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  1. Article ; Online: Ribosome heterogeneity and specialization of Plasmodium parasites.

    McGee, James P / Armache, Jean-Paul / Lindner, Scott E

    PLoS pathogens

    2023  Volume 19, Issue 4, Page(s) e1011267

    MeSH term(s) Animals ; Parasites ; Plasmodium/genetics ; Ribosomes
    Language English
    Publishing date 2023-04-13
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2205412-1
    ISSN 1553-7374 ; 1553-7374
    ISSN (online) 1553-7374
    ISSN 1553-7374
    DOI 10.1371/journal.ppat.1011267
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Long-Read Genome Assembly and Gene Model Annotations for the Rodent Malaria Parasite

    Godin, Mitchell J / Sebastian, Aswathy / Albert, Istvan / Lindner, Scott E

    bioRxiv : the preprint server for biology

    2023  

    Abstract: Malaria causes over 200 million infections and over 600 thousand fatalities each year, with most cases attributed to a human- ... ...

    Abstract Malaria causes over 200 million infections and over 600 thousand fatalities each year, with most cases attributed to a human-infectious
    Language English
    Publishing date 2023-01-07
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.01.06.523040
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Standard Selection Treatments with Sulfadiazine Limit Plasmodium yoelii Host-to-Vector Transmission.

    Rios, Kelly T / Dickson, Taylor M / Lindner, Scott E

    mSphere

    2022  Volume 7, Issue 3, Page(s) e0010622

    Abstract: Some antimalarial drugs that have lost clinical usefulness have been repurposed for experimental applications. One example is sulfadiazine, an analog ... ...

    Abstract Some antimalarial drugs that have lost clinical usefulness have been repurposed for experimental applications. One example is sulfadiazine, an analog of
    MeSH term(s) 4-Aminobenzoic Acid ; Animals ; Anopheles/parasitology ; Malaria/parasitology ; Mice ; Plasmodium yoelii ; Sulfadiazine/pharmacology ; Sulfadiazine/therapeutic use
    Chemical Substances Sulfadiazine (0N7609K889) ; 4-Aminobenzoic Acid (TL2TJE8QTX)
    Language English
    Publishing date 2022-05-19
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't ; Research Support, N.I.H., Extramural
    ISSN 2379-5042
    ISSN (online) 2379-5042
    DOI 10.1128/msphere.00106-22
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Ribosome heterogeneity and specialization of Plasmodium parasites.

    James P McGee / Jean-Paul Armache / Scott E Lindner

    PLoS Pathogens, Vol 19, Iss 4, p e

    2023  Volume 1011267

    Keywords Immunologic diseases. Allergy ; RC581-607 ; Biology (General) ; QH301-705.5
    Language English
    Publishing date 2023-04-01T00:00:00Z
    Publisher Public Library of Science (PLoS)
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Ribosome heterogeneity and specialization of Plasmodium parasites

    James P. McGee / Jean-Paul Armache / Scott E. Lindner

    PLoS Pathogens, Vol 19, Iss

    2023  Volume 4

    Keywords Immunologic diseases. Allergy ; RC581-607 ; Biology (General) ; QH301-705.5
    Language English
    Publishing date 2023-04-01T00:00:00Z
    Publisher Public Library of Science (PLoS)
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: Long-read genome assembly and gene model annotations for the rodent malaria parasite Plasmodium yoelii 17XNL.

    Godin, Mitchell J / Sebastian, Aswathy / Albert, Istvan / Lindner, Scott E

    The Journal of biological chemistry

    2023  Volume 299, Issue 7, Page(s) 104871

    Abstract: Malaria causes >600 thousand fatalities each year, with most cases attributed to the human-infectious Plasmodium falciparum species. Many rodent-infectious Plasmodium species, like Plasmodium berghei and Plasmodium yoelii, have been used as model species ...

