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  1. Article ; Online: Characterization of RNase J.

    Vandanashree, Muralidharan / Singh, Ankur Kumar / Gopal, Balasubramanian

    Methods in enzymology

    2023  Volume 692, Page(s) 177–215

    Abstract: RNase J is involved in RNA maturation as well as degradation of RNA to the level of mononucleotides ... of the cellular metabolism in bacteria. RNase J is the first ribonuclease that was shown to have both endonuclease ... and 5'-3' exonuclease activity. RNase J enzymes can be identified by their characteristic sequence ...

    Abstract RNase J is involved in RNA maturation as well as degradation of RNA to the level of mononucleotides. This enzyme plays a vital role in maintaining intracellular RNA levels and governs different steps of the cellular metabolism in bacteria. RNase J is the first ribonuclease that was shown to have both endonuclease and 5'-3' exonuclease activity. RNase J enzymes can be identified by their characteristic sequence features and domain architecture. The quaternary structure of RNase J plays a role in regulating enzyme activity. The structure of RNase J has been characterized from several homologs. These reveal extensive overall structural similarity alongside a distinct active site topology that coordinates a metal cofactor. The metal cofactor is essential for catalytic activity. The catalytic activity of RNase J is influenced by oligomerization, the choice and stoichiometry of metal cofactors, and the 5' phosphorylation state of the RNA substrate. Here we describe the sequence and structural features of RNase J alongside phylogenetic analysis and reported functional roles in diverse organisms. We also provide a detailed purification strategy to obtain an RNase J enzyme sample with or without a metal cofactor. Different methods to identify the nature of the bound metal cofactor, the binding affinity and stoichiometry are presented. Finally, we describe enzyme assays to characterize RNase J using radioactive and fluorescence-based strategies with diverse RNA substrates.
    MeSH term(s) Ribonucleases/metabolism ; Phylogeny ; Endoribonucleases/metabolism ; RNA/chemistry ; Ribonuclease, Pancreatic ; Metals
    Chemical Substances Ribonucleases (EC 3.1.-) ; Endoribonucleases (EC 3.1.-) ; RNA (63231-63-0) ; Ribonuclease, Pancreatic (EC 3.1.27.5) ; Metals
    Language English
    Publishing date 2023-05-01
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1557-7988
    ISSN (online) 1557-7988
    DOI 10.1016/bs.mie.2023.03.020
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: New Structures in the J/ψJ/ψ Mass Spectrum in Proton-Proton Collisions at sqrt[s]=13  TeV.

