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  1. Article ; Online: Healthy Aging in Times of Extreme Temperatures: Biomedical Approaches.

    Kowald, Axel / Palmer, Daniel / Secci, Riccardo / Fuellen, Georg

    Aging and disease

    2024  Volume 15, Issue 2, Page(s) 601–611

    Abstract: Climate extremes and rising energy prices present interconnected global health risks. Technical solutions can be supplemented with biomedical approaches to promote healthy longevity in hot and cold conditions. In summer, reducing basal metabolic rate ... ...

    Abstract Climate extremes and rising energy prices present interconnected global health risks. Technical solutions can be supplemented with biomedical approaches to promote healthy longevity in hot and cold conditions. In summer, reducing basal metabolic rate through mild caloric restriction or CR mimetics, such as resveratrol, can potentially be used to lower body temperature. In winter, activating brown adipose tissue (BAT) for non-shivering thermogenesis and improved metabolic health can help adaptation to colder environments. Catechins found in green tea and in other food could be alternatives to drugs for these purposes. This review examines and discusses the biomedical evidence supporting the use of CR mimetics and BAT activators for health benefits amid increasingly extreme temperatures.
    MeSH term(s) Healthy Aging ; Temperature ; Adipose Tissue, Brown/metabolism ; Tea/metabolism ; Cold Temperature
    Chemical Substances Tea
    Language English
    Publishing date 2024-04-01
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 2625789-0
    ISSN 2152-5250 ; 2152-5250
    ISSN (online) 2152-5250
    ISSN 2152-5250
    DOI 10.14336/AD.2023.0619
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Gene Expression Data for Investigating Glaucoma Treatment Options and Pharmacology in the Anterior Segment, State-of-the-Art and Future Directions.

    Fuellen, Georg / Jünemann, Anselm

    Frontiers in neuroscience

    2022  Volume 16, Page(s) 912043

    Abstract: Glaucoma treatment options as well as its etiology are far from understood. Gene expression (transcriptomics) data of the anterior segment of the eye can help by elucidating the molecular-mechanistic underpinnings, and we present an up-to-date ... ...

    Abstract Glaucoma treatment options as well as its etiology are far from understood. Gene expression (transcriptomics) data of the anterior segment of the eye can help by elucidating the molecular-mechanistic underpinnings, and we present an up-to-date description and discussion of what gene expression data are publicly available, and for which purposes these can be used. We feature the few resources covering all segments of the eye, and we then specifically focus on the anterior segment, and provide an extensive list of the Gene Expression Omnibus data that may be useful. We also feature single-cell data of relevance, particularly three datasets from tissues of relevance to aqueous humor outflow. We describe how the data have been used by researchers, by following up resource citations and data re-analyses. We discuss datasets and analyses pertaining to fibrosis following glaucoma surgery, and to glaucoma resulting from the use of steroids. We conclude by pointing out the current lack and underutilization of ocular gene expression data, and how the state of the art is expected to improve in the future.
    Language English
    Publishing date 2022-06-08
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2411902-7
    ISSN 1662-453X ; 1662-4548
    ISSN (online) 1662-453X
    ISSN 1662-4548
    DOI 10.3389/fnins.2022.912043
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Proposing candidate genes under telomeric control based on cross-species position data.

    Projahn, Elias F / Fuellen, Georg / Walter, Michael / Möller, Steffen

    NAR genomics and bioinformatics

    2024  Volume 6, Issue 2, Page(s) lqae037

    Abstract: In this paper, we present a comprehensive computational framework aimed at suggesting genes whose transcriptional regulation is likely to be influenced by their chromosomal position. This framework provides a user-friendly web interface, enabling ... ...

    Abstract In this paper, we present a comprehensive computational framework aimed at suggesting genes whose transcriptional regulation is likely to be influenced by their chromosomal position. This framework provides a user-friendly web interface, enabling researchers to explore the positional properties of all human genes and their orthologs across species, with a focus on their relation to the telomeres. Our approach involves multiple scoring methods, each adjustable by users, representing different features of the genes' positional variation across species. The resulting rankings can be combined to identify candidate genes that may be subject to position effects. Furthermore, the ranking can be tailored to a specific set of reference genes. We evaluate the method within the context of TPE-OLD, a mechanism where telomeres can exert a direct influence on gene expression across considerable genomic distances, and empower researchers to delve deeper into genes of interest, analyzing their position across species and estimating their susceptibility to position effects like TPE-OLD. We also provide simple enrichment analyses of user-provided gene lists in relation to top-ranking candidate genes.
    Language English
    Publishing date 2024-04-25
    Publishing country England
    Document type Journal Article
    ISSN 2631-9268
    ISSN (online) 2631-9268
    DOI 10.1093/nargab/lqae037
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Quantitative systems pharmacology of the eye: Tools and data for ocular QSP.

    Kuepfer, Lars / Fuellen, Georg / Stahnke, Thomas

    CPT: pharmacometrics & systems pharmacology

    2023  Volume 12, Issue 3, Page(s) 288–299

    Abstract: Good eyesight belongs to the most-valued attributes of health, and diseases of the eye are a significant healthcare burden. Case numbers are expected to further increase in the next decades due to an aging society. The development of drugs in ... ...

    Abstract Good eyesight belongs to the most-valued attributes of health, and diseases of the eye are a significant healthcare burden. Case numbers are expected to further increase in the next decades due to an aging society. The development of drugs in ophthalmology, however, is difficult due to limited accessibility of the eye, in terms of drug administration and in terms of sampling of tissues for drug pharmacokinetics (PKs) and pharmacodynamics (PDs). Ocular quantitative systems pharmacology models provide the opportunity to describe the distribution of drugs in the eye as well as the resulting drug-response in specific segments of the eye. In particular, ocular physiologically-based PK (PBPK) models are necessary to describe drug concentration levels in different regions of the eye. Further, ocular effect models using molecular data from specific cellular systems are needed to develop dose-response correlations. We here describe the current status of PK/PBPK as well as PD models for the eyes and discuss cellular systems, data repositories, as well as animal models in ophthalmology. The application of the various concepts is highlighted for the development of new treatments for postoperative fibrosis after glaucoma surgery.
    MeSH term(s) Animals ; Network Pharmacology ; Models, Biological ; Pharmaceutical Preparations ; Pharmacology/methods
    Chemical Substances Pharmaceutical Preparations
    Language English
    Publishing date 2023-01-27
    Publishing country United States
    Document type Journal Article ; Review ; Research Support, Non-U.S. Gov't
    ZDB-ID 2697010-7
    ISSN 2163-8306 ; 2163-8306
    ISSN (online) 2163-8306
    ISSN 2163-8306
    DOI 10.1002/psp4.12918
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: The Antibiotic Kitasamycin-A Potential Agent for Specific Fibrosis Preventing Therapy after Fistulating Glaucoma Surgery?

    Sterenczak, Katharina A / Fuellen, Georg / Jünemann, Anselm / Guthoff, Rudolf F / Stachs, Oliver / Stahnke, Thomas

    Pharmaceutics

    2023  Volume 15, Issue 2

    Abstract: One major complication after fistulating glaucoma surgeries are fibroblast-mediated scarring processes and their specific prevention is key in the development of novel pharmaceutical concepts. Within this study a possible antifibrotic potential of ... ...

    Abstract One major complication after fistulating glaucoma surgeries are fibroblast-mediated scarring processes and their specific prevention is key in the development of novel pharmaceutical concepts. Within this study a possible antifibrotic potential of kitasamycin (KM) in a transforming growth factor (TGF)-β1-mediated fibroblast model was evaluated
    Language English
    Publishing date 2023-01-18
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2527217-2
    ISSN 1999-4923
    ISSN 1999-4923
    DOI 10.3390/pharmaceutics15020329
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Conference proceedings: Tackling Single Cell Data by Informatics and Biostatistics

    Fuellen, Georg / Binder, Harald

    2021  , Page(s) Abstr. 101

    Event/congress 66. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS), 12. Jahreskongress der Technologie- und Methodenplattform für die vernetzte medizinische Forschung e.V. (TMF); sine loco [digital]; Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie; 2021
    Keywords Medizin, Gesundheit ; single-cell ; biomedicine ; aging ; stem cells
    Publishing date 2021-09-24
    Publisher German Medical Science GMS Publishing House; Düsseldorf
    Document type Conference proceedings
    DOI 10.3205/21gmds112
    Database German Medical Science

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  7. Book ; Online ; Thesis: Microarray transcriptomics analysis of Hutchinson-Gilford progeria genetic disease and the exploitation of dual RNA-seq technology to unveil host-pathogen interaction

    Sueto, Salem Oduro Beffi [Verfasser] / Füllen, Georg [Gutachter] / Walter, Micheal Gutachter] / [Repsilber, Dirk [Gutachter]

    2024  

    Author's details Salem Oduro Beffi Sueto ; Gutachter: Georg Füllen, Micheal Walter, Dirk Repsilber
    Keywords Medizin, Gesundheit ; Medicine, Health
    Subject code sg610
    Language English
    Publisher Universitätsbibliothek Rostock
    Publishing place Rostock
    Document type Book ; Online ; Thesis
    Database Digital theses on the web

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  8. Article ; Online: Systematic estimation of biological age of

    Hartmann, Christiane / Herling, Luise / Hartmann, Alexander / Köckritz, Verena / Fuellen, Georg / Walter, Michael / Hermann, Andreas

    Frontiers in aging

    2023  Volume 4, Page(s) 1129107

    Abstract: Aging is a process that affects almost all multicellular organisms and since our population ages with increasing prevalence of age-related diseases, it is important to study basic processes involved in aging. Many studies have been published so far using ...

    Abstract Aging is a process that affects almost all multicellular organisms and since our population ages with increasing prevalence of age-related diseases, it is important to study basic processes involved in aging. Many studies have been published so far using different and often single age markers to estimate the biological age of organisms or different cell culture systems. However, comparability of studies is often hampered by the lack of a uniform panel of age markers. Consequently, we here suggest an easy-to-use biomarker-based panel of classical age markers to estimate the biological age of cell culture systems that can be used in standard cell culture laboratories. This panel is shown to be sensitive in a variety of aging conditions. We used primary human skin fibroblasts of different donor ages and additionally induced either replicative senescence or artificial aging by progerin overexpression. Using this panel, highest biological age was found for artificial aging by progerin overexpression. Our data display that aging varies depending on cell line and aging model and even from individual to individual showing the need for comprehensive analyses.
    Language English
    Publishing date 2023-02-15
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 3076785-4
    ISSN 2673-6217 ; 2673-6217
    ISSN (online) 2673-6217
    ISSN 2673-6217
    DOI 10.3389/fragi.2023.1129107
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Computational identification of natural senotherapeutic compounds that mimic dasatinib based on gene expression data.

    Meiners, Franziska / Hinz, Burkhard / Boeckmann, Lars / Secci, