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  1. Article ; Online: Cyclophilin D knockout significantly prevents HCC development in a streptozotocin-induced mouse model of diabetes-linked NASH.

    Stauffer, Winston T / Bobardt, Michael / Ure, Daren R / Foster, Robert T / Gallay, Philippe

    PloS one

    2024  Volume 19, Issue 4, Page(s) e0301711

    Abstract: ... several cyclophilin isoforms, among which cyclophilin D (CypD) has not been previously investigated in this context ...

    Abstract A family of Peptidyl-prolyl isomerases (PPIases), called Cyclophilins, localize to numerous intracellular and extracellular locations where they contribute to a variety of essential functions. We previously reported that non-immunosuppressive pan-cyclophilin inhibitor drugs like reconfilstat (CRV431) or NV556 decreased multiple aspects of non-alcoholic fatty liver disease (NAFLD) in mice under two different non-alcoholic steatohepatitis (NASH) mouse models. Both CRV431 and NV556 inhibit several cyclophilin isoforms, among which cyclophilin D (CypD) has not been previously investigated in this context. It is unknown whether it is necessary to simultaneously inhibit multiple cyclophilin family members to achieve therapeutic benefits or if loss-of-function of one is sufficient. Furthermore, narrowing down the isoform most responsible for a particular aspect of NAFLD/NASH, such as hepatocellular carcinoma (HCC), would allow for more precise future therapies. Features of human diabetes-linked NAFLD/NASH can be reliably replicated in mice by administering a single high dose of streptozotocin to disrupt pancreatic beta cells, in conjunction with a high sugar, high fat, high cholesterol western diet over the course of 30 weeks. Here we show that while both wild-type (WT) and Ppif-/- CypD KO mice develop multipe severe NASH disease features under this model, the formation of HCC nodules was significantly blunted only in the CypD KO mice. Furthermore, of differentially expressed transcripts in a qPCR panel of select HCC-related genes, nearly all were downregulated in the CypD KO background. Cyclophilin inhibition is a promising and novel avenue of treatment for diet-induced NAFLD/NASH. This study highlights the impact of CypD loss-of-function on the development of HCC, one of the most severe disease outcomes.
    MeSH term(s) Animals ; Humans ; Mice ; Carcinoma, Hepatocellular/genetics ; Carcinoma, Hepatocellular/prevention & control ; Carcinoma, Hepatocellular/pathology ; Cyclophilins/genetics ; Diabetes Mellitus/pathology ; Diet, High-Fat ; Disease Models, Animal ; Liver/pathology ; Liver Neoplasms/genetics ; Liver Neoplasms/prevention & control ; Liver Neoplasms/drug therapy ; Mice, Inbred C57BL ; Non-alcoholic Fatty Liver Disease/pathology ; Peptidyl-Prolyl Isomerase F ; Streptozocin
    Chemical Substances Cyclophilins (EC 5.2.1.-) ; Peptidyl-Prolyl Isomerase F ; Streptozocin (5W494URQ81) ; PPIF protein, mouse
    Language English
    Publishing date 2024-04-04
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2267670-3
    ISSN 1932-6203 ; 1932-6203
    ISSN (online) 1932-6203
    ISSN 1932-6203
    DOI 10.1371/journal.pone.0301711
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Peripheral Endothelial Function After Arterial Switch Operation for D-looped Transposition of the Great Arteries.

    Sun, Heather Y / Stauffer, Katie Jo / Nourse, Susan E / Vu, Chau / Selamet Tierney, Elif Seda

    Pediatric cardiology

    2017  Volume 38, Issue 5, Page(s) 1010–1015

    Abstract: Coronary artery re-implantation during arterial switch operation in patients with D-looped ... transposition of the great arteries (D-TGA) can alter coronary arterial flow and increase shear stress, leading ... tested if, compared to healthy controls, patients with D-TGA after arterial switch operation had ...

    Abstract Coronary artery re-implantation during arterial switch operation in patients with D-looped transposition of the great arteries (D-TGA) can alter coronary arterial flow and increase shear stress, leading to local endothelial dysfunction, although prior studies have conflicting results. Endothelial pulse amplitude testing can predict coronary endothelial dysfunction by peripheral arterial testing. This study tested if, compared to healthy controls, patients with D-TGA after arterial switch operation had peripheral endothelial dysfunction. Patient inclusion criteria were (1) D-TGA after neonatal arterial switch operation; (2) age 9-29 years; (3) absence of known cardiovascular risk factors such as hypertension, diabetes, hypercholesterolemia, vascular disease, recurrent vasovagal syncope, and coronary artery disease; and (4) ability to comply with overnight fasting. Exclusion criteria included (1) body mass index ≥85th percentile, (2) use of medications affecting vascular tone, or (3) acute illness. We assessed endothelial function by endothelial pulse amplitude testing and compared the results to our previously published data in healthy controls (n = 57). We tested 20 D-TGA patients (16.4 ± 4.8 years old) who have undergone arterial switch operation at a median age of 5 days (0-61 days). Endothelial pulse amplitude testing indices were similar between patients with D-TGA and controls (1.78 ± 0.61 vs. 1.73 ± 0.54, p = 0.73).In our study population of children and young adults, there was no evidence of peripheral endothelial dysfunction in patients with D-TGA who have undergone arterial switch operation. Our results support the theory that coronary arterial wall thickening and abnormal vasodilation reported in these patients is a localized phenomenon and not reflective of overall atherosclerotic burden.
    MeSH term(s) Adolescent ; Arterial Switch Operation/adverse effects ; Child ; Coronary Artery Disease/etiology ; Coronary Artery Disease/physiopathology ; Coronary Vessels/physiopathology ; Endothelium, Vascular/physiopathology ; Humans ; Peripheral Vascular Diseases/diagnosis ; Peripheral Vascular Diseases/etiology ; Peripheral Vascular Diseases/physiopathology ; Transposition of Great Vessels/physiopathology ; Transposition of Great Vessels/surgery ; Young Adult
    Language English
    Publishing date 2017-06
    Publishing country United States
    Document type Journal Article
    ZDB-ID 800857-7
    ISSN 1432-1971 ; 0172-0643
    ISSN (online) 1432-1971
    ISSN 0172-0643
    DOI 10.1007/s00246-017-1609-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Identification of a 5-[3-phenyl-(2-cyclic-ether)-methylether]-4-aminopyrrolo[2,3-d]pyrimidine series of IGF-1R inhibitors.

    Stauffer, Frédéric / Cowan-Jacob, Sandra W / Scheufler, Clemens / Furet, Pascal

    Bioorganic & medicinal chemistry letters

    2016  Volume 26, Issue 8, Page(s) 2065–2067

    Abstract: We report structure-guided modifications of the benzyloxy substituent of the Insulin-like Growth Factor-1 Receptor (IGF-1R) inhibitor NVP-AEW541. This chemical group has been shown to confer selectivity against other protein kinases but at the expense of ...

    Abstract We report structure-guided modifications of the benzyloxy substituent of the Insulin-like Growth Factor-1 Receptor (IGF-1R) inhibitor NVP-AEW541. This chemical group has been shown to confer selectivity against other protein kinases but at the expense of a metabolism liability. X-ray crystallography has revealed that the benzyloxy moiety interacts with a lysine cation of the IGF-1R kinase domain via its ether function and its aromatic π-system and is nicely embedded in an induced hydrophobic pocket. We show that 1,4-diethers displaying an adequate hydrophobic and constrained shape are advantageous benzyloxy replacements. A single digit nanomolar inhibitor (compound 20, IC50=8.9 nM) was identified following this approach.
    MeSH term(s) Crystallography, X-Ray ; Dose-Response Relationship, Drug ; Humans ; Microsomes, Liver/chemistry ; Microsomes, Liver/metabolism ; Models, Molecular ; Molecular Structure ; Protein Kinase Inhibitors/chemical synthesis ; Protein Kinase Inhibitors/chemistry ; Protein Kinase Inhibitors/pharmacology ; Pyrimidines/chemical synthesis ; Pyrimidines/chemistry ; Pyrimidines/pharmacology ; Pyrroles/chemical synthesis ; Pyrroles/chemistry ; Pyrroles/pharmacology ; Receptor, IGF Type 1/antagonists & inhibitors ; Receptor, IGF Type 1/metabolism ; Structure-Activity Relationship
    Chemical Substances 5-(3-phenyl-(2-cyclic-ether)-methylether)-4-aminopyrrolo(2,3-d)pyrimidine ; NVP-AEW541 ; Protein Kinase Inhibitors ; Pyrimidines ; Pyrroles ; Receptor, IGF Type 1 (EC 2.7.10.1)
    Language English
    Publishing date 2016-04-15
    Publishing country England
    Document type Journal Article
    ZDB-ID 1063195-1
    ISSN 1464-3405 ; 0960-894X
    ISSN (online) 1464-3405
    ISSN 0960-894X
    DOI 10.1016/j.bmcl.2016.02.074
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: A new assisted molecular cycloaddition on boron doped silicon surfaces: a predictive DFT-D study.

    Boukari, Khaoula / Duverger, Eric / Stauffer, Louise / Sonnet, Philippe

    Physical chemistry chemical physics : PCCP

    2014  Volume 16, Issue 24, Page(s) 12164–12171

    Abstract: In the framework of the Density Functional Theory (DFT-D), we investigate the phthalocyanine (H2Pc ...

    Abstract In the framework of the Density Functional Theory (DFT-D), we investigate the phthalocyanine (H2Pc) molecule adsorption on SiC(0001)3 × 3 and Si(111)√3 × √3R30°-B (SiB) surfaces, and particularly compare the involved molecular adsorptions. In the H2Pc-SiC(0001)3 × 3 system, the molecular adsorption can be ascribed to a [10+2] cycloaddition. The H2Pc-SiB system is considered in three cases: defectless SiB surface (denoted SiB-0D) and SiB surfaces presenting one or two boron defects (denoted SiB-1D and SiB-2D respectively). The SiB-0D surface is passivated by a charge transfer from the Si adatoms to the boron atoms and therefore no chemical bond between the molecule and the substrate is observed. A similar molecular adsorption as already evidenced in the H2Pc-SiC(0001)3 × 3 system is involved in the SiB-2D case. In the case of the SiB-1D surface, two Si-N bonds (Si1-N1 and Si2-N2) are observed. One of them, Si1-N1, is nearly similar to that found in the H2Pc-SiB-2D system, but the Si2-N2 bond is unexpected. The Bader charge analysis suggests that, in the presence of the H2Pc molecule, the boron atoms behave like an electron reservoir whose availability varies following the involved molecular adsorption process. In the SiB-1D case, charges are transferred from the substrate to the molecule, allowing the Si2-N2 bond formation. Such a kind of molecular adsorption, not yet observed, could be designed by "assisted pseudo cycloaddition".
    Language English
    Publishing date 2014-06-28
    Publishing country England
    Document type Journal Article
    ZDB-ID 1476244-4
    ISSN 1463-9084 ; 1463-9076
    ISSN (online) 1463-9084
    ISSN 1463-9076
    DOI 10.1039/c4cp00839a
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: A TOX-ic axis of epigenetic stem cell maintenance and chemoresistance in colon cancer.

    Hubert, Christopher G / Stauffer, Shaun R / Lathia, Justin D

    PLoS biology

    2023  Volume 21, Issue 9, Page(s) e3002295

    Abstract: Cancer stem cells drive tumor growth and survival via self-renewal and therapeutic resistance, but the upstream mechanisms are not well defined. In this issue of PLOS Biology, a study in colon cancer reveals a new signalling network that links epigenetic ...

    Abstract Cancer stem cells drive tumor growth and survival via self-renewal and therapeutic resistance, but the upstream mechanisms are not well defined. In this issue of PLOS Biology, a study in colon cancer reveals a new signalling network that links epigenetic regulation to these phenotypes.
    MeSH term(s) Humans ; Drug Resistance, Neoplasm/genetics ; Epigenesis, Genetic ; Colonic Neoplasms/drug therapy ; Colonic Neoplasms/genetics ; Neoplastic Stem Cells ; Phenotype ; ATP Binding Cassette Transporter, Subfamily G, Member 2 ; Neoplasm Proteins ; Intracellular Signaling Peptides and Proteins
    Chemical Substances ABCG2 protein, human ; ATP Binding Cassette Transporter, Subfamily G, Member 2 ; Neoplasm Proteins ; WDR5 protein, human ; Intracellular Signaling Peptides and Proteins
    Language English
    Publishing date 2023-09-15
    Publishing country United States
    Document type Journal Article ; Comment
    ZDB-ID 2126776-5
    ISSN 1545-7885 ; 1544-9173
    ISSN (online) 1545-7885
    ISSN 1544-9173
    DOI 10.1371/journal.pbio.3002295
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Nonparametric 1-D temperature restoration in lossy media using Tikhonov regularization on sparse radiometry data.

    Jacobsen, Svein / Stauffer, Paul R

    IEEE transactions on bio-medical engineering

    2003  Volume 50, Issue 2, Page(s) 178–188

    Abstract: ... studied using Galerkin expansion of one-dimensional (1-D) temperature profiles combined with Tikhonov ... of the 1-D temperature profile increases, more radiometric bands (5-6) are required to provide nonbiased ...

    Abstract Microwave thermometry has the potential to characterize thermal gradients in lossy materials down to a few centimeters depth. The problem of retrieving temperature profiles from sets of brightness temperatures is studied using Galerkin expansion of one-dimensional (1-D) temperature profiles combined with Tikhonov regularization and predefined boundary conditions. From a priori knowledge of the temperature field shape, smooth Chebyshev polynomials are used as basis functions in the series expansion. The proposed estimator does not require iterative calculations that are normally performed using conventional numerical methods for signal parameter estimation and is, thus, very fast. Noise effects versus bandwidth limitations (smoothness of solutions) are studied in terms of four performance indexes defined in the text. In general, statistical spread of the temperature estimator increases with increasing number of Chebyshev polynomials. Systematic deviation from true values (bias) decreases as the number of Chebyshev polynomials increases. Results show that smooth temperature profiles can be reproduced using 6-7 Chebyshev polynomials. With additional constraints such as boundary conditions and maxima localization, a three-frequency-band radiometric scan is sufficient to produce acceptable results in regions with low thermal gradients. As the spatial variability of the 1-D temperature profile increases, more radiometric bands (5-6) are required to provide nonbiased estimates.
    MeSH term(s) Algorithms ; Body Temperature/physiology ; Computer Simulation ; Microwaves ; Models, Biological ; Quality Control ; Radiometry/methods ; Reproducibility of Results ; Sensitivity and Specificity ; Stochastic Processes ; Thermography/methods
    Language English
    Publishing date 2003-02
    Publishing country United States
    Document type Comparative Study ; Evaluation Studies ; Journal Article
    ZDB-ID 160429-6
    ISSN 1558-2531 ; 0018-9294
    ISSN (online) 1558-2531
    ISSN 0018-9294
    DOI 10.1109/TBME.2002.807655
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: In situ SEM Micromechanical Testing of Engineered Coatings at Elevated Temperatures.

    Hintsala, Eric D / Johnson, Jasmine / Bhowmick, Sanjit / Stauffer, Douglas D

    Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada

    2023  Volume 29, Issue Supplement_1, Page(s) 1515

    Language English
    Publishing date 2023-08-23
    Publishing country England
    Document type Journal Article
    ZDB-ID 1385710-1
    ISSN 1435-8115 ; 1431-9276
    ISSN (online) 1435-8115
    ISSN 1431-9276
    DOI 10.1093/micmic/ozad067.779
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  8. Article ; Online: Tapping lipid droplets: A rich fat diet of intracellular bacterial pathogens.

    Hüsler, Dario / Stauffer, Pia / Hilbi, Hubert

    Molecular microbiology

    2023  Volume 120, Issue 2, Page(s) 194–209

    Abstract: Lipid droplets (LDs) are dynamic and versatile organelles present in most eukaryotic cells. LDs consist of a hydrophobic core of neutral lipids, a phospholipid monolayer coat, and a variety of associated proteins. LDs are formed at the endoplasmic ... ...

    Abstract Lipid droplets (LDs) are dynamic and versatile organelles present in most eukaryotic cells. LDs consist of a hydrophobic core of neutral lipids, a phospholipid monolayer coat, and a variety of associated proteins. LDs are formed at the endoplasmic reticulum and have diverse roles in lipid storage, energy metabolism, membrane trafficking, and cellular signaling. In addition to their physiological cellular functions, LDs have been implicated in the pathogenesis of several diseases, including metabolic disorders, cancer, and infections. A number of intracellular bacterial pathogens modulate and/or interact with LDs during host cell infection. Members of the genera Mycobacterium, Legionella, Coxiella, Chlamydia, and Salmonella exploit LDs as a source of intracellular nutrients and membrane components to establish their distinct intracellular replicative niches. In this review, we focus on the biogenesis, interactions, and functions of LDs, as well as on their role in lipid metabolism of intracellular bacterial pathogens.
    MeSH term(s) Lipid Droplets/metabolism ; Diet ; Lipid Metabolism
    Language English
    Publishing date 2023-07-10
    Publishing country England
    Document type Journal Article ; Review ; Research Support, Non-U.S. Gov't
    ZDB-ID 619315-8
    ISSN 1365-2958 ; 0950-382X
    ISSN (online) 1365-2958
    ISSN 0950-382X
    DOI 10.1111/mmi.15120
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  9. Article: Vitamin D and bone

    Baylink, D.J / Morey, E.R / Ivey, J.L / Stauffer, M.E

    Basic and clinical nutrition. 1980. v. 2

    1980  

    Keywords nutrition physiology ; human nutrition
    Language English
    Size p. 387-453., ill.
    Document type Article
    Note Literature review.
    Database NAL-Catalogue (AGRICOLA)

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  10. Article ; Online: Olanzapine plasma concentrations after treatment with 10, 20, and 40 mg/d in patients with schizophrenia: an analysis of correlations with efficacy, weight gain, and prolactin concentration.

    Citrome, Leslie / Stauffer, Virginia L / Chen, Lei / Kinon, Bruce J / Kurtz, Darcie L / Jacobson, Jennie G / Bergstrom, Richard F

    Journal of clinical psychopharmacology

    2009  Volume 29, Issue 3, Page(s) 278–283

    Abstract: ... on the pharmacokinetic characteristics of oral olanzapine up to 40 mg/d. Patients were randomly allocated to olanzapine ... 10, 20, or 40 mg/d for 8 weeks. Olanzapine concentrations in 634 samples from 380 patients were ... of doses up to 40 mg/d was generally consistent with prior findings in studies with fewer subjects and/or ...

    Abstract Objectives of the study were to evaluate the relationship between olanzapine plasma concentrations and efficacy, prolactin, and weight and to assess effects of smoking, sex, and race on the pharmacokinetic characteristics of oral olanzapine up to 40 mg/d. Patients were randomly allocated to olanzapine 10, 20, or 40 mg/d for 8 weeks. Olanzapine concentrations in 634 samples from 380 patients were analyzed. Mean sample collection time was approximately 15 hours after dose for all groups. Mean olanzapine concentrations were 19.7 +/- 11.4, 37.9 +/- 22.8, and 74.5 +/- 43.7 ng/mL for 10-, 20-, and 40-mg doses, respectively. Olanzapine concentration and Positive and Negative Syndrome Scale improvement were not significantly correlated. Change in both weight and prolactin showed significant dose response. Prolactin concentration was correlated with olanzapine concentration (r = 0.46, P < 0.001). No significant correlation between olanzapine concentration and weight change was observed. Olanzapine concentrations were lower in self-reported smokers (16.5 +/- 9.6, 34.2 +/- 20.8, and 60.9 +/- 34.6 ng/mL) than in self-reported nonsmokers (25.6 +/- 12.3, 43.4 +/- 24.7, and 113.2 +/- 44.0 ng/mL) for 10-, 20-, and 40-mg doses, respectively (P </= 0.022). In the 40-mg group only, African Americans had a lower mean olanzapine concentration than whites (65.6 +/- 44.1 and 84.8 +/- 44.1 ng/mL, respectively, P = 0.048). Women had numerically but not significantly higher mean olanzapine concentrations than men. In conclusion, olanzapine pharmacokinetics of doses up to 40 mg/<mark>d was generally consistent with prior findings in studies with fewer subjects and/or lower doses.
    MeSH term(s) Administration, Oral ; Adult ; African Americans ; Antipsychotic Agents/administration & dosage ; Antipsychotic Agents/adverse effects ; Antipsychotic Agents/pharmacokinetics ; Benzodiazepines/administration & dosage ; Benzodiazepines/adverse effects ; Benzodiazepines/pharmacokinetics ; Dose-Response Relationship, Drug ; European Continental Ancestry Group ; Female ; Humans ; Male ; Middle Aged ; Prolactin/blood ; Prolactin/drug effects ; Psychiatric Status Rating Scales ; Randomized Controlled Trials as Topic ; Schizophrenia/drug therapy ; Schizophrenic Psychology ; Sex Factors ; Smoking/adverse effects ; Weight Gain/drug effects
    Chemical Substances Antipsychotic Agents ; Benzodiazepines (12794-10-4) ; Prolactin (9002-62-4) ; olanzapine (N7U69T4SZR)
    Language English
    Publishing date 2009-06
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 604631-9
    ISSN 1533-712X ; 0271-0749
    ISSN (online) 1533-712X
    ISSN 0271-0749
    DOI 10.1097/JCP.0b013e3181a289cb
    Database MEDical Literature Analysis and Retrieval System OnLINE

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