    Hayrapetyan, A / Tumasyan, A / Adam, W / Andrejkovic, J W / Bergauer, T / Chatterjee, S / Damanakis, K / Dragicevic, M / Escalante Del Valle, A / Hussain, P S / Jeitler, M / Krammer, N / Liko, D / Mikulec, I / Schieck, J / Schöfbeck, R / Schwarz, D / Sonawane, M / Templ, S /
    Waltenberger, W / Wulz, C-E / Darwish, M R / Janssen, T / Van Mechelen, P / Bols, E S / D'Hondt, J / Dansana, S / De Moor, A / Delcourt, M / El Faham, H / Lowette, S / Makarenko, I / Müller, D / Sahasransu, A R / Tavernier, S / Tytgat, M / Van Putte, S / Vannerom, D / Clerbaux, B / De Lentdecker, G / Favart, L / Hohov, D / Jaramillo, J / Khalilzadeh, A / Lee, K / Mahdavikhorrami, M / Malara, A / Paredes, S / Pétré, L / Postiau, N / Thomas, L / Vanden Bemden, M / Vander Velde, C / Vanlaer, P / De Coen, M / Dobur, D / Hong, Y / Knolle, J / Lambrecht, L / Mestdach, G / Rendón, C / Samalan, A / Skovpen, K / Van Den Bossche, N / Wezenbeek, L / Benecke, A / Bruno, G / Caputo, C / Delaere, C / Donertas, I S / Giammanco, A / Jaffel, K / Jain, Sa / Lemaitre, V / Lidrych, J / Mastrapasqua, P / Mondal, K / Tran, T T / Wertz, S / Alves, G A / Coelho, E / Hensel, C / Menezes De Oliveira, T / Moraes, A / Rebello Teles, P / Soeiro, M / Aldá Júnior, W L / Alves Gallo Pereira, M / Barroso Ferreira Filho, M / Brandao Malbouisson, H / Carvalho, W / Chinellato, J / Da Costa, E M / Da Silveira, G G / De Jesus Damiao, D / Fonseca De Souza, S / Martins, J / Mora Herrera, C / Mota Amarilo, K / Mundim, L / Nogima, H / Santoro, A / Silva Do Amaral, S M / Sznajder, A / Thiel, M / Vilela Pereira, A / Bernardes, C A / Calligaris, L / Tomei, T R Fernandez Perez / Gregores, E M / Mercadante, P G / Novaes, S F / Orzari, B / Padula, Sandra S / Aleksandrov, A / Antchev, G / Hadjiiska, R / Iaydjiev, P / Misheva, M / Shopova, M / Sultanov, G / Dimitrov, A / Ivanov, T / Litov, L / Pavlov, B / Petkov, P / Petrov, A / Shumka, E / Keshri, S / Thakur, S / Cheng, T / Guo, Q / Javaid, T / Mittal, M / Yuan, L / Bauer, G / Chen, J / Gu, J / Hu, Z / Liu, J / Wang, X / Wen, H / Yi, K / Zhang, J / Chen, G M / Chen, H S / Chen, M / Iemmi, F / Jiang, C H / Kapoor, A / Liao, H / Liu, Z-A / Monti, F / Sharma, R / Song, J N / Tao, J / Wang, C / Wang, J / Wang, Z / Zhang, H / Agapitos, A / Ban, Y / Levin, A / Li, C / Li, Q / Lyu, X / Mao, Y / Qian, S J / Sun, X / Wang, D / Yang, H / Zhou, C / You, Z / Lu, N / Gao, X / Leggat, D / Okawa, H / Zhang, Y / Lin, Z / Lu, C / Xiao, M / Avila, C / Barbosa Trujillo, D A / Cabrera, A / Florez, C / Fraga, J / Reyes Vega, J A / Mejia Guisao, J / Ramirez, F / Rodriguez, M / Ruiz Alvarez, J D / Giljanovic, D / Godinovic, N / Lelas, D / Sculac, A / Kovac, M / Sculac, T / Bargassa, P / Brigljevic, V / Chitroda, B K / Ferencek, D / Mishra, S / Starodumov, A / Susa, T / Attikis, A / Christoforou, K / Konstantinou, S / Mousa, J / Nicolaou, C / Ptochos, F / Razis, P A / Rykaczewski, H / Saka, H / Stepennov, A / Finger, M / Kveton, A / Ayala, E / Carrera Jarrin, E / Abdelalim, A A / Salama, E / Abdullah Al-Mashad, M / Mahmoud, M A / Dewanjee, R K / Ehataht, K / Kadastik, M / Lange, T / Nandan, S / Nielsen, C / Pata, J / Raidal, M / Tani, L / Veelken, C / Kirschenmann, H / Osterberg, K / Voutilainen, M / Bharthuar, S / Brücken, E / Garcia, F / Havukainen, J / Kallonen, K T S / Kim, M S / Kinnunen, R / Lampén, T / Lassila-Perini, K / Lehti, S / Lindén, T / Lotti, M / Martikainen, L / Myllymäki, M / Rantanen, M M / Siikonen, H / Tuominen, E / Tuominiemi, J / Luukka, P / Petrow, H / Tuuva, T / Besancon, M / Couderc, F / Dejardin, M / Denegri, D / Faure, J L / Ferri, F / Ganjour, S / Gras, P / Hamel de Monchenault, G / Lohezic, V / Malcles, J / Rander, J / Rosowsky, A / Sahin, M Ö / Savoy-Navarro, A / Simkina, P / Titov, M / Baldenegro Barrera, C / Beaudette, F / Buchot Perraguin, A / Busson, P / Cappati, A / Charlot, C / Damas, F / Davignon, O / Falmagne, G / Fontana Santos Alves, B A / Ghosh, S / Gilbert, A / Granier de Cassagnac, R / Hakimi, A / Harikrishnan, B / Kalipoliti, L / Liu, G / Motta, J / Nguyen, M / Ochando, C / Portales, L / Salerno, R / Sarkar, U / Sauvan, J B / Sirois, Y / Tarabini, A / Vernazza, E / Zabi, A / Zghiche, A / Agram, J-L / Andrea, J / Apparu, D / Bloch, D / Brom, J-M / Chabert, E C / Collard, C / Falke, S / Goerlach, U / Grimault, C / Haeberle, R / Le Bihan, A-C / Sessini, M A / Van Hove, P / Beauceron, S / Blancon, B / Boudoul, G / Chanon, N / Choi, J / Contardo, D / Depasse, P / Dozen, C / El Mamouni, H / Fay, J / Gascon, S / Gouzevitch, M / Greenberg, C / Grenier, G / Ille, B / Laktineh, I B / Lethuillier, M / Mirabito, L / Perries, S / Vander Donckt, M / Verdier, P / Xiao, J / Lomidze, I / Toriashvili, T / Tsamalaidze, Z / Botta, V / Feld, L / Klein, K / Lipinski, M / Meuser, D / Pauls, A / Röwert, N / Teroerde, M / Diekmann, S / Dodonova, A / Eich, N / Eliseev, D / Engelke, F / Erdmann, M / Fackeldey, P / Fischer, B / Hebbeker, T / Hoepfner, K / Ivone, F / Jung, A / Lee, M Y / Mastrolorenzo, L / Merschmeyer, M / Meyer, A / Mukherjee, S / Noll, D / Novak, A / Nowotny, F / Pozdnyakov, A / Rath, Y / Redjeb, W / Rehm, F / Reithler, H / Sarkisovi, V / Schmidt, A / Schuler, S C / Sharma, A / Stein, A / Torres Da Silva De Araujo, F / Vigilante, L / Wiedenbeck, S / Zaleski, S / Dziwok, C / Flügge, G / Haj Ahmad, W / Kress, T / Nowack, A / Pooth, O / Stahl, A / Ziemons, T / Zotz, A / Aarup Petersen, H / Aldaya Martin, M / Alimena, J / Amoroso, S / An, Y / Baxter, S / Bayatmakou, M / Becerril Gonzalez, H / Behnke, O / Belvedere, A / Bhattacharya, S / Blekman, F / Borras, K / Brunner, D / Campbell, A / Cardini, A / Cheng, C / Colombina, F / Consuegra Rodríguez, S / Correia Silva, G / De Silva, M / Eckerlin, G / Eckstein, D / Estevez Banos, L I / Filatov, O / Gallo, E / Geiser, A / Giraldi, A / Greau, G / Guglielmi, V / Guthoff, M / Hinzmann, A / Jafari, A / Jeppe, L / Jomhari, N Z / Kaech, B / Kasemann, M / Kaveh, H / Kleinwort, C / Kogler, R / Komm, M / Krücker, D / Lange, W / Leyva Pernia, D / Lipka, K / Lohmann, W / Mankel, R / Melzer-Pellmann, I-A / Mendizabal Morentin, M / Metwally, J / Meyer, A B / Milella, G / Mussgiller, A / Nürnberg, A / Otarid, Y / Pérez Adán, D / Ranken, E / Raspereza, A / Ribeiro Lopes, B / Rübenach, J / Saggio, A / Scham, M / Scheurer, V / Schnake, S / Schütze, P / Schwanenberger, C / Shchedrolosiev, M / Sosa Ricardo, R E / Sreelatha Pramod, L P / Stafford, D / Vazzoler, F / Ventura Barroso, A / Walsh, R / Wang, Q / Wen, Y / Wichmann, K / Wiens, L / Wissing, C / Wuchterl, S / Yang, Y / Zimermmane Castro Santos, A / Albrecht, A / Albrecht, S / Antonello, M / Bein, S / Benato, L / Bonanomi, M / Connor, P / Eich, M / El Morabit, K / Fischer, Y / Fröhlich, A / Garbers, C / Garutti, E / Grohsjean, A / Hajheidari, M / Haller, J / Jabusch, H R / Kasieczka, G / Keicher, P / Klanner, R / Korcari, W / Kramer, T / Kutzner, V / Labe, F / Lange, J / Lobanov, A / Matthies, C / Mehta, A / Moureaux, L / Mrowietz, M / Nigamova, A / Nissan, Y / Paasch, A / Pena Rodriguez, K J / Quadfasel, T / Raciti, B / Rieger, M / Savoiu, D / Schindler, J / Schleper, P / Schröder, M / Schwandt, J / Sommerhalder, M / Stadie, H / Steinbrück, G / Tews, A / Wolf, M / Brommer, S / Burkart, M / Butz, E / Chwalek, T / Dierlamm, A / Droll, A / Faltermann, N / Giffels, M / Gottmann, A / Hartmann, F / Horzela, M / Husemann, U / Klute, M / Koppenhöfer, R / Link, M / Lintuluoto, A / Maier, S / Mitra, S / Mormile, M / Müller, Th / Neukum, M / Oh, M / Quast, G / Rabbertz, K / Shvetsov, I / Simonis, H J / Trevisani, N / Ulrich, R / van der Linden, J / Von Cube, R F / Wassmer, M / Wieland, S / Wittig, F / Wolf, R / Wunsch, S / Zuo, X / Anagnostou, G / Assiouras, P / Daskalakis, G / Kyriakis, A / Papadopoulos, A / Stakia, A / Karasavvas, D / Kontaxakis, P / Melachroinos, G / Panagiotou, A / Papavergou, I / Paraskevas, I / Saoulidou, N / Theofilatos, K / Tziaferi, E / Vellidis, K / Zisopoulos, I / Bakas, G / Chatzistavrou, T / Karapostoli, G / Kousouris, K / Papakrivopoulos, I / Siamarkou, E / Tsipolitis, G / Zacharopoulou, A / Adamidis, K / Bestintzanos, I / Evangelou, I / Foudas, C / Gianneios, P / Kamtsikis, C / Katsoulis, P / Kokkas, P / Kosmoglou Kioseoglou, P G / Manthos, N / Papadopoulos, I / Strologas, J / Csanád, M / Farkas, K / Gadallah, M M A / Kadlecsik, Á / Major, P / Mandal, K / Pásztor, G / Rádl, A J / Veres, G I / Bartók, M / Hajdu, C / Horvath, D / Sikler, F / Veszpremi, V / Bencze, G / Czellar, S / Karancsi, J / Molnar, J / Szillasi, Z / Raics, P / Ujvari, B / Zilizi, G / Csorgo, T / Nemes, F / Novak, T / Babbar, J / Bansal, S / Beri, S B / Bhatnagar, V / Chaudhary, G / Chauhan, S / Dhingra, N / Gupta, R / Kaur, A / Kaur, H / Kaur, M / Kumar, S / Kumari, P / Meena, M / Sandeep, K / Sheokand, T / Singh, J B / Singla, A / Ahmed, A / Bhardwaj, A / Chhetri, A / Choudhary, B C / Kumar, A / Naimuddin, M / Ranjan, K / Saumya, S / Baradia, S / Barman, S / Bhowmik, D / Dutta, S / Gomber, B / Palit, P / Saha, G / Sahu, B / Sarkar, S / Behera, P K / Behera, S C / Jana, P / Kalbhor, P / Komaragiri, J R / Kumar, D / Ameen, M Mohammad Mobassir / Panwar, L / Pradhan, R / Pujahari, P R / Saha, N R / Sikdar, A K / Verma, S / Aziz, T / Das, I / Dugad, S / Kumar, M / Mohanty, G B / Suryadevara, P / Bala, A / Banerjee, S / Chatterjee, R M / Guchait, M / Karmakar, S / Majumder, G / Mazumdar, K / Thachayath, A / Bahinipati, S / Das, A K / Kar, C / Maity, D / Mal, P / Mishra, T / Muraleedharan Nair Bindhu, V K / Naskar, K / Nayak, A / Sadangi, P / Saha, P / Swain, S K / Varghese, S / Vats, D / Alpana, A / Dube, S / Kansal, B / Laha, A / Rastogi, A / Sharma, S / Bakhshiansohi, H / Khazaie, E / Zeinali, M / Chenarani, S / Etesami, S M / Khakzad, M / Mohammadi Najafabadi, M / Grunewald, M / Abbrescia, M / Aly, R / Colaleo, A / Creanza, D / D Anzi, B / De Filippis, N / De Palma, M / Di Florio, A / Elmetenawee, W / Fiore, L / Iaselli, G / Maggi, G / Maggi, M / Margjeka, I / Mastrapasqua, V / My, S / Nuzzo, S / Pellecchia, A / Pompili, A / Pugliese, G / Radogna, R / Ramirez-Sanchez, G / Ramos, D / Ranieri, A / Silvestris, L / Simone, F M / Sözbilir, Ü / Stamerra, A / Venditti, R / Verwilligen, P / Zaza, A / Abbiendi, G / Battilana, C / Bonacorsi, D / Borgonovi, L / Campanini, R / Capiluppi, P / Castro, A / Cavallo, F R / Cuffiani, M / Dallavalle, G M / Diotalevi, T / Fabbri, F / Fanfani, A / Fasanella, D / Giacomelli, P / Giommi, L / Grandi, C / Guiducci, L / Lo Meo, S / Lunerti, L / Marcellini, S / Masetti, G / Navarria, F L / Perrotta, A / Primavera, F / Rossi, A M / Rovelli, T / Costa, S / Di Mattia, A / Potenza, R / Tricomi, A / Tuve, C / Barbagli, G / Bardelli, G / Camaiani, B / Cassese, A / Ceccarelli, R / Ciulli, V / Civinini, C / D'Alessandro, R / Focardi, E / Latino, G / Lenzi, P / Lizzo, M / Meschini, M / Paoletti, S / Papanastassiou, A / Sguazzoni, G / Viliani, L / Benussi, L / Bianco, S / Meola, S / Piccolo, D / Chatagnon, P / Ferro, F / Robutti, E / Tosi, S / Benaglia, A / Boldrini, G / Brivio, F / Cetorelli, F / De Guio, F / Dinardo, M E / Dini, P / Gennai, S / Ghezzi, A / Govoni, P / Guzzi, L / Lucchini, M T / Malberti, M / Malvezzi, S / Massironi, A / Menasce, D / Moroni, L / Paganoni, M / Pedrini, D / Pinolini, B S / Ragazzi, S / Redaelli, N / Tabarelli de Fatis, T / Zuolo, D / Buontempo, S / Cagnotta, A / Carnevali, F / Cavallo, N / De Iorio, A / Fabozzi, F / Iorio, A O M / Lista, L / Paolucci, P / Rossi, B / Sciacca, C / Ardino, R / Azzi, P / Bacchetta, N / Bortignon, P / Bragagnolo, A / Carlin, R / Checchia, P / Dorigo, T / Gasparini, F / Gasparini, U / Grosso, G / Layer, L / Lusiani, E / Margoni, M / Meneguzzo, A T / Migliorini, M / Montecassiano, F / Pazzini, J / Ronchese, P / Rossin, R / Simonetto, F / Strong, G / Tosi, M / Triossi, A / Ventura, S / Yarar, H / Zanetti, M / Zotto, P / Zucchetta, A / Zumerle, G / Abu Zeid, S / Aimè, C / Braghieri, A / Calzaferri, S / Fiorina, D / Montagna, P / Re, V / Riccardi, C / Salvini, P / Vai, I / Vitulo, P / Ajmal, S / Asenov, P / Bilei, G M / Ciangottini, D / Fanò, L / Magherini, M / Mantovani, G / Mariani, V / Menichelli, M / Moscatelli, F / Piccinelli, A / Presilla, M / Rossi, A / Santocchia, A / Spiga, D / Tedeschi, T / Azzurri, P / Bagliesi, G / Bhattacharya, R / Bianchini, L / Boccali, T / Bossini, E / Bruschini, D / Castaldi, R / Ciocci, M A / Cipriani, M / D'Amante, V / Dell'Orso, R / Donato, S / Giassi, A / Ligabue, F / Matos Figueiredo, D / Messineo, A / Musich, M / Palla, F / Parolia, S / Rizzi, A / Rolandi, G / Roy Chowdhury, S / Sarkar, T / Scribano, A / Spagnolo, P / Tenchini, R / Tonelli, G / Turini, N / Venturi, A / Verdini, P G / Barria, P / Campana, M / Cavallari, F / Cunqueiro Mendez, L / Del Re, D / Di Marco, E / Diemoz, M / Errico, F / Longo, E / Meridiani, P / Mijuskovic, J / Organtini, G / Pandolfi, F / Paramatti, R / Quaranta, C / Rahatlou, S / Rovelli, C / Santanastasio, F / Soffi, L / Tramontano, R / Amapane, N / Arcidiacono, R / Argiro, S / Arneodo, M / Bartosik, N / Bellan, R / Bellora, A / Biino, C / Cartiglia, N / Costa, M / Covarelli, R / Demaria, N / Finco, L / Grippo, M / Kiani, B / Legger, F / Luongo, F / Mariotti, C / Maselli, S / Mecca, A / Migliore, E / Monteno, M / Mulargia, R / Obertino, M M / Ortona, G / Pacher, L / Pastrone, N / Pelliccioni, M / Ruspa, M / Siviero, F / Sola, V / Solano, A / Soldi, D / Staiano, A / Tarricone, C / Tornago, M / Trocino, D / Umoret, G / Vagnerini, A / Vlasov, E / Belforte, S / Candelise, V / Casarsa, M / Cossutti, F / De Leo, K / Della Ricca, G / Dogra, S / Hong, J / Huh, C / Kim, B / Kim, D H / Kim, J / Lee, H / Lee, S W / Moon, C S / Oh, Y D / Pak, S I / Ryu, M S / Sekmen, S / Yang, Y C / Bak, G / Gwak, P / Kim, H / Moon, D H / Asilar, E / Kim, D / Kim, T J / Merlin, J A / Park, J / Choi, S / Han, S / Hong, B / Lee, K S / Park, S K / Yoo, J / Goh, J / Kim, H S / Kim, Y / Lee, S / Almond, J / Bhyun, J H / Jeon, S / Jun, W / Kim, J S / Ko, S / Kwon, H / Lee, J / Oh, B H / Oh, S B / Seo, H / Yang, U K / Yoon, I / Jang, W / Kang, D Y / Kang, Y / Kim, S / Ko, B / Lee, J S H / Lee, Y / Park, I C / Roh, Y / Watson, I J / Yang, S / Ha, S / Yoo, H D / Choi, M / Kim, M R / Yu, I / Beyrouthy, T / Maghrbi, Y / Dreimanis, K / Gaile, A / Pikurs, G / Potrebko, A / Seidel, M / Veckalns, V / Strautnieks, N R / 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    Physical review letters

    2024  Volume 132, Issue 11, Page(s) 111901

    Abstract: A search is reported for near-threshold structures in the J/ψJ/ψ invariant mass spectrum produced ...

    Abstract A search is reported for near-threshold structures in the J/ψJ/ψ invariant mass spectrum produced in proton-proton collisions at sqrt[s]=13  TeV from data collected by the CMS experiment, corresponding to an integrated luminosity of 135  fb^{-1}. Three structures are found, and a model with quantum interference among these structures provides a good description of the data. A new structure is observed with a local significance above 5 standard deviations at a mass of 6638_{-38}^{+43}(stat)_{-31}^{+16}(syst)  MeV. Another structure with even higher significance is found at a mass of 6847_{-28}^{+44}(stat)_{-20}^{+48}(syst)  MeV, which is consistent with the X(6900) resonance reported by the LHCb experiment and confirmed by the ATLAS experiment. Evidence for another new structure, with a local significance of 4.7 standard deviations, is found at a mass of 7134_{-25}^{+48}(stat)_{-15}^{+41}(syst)  MeV. Results are also reported for a model without interference, which does not fit the data as well and shows mass shifts up to 150 MeV relative to the model with interference.
    Language English
    Publishing date 2024-04-02
    Publishing country United States
    Document type Journal Article
    ZDB-ID 208853-8
    ISSN 1079-7114 ; 0031-9007
    ISSN (online) 1079-7114
    ISSN 0031-9007
    DOI 10.1103/PhysRevLett.132.111901
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Probing the Gluonic Structure of the Deuteron with J/ψ Photoproduction in d+Au Ultraperipheral Collisions.

    Abdallah, M S / Aboona, B E / Adam, J / Adamczyk, L / Adams, J R / Adkins, J K / Agakishiev, G / Aggarwal, I / Aggarwal, M M / Ahammed, Z / Aitbaev, A / Alekseev, I / Anderson, D M / Aparin, A / Aschenauer, E C / Ashraf, M U / Atetalla, F G / Attri, A / Averichev, G S /
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    Physical review letters

    2022  Volume 128, Issue 12, Page(s) 122303

    Abstract: ... In this Letter, we report the first measurement of J/ψ photoproduction off the deuteron in UPCs at the center ...

    Abstract Understanding gluon density distributions and how they are modified in nuclei are among the most important goals in nuclear physics. In recent years, diffractive vector meson production measured in ultraperipheral collisions (UPCs) at heavy-ion colliders has provided a new tool for probing the gluon density. In this Letter, we report the first measurement of J/ψ photoproduction off the deuteron in UPCs at the center-of-mass energy sqrt[s_{NN}]=200  GeV in d+Au collisions. The differential cross section as a function of momentum transfer -t is measured. In addition, data with a neutron tagged in the deuteron-going zero-degree calorimeter is investigated for the first time, which is found to be consistent with the expectation of incoherent diffractive scattering at low momentum transfer. Theoretical predictions based on the color glass condensate saturation model and the leading twist approximation nuclear shadowing model are compared with the data quantitatively. A better agreement with the saturation model has been observed. With the current measurement, the results are found to be directly sensitive to the gluon density distribution of the deuteron and the deuteron breakup process, which provides insights into the nuclear gluonic structure.
    Language English
    Publishing date 2022-04-08
    Publishing country United States
    Document type Journal Article
    ZDB-ID 208853-8
    ISSN 1079-7114 ; 0031-9007
    ISSN (online) 1079-7114
    ISSN 0031-9007
    DOI 10.1103/PhysRevLett.128.122303
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Measurement of the J/ψ Polarization with Respect to the Event Plane in Pb-Pb Collisions at the LHC.

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    Physical review letters

    2023  Volume 131, Issue 4, Page(s) 42303

    Abstract: We study the polarization of inclusive J/ψ produced in Pb-Pb collisions at sqrt[s_{NN}]=5.02  TeV ... by considering the angle between the positive-charge decay muon in the J/ψ rest frame and the axis perpendicular ...

    Abstract We study the polarization of inclusive J/ψ produced in Pb-Pb collisions at sqrt[s_{NN}]=5.02  TeV at the LHC in the dimuon channel, via the measurement of the angular distribution of its decay products. We perform the study in the rapidity region 2.5<y<4, for three transverse momentum intervals (2<p_{T}<4, 4<p_{T}<6, 6<p_{T}<10  GeV/c) and as a function of the centrality of the collision for 2<p_{T}<6  GeV/c. For the first time, the polarization is measured with respect to the event plane of the collision, by considering the angle between the positive-charge decay muon in the <mark>J/ψ rest frame and the axis perpendicular to the event-plane vector in the laboratory system. A small transverse polarization is measured, with a significance reaching 3.9σ at low p_{T} and for intermediate centrality values. The polarization could be connected with the behavior of the quark-gluon plasma, formed in Pb-Pb collisions, as a rotating fluid with large vorticity, as well as with the existence of a strong magnetic field in the early stage of its formation.
    Language English
    Publishing date 2023-07-05
    Publishing country United States
    Document type Journal Article
    ZDB-ID 208853-8
    ISSN 1079-7114 ; 0031-9007
    ISSN (online) 1079-7114
    ISSN 0031-9007
    DOI 10.1103/PhysRevLett.131.042303
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  5. Article: Exported J domain proteins of the human malaria parasite.

    Almaazmi, Shaikha Y / Singh, Harpreet / Dutta, Tanima / Blatch, Gregory L

    Frontiers in molecular biosciences

    2022  Volume 9, Page(s) 978663

    Abstract: The heat shock protein 40 (Hsp40) family, also called J domain proteins (JDPs), regulate ...

    Abstract The heat shock protein 40 (Hsp40) family, also called J domain proteins (JDPs), regulate their Hsp70 partners by ensuring that they are engaging the right substrate at the right time and in the right location within the cell. A number of JDPs can serve as co-chaperone for a particular Hsp70, and so one generally finds many more JDPs than Hsp70s in the cell. In humans there are 13 Hsp70s and 49 JDPs. The human malaria parasite,
    Language English
    Publishing date 2022-08-31
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2814330-9
    ISSN 2296-889X
    ISSN 2296-889X
    DOI 10.3389/fmolb.2022.978663
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  6. Article ; Online: A 10 J shock impedance in sinus rhythm correlates with a 65 J defibrillation impedance during subcutaneous defibrillator implantation using an intermuscular technique.

    Okabe, Toshimasa / Savona, Salvatore J / Matto, Faisal / Ward, Chad / Singh, Prabhpreet / Afzal, Muhammad R / Kalbfleisch, Steven J / Weiss, Raul / Houmsse, Mahmoud / Augostini, Ralph S / Hummel, John D / Daoud, Emile G

    Journal of cardiovascular electrophysiology

    2021  Volume 32, Issue 11, Page(s) 3027–3034

    Abstract: ... ICD) placement. We sought to compare 10 J shock impedance in sinus rhythm (SR) with 65 J ... Standard DT with 65 J shock and 10 J shock in SR were performed unless contraindicated. The PRAETORIAN ... n = 26 [70.3%], body mass index: 30.1 ± 6.7 kg/m: Conclusion: We demonstrated that 10 J shock ...

    Abstract Introduction: Defibrillation testing (DT) is recommended during the subcutaneous defibrillator (S-ICD) placement. We sought to compare 10 J shock impedance in sinus rhythm (SR) with 65 J defibrillation impedance and evaluate device position on a postimplant chest X-ray (CXR) using an intermuscular (IM) technique.
    Methods: Consecutive S-ICD implantations between 12/2019 and 12/2020 at The Ohio State University were reviewed. All implantations were performed using a two-incision IM technique. Standard DT with 65 J shock and 10 J shock in SR were performed unless contraindicated. The PRAETORIAN score was calculated based on CXR.
    Results: A total of 37 patients (age: 47.2 ± 15.8 years old, male: n = 26 [70.3%], body mass index: 30.1 ± 6.7 kg/m
    Conclusion: We demonstrated that 10 J shock impedance in SR correlated well with 65 J defibrillation impedance during IM S-ICD implantation. An IM implantation technique provides excellent generator location on postimplant CXR. The IM technique combined with 10 J shock in SR may be sufficient to predict and ensure the defibrillation efficacy of the S-ICD.
    MeSH term(s) Adult ; Arrhythmias, Cardiac ; Defibrillators, Implantable ; Electric Countershock ; Electric Impedance ; Humans ; Male ; Middle Aged ; Ohio ; Subcutaneous Tissue
    Language English
    Publishing date 2021-09-28
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1025989-2
    ISSN 1540-8167 ; 1045-3873
    ISSN (online) 1540-8167
    ISSN 1045-3873
    DOI 10.1111/jce.15249
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  7. Article ; Online: Probing Small Bjorken-x Nuclear Gluonic Structure via Coherent J/ψ Photoproduction in Ultraperipheral Pb-Pb Collisions at sqrt[s_{NN}]=5.02  TeV.

    Tumasyan, A / Adam, W / Andrejkovic, J W / Bergauer, T / Chatterjee, S / Damanakis, K / Dragicevic, M / Escalante Del Valle, A / Hussain, P S / Jeitler, M / Krammer, N / Lechner, L / Liko, D / Mikulec, I / Schieck, J / Schöfbeck, R / Schwarz, D / Sonawane, M / Templ, S /
    Waltenberger, W / Wulz, C-E / Darwish, M R / Janssen, T / Kello, T / Van Mechelen, P / Bols, E S / D'Hondt, J / De Moor, A / Delcourt, M / El Faham, H / Lowette, S / Morton, A / Müller, D / Sahasransu, A R / Tavernier, S / Van Doninck, W / Van Putte, S / Vannerom, D / Clerbaux, B / Dansana, S / De Lentdecker, G / Favart, L / Hohov, D / Jaramillo, J / Lee, K / Mahdavikhorrami, M / Makarenko, I / Malara, A / Paredes, S / Pétré, L / Postiau, N / Thomas, L / Vanden Bemden, M / Vander Velde, C / Vanlaer, P / Dobur, D / Knolle, J / Lambrecht, L / Mestdach, G / Rendón, C / Samalan, A / Skovpen, K / Tytgat, M / Van Den Bossche, N / Vermassen, B / Wezenbeek, L / Benecke, A / Bruno, G / Bury, F / Caputo, C / David, P / Delaere, C / Donertas, I S / Giammanco, A / Jaffel, K / Jain, Sa / Lemaitre, V / Lidrych, J / Mondal, K / Tran, T T / Vischia, P / Wertz, S / Alves, G A / Coelho, E / Hensel, C / Moraes, A / Rebello Teles, P / Aldá Júnior, W L / Alves Gallo Pereira, M / Barroso Ferreira Filho, M / Brandao Malbouisson, H / Carvalho, W / Chinellato, J / Da Costa, E M / Da Silveira, G G / De Jesus Damiao, D / Dos Santos Sousa, V / Fonseca De Souza, S / Martins, J / Mora Herrera, C / Mota Amarilo, K / Mundim, L / Nogima, H / Santoro, A / Silva Do Amaral, S M / Sznajder, A / Thiel, M / Vilela Pereira, A / Bernardes, C A / Calligaris, L / Tomei, T R Fernandez Perez / Gregores, E M / Mercadante, P G / Novaes, S F / Padula, Sandra S / Aleksandrov, A / Antchev, G / Hadjiiska, R / Iaydjiev, P / Misheva, M / Rodozov, M / Shopova, M / Sultanov, G / Dimitrov, A / Ivanov, T / Litov, L / Pavlov, B / Petkov, P / Petrov, A / Shumka, E / Keshri, S / Thakur, S / Cheng, T / Guo, Q / Javaid, T / Mittal, M / Yuan, L / Bauer, G / Hu, Z / Lezki, S / Yi, K / Chen, G M / Chen, H S / Chen, M / Iemmi, F / Jiang, C H / Kapoor, A / Liao, H / Liu, Z-A / Milosevic, V / Monti, F / Sharma, R / Tao, J / Wang, J / Zhang, H / Zhao, J / Agapitos, A / Ban, Y / Carvalho Antunes De Oliveira, A / Levin, A / Li, C / 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Brücken, E / Garcia, F / Havukainen, J / Kim, M S / Kinnunen, R / Lampén, T / Lassila-Perini, K / Lehti, S / Lindén, T / Lotti, M / Martikainen, L / Myllymäki, M / Rantanen, M M / Siikonen, H / Tuominen, E / Tuominiemi, J / Luukka, P / Petrow, H / Tuuva, T / Amendola, C / Besancon, M / Couderc, F / Dejardin, M / Denegri, D / Faure, J L / Ferri, F / Ganjour, S / Gras, P / Hamel de Monchenault, G / Lohezic, V / Malcles, J / Rander, J / Rosowsky, A / Sahin, M Ö / Savoy-Navarro, A / Simkina, P / Titov, M / Baldenegro Barrera, C / Beaudette, F / Buchot Perraguin, A / Busson, P / Cappati, A / Charlot, C / Damas, F / Davignon, O / Diab, B / Falmagne, G / Fontana Santos Alves, B A / Ghosh, S / Granier de Cassagnac, R / Hakimi, A / Harikrishnan, B / Liu, G / Motta, J / Nguyen, M / Ochando, C / Portales, L / Salerno, R / Sarkar, U / Sauvan, J B / Sirois, Y / Tarabini, A / Vernazza, E / Zabi, A / Zghiche, A / Agram, J-L / Andrea, J / Apparu, D / Bloch, D / Brom, J-M / Chabert, E C / Collard, C / 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    Physical review letters

    2024  Volume 131, Issue 26, Page(s) 262301

    Abstract: ... of the gluonic structure of nuclei. The coherent J/ψ photoproduction cross section in ultraperipheral lead-lead ...

    Abstract Quasireal photons exchanged in relativistic heavy ion interactions are powerful probes of the gluonic structure of nuclei. The coherent J/ψ photoproduction cross section in ultraperipheral lead-lead collisions is measured as a function of photon-nucleus center-of-mass energies per nucleon (W_{γN}^{Pb}) over a wide range of 40<W_{γN}^{Pb}<400  GeV. Results are obtained using data at the nucleon-nucleon center-of-mass energy of 5.02 TeV collected by the CMS experiment at the CERN LHC, corresponding to an integrated luminosity of 1.52  nb^{-1}. The cross section is observed to rise rapidly at low W_{γN}^{Pb}, and plateau above W_{γN}^{Pb}≈40  GeV, up to 400  GeV, entering a new regime of small Bjorken-x (≈6×10^{-5}) gluons being probed in a heavy nucleus. The observed energy dependence is not predicted by current quantum chromodynamic models.<br />
    Language English
    Publishing date 2024-01-12
    Publishing country United States
    Document type Journal Article
    ZDB-ID 208853-8
    ISSN 1079-7114 ; 0031-9007
    ISSN (online) 1079-7114
    ISSN 0031-9007
    DOI 10.1103/PhysRevLett.131.262301
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Book: Phytopharmacology and therapeutic values / 2 / J. N. Govil ...

    Singh, V. K. / Govil, J. N.

    (Recent progress in medicinal plants ; 20)

    2008  

    Series title Recent progress in medicinal plants ; 20
    Phytopharmacology and therapeutic values
    Collection Phytopharmacology and therapeutic values
    Language English
    Size 462 S. : Ill., graph. Darst.
    Publisher Studium Press
    Publishing place Houston, Tx
    Publishing country United States
    Document type Book
    HBZ-ID HT015029770
    ISBN 1-9336991-0-8 ; 978-1-9336991-0-3
    Database Catalogue ZB MED Medicine, Health

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    Shelf markLoan statusLocation
    2008 A 5009 order for loan Magazin

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  9. Article ; Online: Subcellular localization of the J-protein Sis1 regulates the heat shock response.

    Feder, Zoë A / Ali, Asif / Singh, Abhyudai / Krakowiak, Joanna / Zheng, Xu / Bindokas, Vytas P / Wolfgeher, Donald / Kron, Stephen J / Pincus, David

    The Journal of cell biology

    2020  Volume 220, Issue 1

    Abstract: ... and the HSR is unclear. Here we show that localization of the J-protein Sis1, a cofactor ...

    Abstract Cells exposed to heat shock induce a conserved gene expression program, the heat shock response (HSR), encoding protein homeostasis (proteostasis) factors. Heat shock also triggers proteostasis factors to form subcellular quality control bodies, but the relationship between these spatial structures and the HSR is unclear. Here we show that localization of the J-protein Sis1, a cofactor for the chaperone Hsp70, controls HSR activation in yeast. Under nonstress conditions, Sis1 is concentrated in the nucleoplasm, where it promotes Hsp70 binding to the transcription factor Hsf1, repressing the HSR. Upon heat shock, Sis1 forms an interconnected network with other proteostasis factors that spans the nucleolus and the surface of the endoplasmic reticulum. We propose that localization of Sis1 to this network directs Hsp70 activity away from Hsf1 in the nucleoplasm, leaving Hsf1 free to induce the HSR. In this manner, Sis1 couples HSR activation to the spatial organization of the proteostasis network.
    MeSH term(s) Cell Nucleolus/metabolism ; Cell Nucleus/metabolism ; Cytosol/metabolism ; DNA-Binding Proteins/metabolism ; Endoplasmic Reticulum/metabolism ; Gene Expression Regulation, Fungal ; HSP40 Heat-Shock Proteins/metabolism ; HSP70 Heat-Shock Proteins/metabolism ; Heat-Shock Proteins/metabolism ; Heat-Shock Response ; Models, Biological ; Molecular Chaperones/metabolism ; Mutation/genetics ; Proteasome Endopeptidase Complex/metabolism ; Protein Binding ; Protein Transport ; Proteostasis ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/metabolism ; Subcellular Fractions/metabolism ; Transcription Factors/metabolism ; Transcriptome/genetics
    Chemical Substances DNA-Binding Proteins ; HSF1 protein, S cerevisiae ; HSP40 Heat-Shock Proteins ; HSP70 Heat-Shock Proteins ; Heat-Shock Proteins ; Molecular Chaperones ; SIS1 protein, S cerevisiae ; Saccharomyces cerevisiae Proteins ; Transcription Factors ; Proteasome Endopeptidase Complex (EC 3.4.25.1)
    Language English
    Publishing date 2020-12-17
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 218154-x
    ISSN 1540-8140 ; 0021-9525
    ISSN (online) 1540-8140
    ISSN 0021-9525
    DOI 10.1083/jcb.202005165
    Database MEDical Literature Analysis and Retrieval System OnLINE

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    ab Jg. 2022: Lesesaal (EG)

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  10. Article ; Online: Antheraea proylei J. Sericin Induces Apoptosis in a Caspase-Dependent Manner in A549 and HeLa Cells.

    Jolly Devi, Potsangbam / Robinson Singh, Asem / Tarundas Singh, Naorem / Rupachandra Singh, Laishram / Kunjeshwori Devi, Sanjenbam / Shanjukumar Singh, Lisam

    Anti-cancer agents in medicinal chemistry

    2023  

    Abstract: ... of sericin from cocoons of Antheraea proylei J (SAP) against human lung cancer (A549) and cervical cancer ... HeLa) cell lines. This is the first report of anti-cancer activity of the non-mulberry silkworm A. proylei J ... of A. proylei J. by the process of the degumming method. Cytotoxicity activity was assessed by MTT assay, and ...

    Abstract Aims: To investigate the anticancer activity of sericin preparation from cocoons of A. proylei.
    Background: In spite of much progress in cancer, the global cancer burden is still significant and increasing. Sericin, an adhesive protein of silk cocoons, has been shown to be a potential protein in various biomedical applications, including cancer therapeutics. The present study evaluates the anticancer property of sericin from cocoons of Antheraea proylei J (SAP) against human lung cancer (A549) and cervical cancer (HeLa) cell lines. This is the first report of anti-cancer activity of the non-mulberry silkworm A. proylei J.
    Objective: Establish the antiproliferative potential of SAP. 2. Identify the molecular mechanism of cell death induced by SAP on two different cell lines.
    Method: SAP was prepared from cocoons of A. proylei J. by the process of the degumming method. Cytotoxicity activity was assessed by MTT assay, and genotoxicity activity was assessed by comet assay. Cleavage of caspase and PARP proteins and phosphorylation of MAPK pathway members were analysed by Western blotting. Cell cycle analysis was done by flow cytometer.
    Result: SAP causes cytotoxicity to A549 and HeLa cell lines with the IC50 values 3.8 and 3.9 µg/µl respectively. SAP induces apoptosis in a dose-dependent manner through caspase-3 and p38, MAPK pathways in A549 and HeLa cells. Moreover, in A549 and HeLa cells, SAP induces cell cycle arrest at the S phase in a dose-dependent manner.
    Conclusion: The difference in the molecular mechanisms of apoptosis induced by SAP in A549 and HeLa cell lines may be due to the difference in the genotypes of the cancer cell lines. However, further investigation is warranted. The overall results of the present study envisage the possibility of using SAP as an anti-tumorigenic agent.
    Language English
    Publishing date 2023-03-29
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2217610-X
    ISSN 1875-5992 ; 1871-5206
    ISSN (online) 1875-5992
    ISSN 1871-5206
    DOI 10.2174/1871520623666230329123437
    Database MEDical Literature Analysis and Retrieval System OnLINE

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