    Abstract Malaria causes >600 thousand fatalities each year, with most cases attributed to the human-infectious Plasmodium falciparum species. Many rodent-infectious Plasmodium species, like Plasmodium berghei and Plasmodium yoelii, have been used as model species that can expedite studies of this pathogen. P. yoelii is an especially good model for investigating the mosquito and liver stages of development because key attributes closely resemble those of P. falciparum. Because of its importance, in 2002 the 17XNL strain of P. yoelii was the first rodent malaria parasite to be sequenced. Although this was a breakthrough effort, the assembly consisted of >5000 contiguous sequences that adversely impacted the annotated gene models. While other rodent malaria parasite genomes have been sequenced and annotated since then, including the related P. yoelii 17X strain, the 17XNL strain has not. As a result, genomic data for 17X has become the de facto reference genome for the 17XNL strain while leaving open questions surrounding possible differences between the 17XNL and 17X genomes. In this work, we present a high-quality genome assembly for P. yoelii 17XNL using PacBio DNA sequencing. In addition, we use Nanopore and Illumina RNA sequencing of mixed blood stages to create complete gene models that include coding sequences, alternate isoforms, and UTR designations. A comparison of the 17X and this new 17XNL assembly revealed biologically meaningful differences between the strains due to the presence of coding sequence variants. Taken together, our work provides a new genomic framework for studies with this commonly used rodent malaria model species.
    MeSH term(s) Animals ; Humans ; Plasmodium yoelii/genetics ; Parasites ; Rodentia ; Malaria/parasitology ; Liver
    Language English
    Publishing date 2023-05-27
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2997-x
    ISSN 1083-351X ; 0021-9258
    ISSN (online) 1083-351X
    ISSN 0021-9258
    DOI 10.1016/j.jbc.2023.104871
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Global Release of Translational Repression Across

    Rios, Kelly T / McGee, James P / Sebastian, Aswathy / Moritz, Robert L / Feric, Marina / Absalon, Sabrina / Swearingen, Kristian E / Lindner, Scott E

    bioRxiv : the preprint server for biology

    2024  

    Abstract: Malaria parasites must be able to respond quickly to changes in their environment, including during their transmission between mammalian hosts and mosquito vectors. Therefore, before transmission, female gametocytes proactively produce and ... ...

    Abstract Malaria parasites must be able to respond quickly to changes in their environment, including during their transmission between mammalian hosts and mosquito vectors. Therefore, before transmission, female gametocytes proactively produce and translationally repress mRNAs that encode essential proteins that the zygote requires to establish a new infection. This essential regulatory control requires the orthologues of DDX6 (DOZI), LSM14a (CITH), and ALBA proteins to form a translationally repressive complex in female gametocytes that associates with many of the affected mRNAs. However, while the release of translational repression of individual mRNAs has been documented, the details of the global release of translational repression have not. Moreover, the changes in spatial arrangement and composition of the DOZI/CITH/ALBA complex that contribute to translational control are also not known. Therefore, we have conducted the first quantitative, comparative transcriptomics and DIA-MS proteomics of
    Language English
    Publishing date 2024-03-16
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2024.02.01.577866
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Protein-RNA interactions important for Plasmodium transmission.

    Rios, Kelly T / Lindner, Scott E

    PLoS pathogens

    2019  Volume 15, Issue 12, Page(s) e1008095

    MeSH term(s) Animals ; Humans ; Malaria/metabolism ; Malaria/transmission ; Plasmodium/metabolism ; Plasmodium/pathogenicity ; Protozoan Proteins/metabolism ; RNA, Protozoan/metabolism
    Chemical Substances Protozoan Proteins ; RNA, Protozoan
    Language English
    Publishing date 2019-12-26
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Review
    ZDB-ID 2205412-1
    ISSN 1553-7374 ; 1553-7366
    ISSN (online) 1553-7374
    ISSN 1553-7366
    DOI 10.1371/journal.ppat.1008095
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Physical compatibility of Normosol-R with critical care medications used in patients with COVID-19 during simulated Y-site administration.

    Holyk, Amanda A / Lindner, Alexandra H / Lindner, Scott E / Shippert, Brian W

    American journal of health-system pharmacy : AJHP : official journal of the American Society of Health-System Pharmacists

    2021  Volume 79, Issue 1, Page(s) e27–e33

    Abstract: Purpose: Guidelines from the National Institutes of Health support the use of balanced crystalloid solutions such as Normosol-R (Hospira, Lake Forest, IL) for patients with coronavirus disease 2019 (COVID-19). However, their clinical utility is hindered ...

