70.712, WHO/MAL/70.713 (WHO/VBC/70.189), WHO/MAL/70.714-70.715, WHO/MAL/70.716 (WHO/VBC/70.198), WHO/MAL/70.717-70.719, ... ...

Abstract	Documents : WHO/MAL/70.705, WHO/MAL/70.706 (WHO/VBC/70.179), WHO/MAL/70.707-70.708, WHO/MAL/70.709 (WHO/VBC/70.183), WHO/MAL/70.710-70.712, WHO/MAL/70.713 (WHO/VBC/70.189), WHO/MAL/70.714-70.715, WHO/MAL/70.716 (WHO/VBC/70.198), WHO/MAL/70.717-70.719, WHO/MAL/70.720 (WHO/VBC/70.197), WHO/MAL/70.721 (WHO/VBC/70.207), WHO/MAL/70.722-70.725, WHO/MAL/70.726 (WHO/VBC/70.222), WHO/MAL/70.727 (WHO/VBC/70.223), WHO/MAL/70.728-70.730, WHO/MAL/70.731 (WHO/VBC/70.247), WHO/MAL/70.732 (WHO/VBC/70.240), WHO/MAL/70.733 (WHO/VBC/70.230), WHO/MAL/70.734 (WHO/VBC/70.237), WHO/MAL/70.735 (WHO/VBC/70.248), WHO/MAL/70.736 (WHO/VBC/70.249), WHO/MAL/71.737, WHO/MAL/71.738 (WHO/VBC/71.251), WHO/MAL/71.739 (WHO/VBC/71.266), WHO/MAL/71.740, WHO/MAL/71.741 (WHO/VBC/71.278), WHO/MAL/71.742-71.747, WHO/MAL/71.748 (WHO/VBC/71.294), WHO/MAL/71.749, WHO/MAL/71.750 (WHO/VBC/71.304), WHO/MAL/71.751 (WHO/VBC/71.313), WHO/MAL/71.752-71.755, WHO/MAL/72.756-72.761, WHO/MAL/72.762 (WHO/VBC/72.337), WHO/MAL/72.763, WHO/MAL/72.764 (WHO/VBC/72.341), WHO/MAL/72.765 (WHO/VBC/72.346), WHO/MAL/72.766 (WHO/VBC/72.343), WHO/MAL/72.767-72.768, WHO/MAL/72.769 (WHO/VBC/72.360), WHO/MAL/72.770-72.774, WHO/MAL/72.775 (WHO/VBC/72.356), WHO/MAL/72.776 (WHO/VBC/72.387), WHO/MAL/72.777-72.780, WHO/MAL/72.781 (WHO/VBC/72.392), WHO/MAL/72.782, WHO/MAL/72.783 (WHO/VBC/72.402), WHO/MAL/72.784 (WHO/VBC/72.413), WHO/MAL/72.785-72.786, WHO/MAL/72.787 (WHO/VBC/72.409), WHO/MAL/72.788, WHO/MAL/72.789 (WHO/VBC/72.416), WHO/MAL/72.790-72.792, WHO/MAL/73.793, WHO/MAL/73.794 (WHO/VBC/73.426), WHO/MAL/73.795-73.799, WHO/MAL/73.800 (WHO/VBC/73.435), WHO/MAL/73.801-73.802, WHO/MAL/73.803 (WHO/VBC/73.448), WHO/MAL/73.804 (WHO/VBC/73.447), WHO/MAL/73.805 (WHO/VBC/73.444), WHO/MAL/73.806 (WHO/VBC/73.449), WHO/MAL/73.807, WHO/MAL/73.808 (WHO/VBC/73.453), WHO/MAL/73.809, WHO/MAL/73.810 (WHO/VBC/73.454), WHO/MAL/73.811-73.814, WHO/MAL/73.815 (WHO/VBC/73.461), WHO/MAL/73.816-73.817, WHO/MAL/73.818 (WHO/VBC/73.463), WHO/MAL/73.819-73.821, bound in 1 vol Summary in French p. 4 WHO/MAL/72.761 WHO/MAL/72.761 Corr.1 6 p.
Keywords	Malaria ; Catechols ; Antimalarials ; Macaca mulatta ; Parasitic Diseases and their Control ; prevention and control ; therapeutic use
Language	English
Publisher	Geneva : World Health Organization
Document type	Book ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Book ; Online: The Prophylactic and radical curative activity of RC-12 against Plasmodium cynomolgi in Macaca mulatta / by Thomas M. Sodeman . [et al.]