    Abstract Purpose: Guidelines from the National Institutes of Health support the use of balanced crystalloid solutions such as Normosol-R (Hospira, Lake Forest, IL) for patients with coronavirus disease 2019 (COVID-19). However, their clinical utility is hindered by a lack of Y-site compatibility data that is essential for use in patients with limited intravenous access. The objective of this study was to determine the physical compatibility of selected intensive care unit medications with Normosol-R.
    Methods: The study involved laboratory simulation of Y-site compatibility. Medications tested included amiodarone, caspofungin, dexmedetomidine, dobutamine, dopamine, epinephrine, levofloxacin, norepinephrine, pantoprazole, phenylephrine, piperacillin/tazobactam, vancomycin, and vasopressin. Tests performed were visual assessment with Tyndall light, turbidity measurement, and pH assessment. Tests were performed immediately after mixing (with the exception of turbidity testing) and after 1 hour and 4 hours.
    Results: Incompatibility was defined as observation of haze, gas, particulate, or color change or admixture turbidity above 0.3 or above 0.5 nephelometric turbidity unit (NTU), depending on whether the baseline turbidity was less than or greater than 0.5 NTU, respectively. Analysis of solubility and compatibility based on change from baseline to admixture pH in relation to the reported -log of the acid dissociation constant (pKa) was performed. There was no evidence of visual incompatibility for any of the admixtures when mixed with Normosol-R. Turbidity exceeded the defined threshold with pantoprazole, phenylephrine, and highly concentrated norepinephrine. Pantoprazole was the only test medication with a significant pH change when compared to its pKa.
    Conclusion: Normosol-R is compatible for Y-site administration with all tested medications except for pantoprazole, phenylephrine, and highly concentrated norepinephrine, allowing for potential increased use in patients with COVID-19.
    MeSH term(s) COVID-19 ; Critical Care ; Humans ; Nephelometry and Turbidimetry ; Physical Examination ; SARS-CoV-2 ; United States
    Language English
    Publishing date 2021-07-27
    Publishing country England
    Document type Journal Article
    ZDB-ID 1224627-x
    ISSN 1535-2900 ; 1079-2082
    ISSN (online) 1535-2900
    ISSN 1079-2082
    DOI 10.1093/ajhp/zxab329
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: CD4 T Cell-Derived IL-21 Is Critical for Sustaining Plasmodium Infection-Induced Germinal Center Responses and Promoting the Selection of Memory B Cells with Recall Potential.

    Johnson, Jordan T / Surette, Fionna A / Ausdal, Graham R / Shah, Manan / Minns, Allen M / Lindner, Scott E / Zander, Ryan A / Butler, Noah S

    Journal of immunology (Baltimore, Md. : 1950)

    2024  Volume 212, Issue 9, Page(s) 1467–1478

    Abstract: Development of Plasmodium-specific humoral immunity is critically dependent on CD4 Th cell responses and germinal center (GC) reactions during blood-stage Plasmodium infection. IL-21, a cytokine primarily produced by CD4 T cells, is an essential ... ...

    Abstract Development of Plasmodium-specific humoral immunity is critically dependent on CD4 Th cell responses and germinal center (GC) reactions during blood-stage Plasmodium infection. IL-21, a cytokine primarily produced by CD4 T cells, is an essential regulator of affinity maturation, isotype class-switching, B cell differentiation, and maintenance of GC reactions in response to many infection and immunization models. In models of experimental malaria, mice deficient in IL-21 or its receptor IL-21R fail to develop memory B cell populations and are not protected against secondary infection. However, whether sustained IL-21 signaling in ongoing GCs is required for maintaining GC magnitude, organization, and output is unclear. In this study, we report that CD4+ Th cells maintain IL-21 expression after resolution of primary Plasmodium yoelii infection. We generated an inducible knockout mouse model that enabled cell type-specific and timed deletion of IL-21 in peripheral, mature CD4 T cells. We found that persistence of IL-21 signaling in active GCs had no impact on the magnitude of GC reactions or their capacity to produce memory B cell populations. However, the memory B cells generated in the absence of IL-21 exhibited reduced recall function upon challenge. Our data support that IL-21 prevents premature cellular dissolution within the GC and promotes stringency of selective pressures during B cell fate determination required to produce high-quality Plasmodium-specific memory B cells. These data are additionally consistent with a temporal requirement for IL-21 in fine-tuning humoral immune memory responses during experimental malaria.
    MeSH term(s) Animals ; Mice ; B-Lymphocytes ; CD4-Positive T-Lymphocytes/metabolism ; Germinal Center/immunology ; Germinal Center/metabolism ; Interleukins ; Malaria/immunology ; Memory B Cells/immunology ; Mice, Inbred C57BL ; Plasmodium/immunology
    Chemical Substances interleukin-21 (MKM3CA6LT1) ; Interleukins
    Language English
    Publishing date 2024-03-13
    Publishing country United States
    Document type Journal Article
    ZDB-ID 3056-9
    ISSN 1550-6606 ; 0022-1767 ; 1048-3233 ; 1047-7381
    ISSN (online) 1550-6606
    ISSN 0022-1767 ; 1048-3233 ; 1047-7381
    DOI 10.4049/jimmunol.2300683
    Database MEDical Literature Analysis and Retrieval System OnLINE

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