Sodeman, Thomas M / Contacos, Peter G / Collins, William E / Smith, Clinton S / Jumper, John R / World Health Organization

1972

Abstract	Documents : WHO/MAL/70.705, WHO/MAL/70.706 (WHO/VBC/70.179), WHO/MAL/70.707-70.708, WHO/MAL/70.709 (WHO/VBC/70.183), WHO/MAL/70.710-70.712, WHO/MAL/70.713 (WHO/VBC/70.189), WHO/MAL/70.714-70.715, WHO/MAL/70.716 (WHO/VBC/70.198), WHO/MAL/70.717-70.719, WHO/MAL/70.720 (WHO/VBC/70.197), WHO/MAL/70.721 (WHO/VBC/70.207), WHO/MAL/70.722-70.725, WHO/MAL/70.726 (WHO/VBC/70.222), WHO/MAL/70.727 (WHO/VBC/70.223), WHO/MAL/70.728-70.730, WHO/MAL/70.731 (WHO/VBC/70.247), WHO/MAL/70.732 (WHO/VBC/70.240), WHO/MAL/70.733 (WHO/VBC/70.230), WHO/MAL/70.734 (WHO/VBC/70.237), WHO/MAL/70.735 (WHO/VBC/70.248), WHO/MAL/70.736 (WHO/VBC/70.249), WHO/MAL/71.737, WHO/MAL/71.738 (WHO/VBC/71.251), WHO/MAL/71.739 (WHO/VBC/71.266), WHO/MAL/71.740, WHO/MAL/71.741 (WHO/VBC/71.278), WHO/MAL/71.742-71.747, WHO/MAL/71.748 (WHO/VBC/71.294), WHO/MAL/71.749, WHO/MAL/71.750 (WHO/VBC/71.304), WHO/MAL/71.751 (WHO/VBC/71.313), WHO/MAL/71.752-71.755, WHO/MAL/72.756-72.761, WHO/MAL/72.762 (WHO/VBC/72.337), WHO/MAL/72.763, WHO/MAL/72.764 (WHO/VBC/72.341), WHO/MAL/72.765 (WHO/VBC/72.346), WHO/MAL/72.766 (WHO/VBC/72.343), WHO/MAL/72.767-72.768, WHO/MAL/72.769 (WHO/VBC/72.360), WHO/MAL/72.770-72.774, WHO/MAL/72.775 (WHO/VBC/72.356), WHO/MAL/72.776 (WHO/VBC/72.387), WHO/MAL/72.777-72.780, WHO/MAL/72.781 (WHO/VBC/72.392), WHO/MAL/72.782, WHO/MAL/72.783 (WHO/VBC/72.402), WHO/MAL/72.784 (WHO/VBC/72.413), WHO/MAL/72.785-72.786, WHO/MAL/72.787 (WHO/VBC/72.409), WHO/MAL/72.788, WHO/MAL/72.789 (WHO/VBC/72.416), WHO/MAL/72.790-72.792, WHO/MAL/73.793, WHO/MAL/73.794 (WHO/VBC/73.426), WHO/MAL/73.795-73.799, WHO/MAL/73.800 (WHO/VBC/73.435), WHO/MAL/73.801-73.802, WHO/MAL/73.803 (WHO/VBC/73.448), WHO/MAL/73.804 (WHO/VBC/73.447), WHO/MAL/73.805 (WHO/VBC/73.444), WHO/MAL/73.806 (WHO/VBC/73.449), WHO/MAL/73.807, WHO/MAL/73.808 (WHO/VBC/73.453), WHO/MAL/73.809, WHO/MAL/73.810 (WHO/VBC/73.454), WHO/MAL/73.811-73.814, WHO/MAL/73.815 (WHO/VBC/73.461), WHO/MAL/73.816-73.817, WHO/MAL/73.818 (WHO/VBC/73.463), WHO/MAL/73.819-73.821, bound in 1 vol Summary in French p. 4 ...
Keywords	Malaria ; Catechols ; Antimalarials ; Macaca mulatta ; Parasitic Diseases and their Control ; prevention and control ; therapeutic use
Language	English
Publisher	World Health Organization
Document type	Book ; Online
Database	BASE - Bielefeld Academic Search Engine (life sciences selection)

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Article: Is There a Positive Synergistic Effect of Biochar and Compost Soil Amendments on Plant Growth and Physiological Performance?

Smith, Sandy M / Thomas, Sean

Agronomy, 7(1):13

2017

Abstract: The combination of biochar (BC) with compost has been suggested to be a promising strategy to promote plant growth and performance, but although “synergistic” effects have been stated to occur, full-factorial experiments are few, and explicit tests for ... ...

Abstract	The combination of biochar (BC) with compost has been suggested to be a promising strategy to promote plant growth and performance, but although “synergistic” effects have been stated to occur, full-factorial experiments are few, and explicit tests for synergism are lacking. We tested the hypothesis that a combination of BC and spent mushroom substrate (SMS) has a positive synergistic effect on plant growth and physiological performance in a nutrient-limited growing media. A greenhouse experiment with a full factorial design was conducted using mixed-wood BC (3.0 kg·m−2) and SMS (1.5 kg·m−2) (the combination was not co-composted) as organic soil amendments for the annual Abutilon theophrasti and the perennial Salix purpurea. Several measurements related to plant growth and physiological performance were taken throughout the experiment. Contrary to the hypothesis, we found that the combination of BC + SMS had neutral or antagonistic interactive effects on many plant growth traits. Antagonistic effects were found on maximum leaf area, above- and belowground biomass, reproductive allocation, maximum plant height, chlorophyll fluorescence, and stomatal conductance of A. theophrasti. The effect on S. purpurea was mostly neutral. We conclude that the generalization that BC and compost have synergistic effects on plant performance is not supported.
Keywords	Abutilon theophrasti ; Salix purpurea ; compost ; biochar ; soil amendments ; spent mushroom substrate ; synergistic effects
Language	English
Document type	Article
Database	Repository for Life Sciences

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Book ; Online: Auswirkungen von organischen Bodenzusätzen auf biodiversitätsgefährdende Stoffströme in der Landwirtschaft

Siedt, Martin / Nabel, Moritz / Roß-Nickoll, Martina / Schäffer, Andreas / Smith, Kilian E. C. / Dongen, Joost T. van

Einflüsse auf die mikrobielle Diversität, die Nährstoffe, den Abbau von Pestiziden und die Mobilität von Schwermetallen in Ackerböden

(BfN-Schriften ; 660 (2023))

2023

Author's details	Martin Siedt, Moritz Nabel, Martina Roß-Nickoll, Andreas Schäffer, Kilian E.C. Smith, Joost T. van Dongen
Series title	BfN-Schriften ; 660 (2023)
Collection
Language	German
Size	1 Online-Ressource (79 Seiten), Illustrationen, Diagramme
Publisher	Bundesamt für Naturschutz
Publishing place	Bonn
Publishing country	Germany
Document type	Book ; Online
Note	Open Access
HBZ-ID	HT030061658
ISBN	9783896244215 ; 3896244213
Database	ZB MED Catalogue: Medicine, Health, Nutrition, Environment, Agriculture

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Book ; Online: Age, biostratigraphic and paleomagnetic events at DSDP Leg 94, supplementary data to: Baldauf, Jack G; Thomas, Ellen; Clement, Bradford M; Takayama, Toshiaki; Weaver, Philip PE; Backman, Jan; Jenkins, G; Mudie, Peta J; Westberg-Smith, MJ (1987): Magnetostratigraphic and biostratigraphic synthesis, Deep Sea Drilling Project Leg 94. In: Ruddiman, WF; Kidd, RB; Thomas, E; et al. (eds.), Initial Reports of the Deep Sea Drilling Project (U.S. Govt. Printing Office), 94, 1159-1205

Baldauf, Jack G / Backman, Jan / Clement, Bradford M / Jenkins, G / Mudie, Peta J / Takayama, Toshiaki / Thomas, Ellen / Weaver, Philip PE / Westberg-Smith, MJ

1987

Abstract: During DSDP Leg 94 sediment was recovered from 22 holes at six sites situated between 37° and 53°N in the North Atlantic. Paleomagnetic, calcareous nannofossil, foraminiferal, diatom, radiolarian, and dinocyst stratigraphic studies were completed. The ... ...

Abstract	During DSDP Leg 94 sediment was recovered from 22 holes at six sites situated between 37° and 53°N in the North Atlantic. Paleomagnetic, calcareous nannofossil, foraminiferal, diatom, radiolarian, and dinocyst stratigraphic studies were completed. The excellent magnetostratigraphic results, the near-complete recovery, and the abundant fossil content of the sediment allowed refinement of these stratigraphies, especially for the upper Pliocene-Holocene. Because the Leg 94 sites span middle and high North Atlantic latitudes, it is possible to use them to evaluate the synchrony of late Pliocene to Holocene datums.
Language	English
Dates of publication	1987-9999
Size	Online-Ressource
Publisher	PANGAEA - Data Publisher for Earth & Environmental Science
Publishing place	Bremen/Bremerhaven
Document type	Book ; Online
Note	This dataset is supplement to doi:10.2973/dsdp.proc.94.146.1987
DOI	10.1594/PANGAEA.788798
Database	Library catalogue of the German National Library of Science and Technology (TIB), Hannover

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Article ; Online: Proteasome activator 28γ (PA28γ) allosterically activates trypsin-like proteolysis by binding to the α-ring of the 20S proteasome.

Thomas, Taylor A / Smith, David M

The Journal of biological chemistry

2022 Volume 298, Issue 8, Page(s) 102140

Abstract: Proteasome activator 28γ (PA28γ/REGγ) is a member of the 11S family of proteasomal regulators that is constitutively expressed in the nucleus and implicated in various diseases, including certain cancers and systemic lupus erythematosus. Despite years of ...

Abstract	Proteasome activator 28γ (PA28γ/REGγ) is a member of the 11S family of proteasomal regulators that is constitutively expressed in the nucleus and implicated in various diseases, including certain cancers and systemic lupus erythematosus. Despite years of investigation, how PA28γ functions to stimulate proteasomal protein degradation remains unclear. Alternative hypotheses have been proposed for the molecular mechanism of PA28γ, including the following: (1) substrate selection, (2) allosteric upregulation of the trypsin-like (T-L) site, (3) allosteric inhibition of the chymotrypsin-like (CT-L) and caspase-like (C-L) sites, (4) conversion of the CT-L or C-L sites to new T-L sites, and (5) gate opening alone or in combination with a previous hypothesis. Here, by mechanistically decoupling gating effects from active site effects, we unambiguously demonstrate that WT PA28γ allosterically activates the T-L site. We show PA28γ binding increases the Kcat/Km by 13-fold for T-L peptide substrates while having little-to-no effect on hydrolysis kinetics for CT-L or C-L substrates. Furthermore, mutagenesis and domain swaps of PA28γ reveal that it does not select for T-L peptide substrates through either the substrate entry pore or the distal intrinsically disordered region. We also show that a previously reported point mutation can functionally switch PA28γ from a T-L activating to a gate-opening activator in a mutually exclusive fashion. Finally, using cryogenic electron microscopy, we visualized the PA28γ-proteasome complex at 4.3 Å and confirmed its expected quaternary structure. The results of this study provide unambiguous evidence that PA28γ can function by binding the 20S proteasome to allosterically activate the T-L proteolytic site.
MeSH term(s)	Autoantigens/metabolism ; Proteasome Endopeptidase Complex/genetics ; Proteasome Endopeptidase Complex/metabolism ; Proteolysis ; Trypsin/metabolism
Chemical Substances	Autoantigens ; Ki antigen ; Trypsin (EC 3.4.21.4) ; Proteasome Endopeptidase Complex (EC 3.4.25.1)
Language	English
Publishing date	2022-06-14
Publishing country	United States
Document type	Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
ZDB-ID	2997-x
ISSN	1083-351X ; 0021-9258
ISSN (online)	1083-351X
ISSN	0021-9258
DOI	10.1016/j.jbc.2022.102140
Database	MEDical Literature Analysis and Retrieval System OnLINE

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Article ; Online: Structure, Function, and Allosteric Regulation of the 20S Proteasome by the 11S/PA28 Family of Proteasome Activators.

Thomas, Taylor / Salcedo-Tacuma, David / Smith, David M

Biomolecules

2023 Volume 13, Issue 9

Abstract: The proteasome, a complex multi-catalytic protease machinery, orchestrates the protein degradation essential for maintaining cellular homeostasis, and its dysregulation also underlies many different types of diseases. Its function is regulated by many ... ...

Abstract	The proteasome, a complex multi-catalytic protease machinery, orchestrates the protein degradation essential for maintaining cellular homeostasis, and its dysregulation also underlies many different types of diseases. Its function is regulated by many different mechanisms that encompass various factors such as proteasome activators (PAs), adaptor proteins, and post-translational modifications. This review highlights the unique characteristics of proteasomal regulation through the lens of a distinct family of regulators, the 11S, REGs, or PA26/PA28. This ATP-independent family, spanning from amoebas to mammals, exhibits a common architectural structure; yet, their cellular biology and criteria for protein degradation remain mostly elusive. We delve into their evolution and cellular biology, and contrast their structure and function comprehensively, emphasizing the unanswered questions regarding their regulatory mechanisms and broader roles in proteostasis. A deeper understanding of these processes will illuminate the roles of this regulatory family in biology and disease, thus contributing to the advancement of therapeutic strategies.
MeSH term(s)	Animals ; Proteasome Endopeptidase Complex/metabolism ; Allosteric Regulation ; Cytoplasm/metabolism ; Mammals/metabolism ; Proteolysis
Chemical Substances	Proteasome Endopeptidase Complex (EC 3.4.25.1)
Language	English
Publishing date	2023-08-29
Publishing country	Switzerland
Document type	Journal Article ; Review
ZDB-ID	2701262-1
ISSN	2218-273X ; 2218-273X
ISSN (online)	2218-273X
ISSN	2218-273X
DOI	10.3390/biom13091326
Database	MEDical Literature Analysis and Retrieval System OnLINE

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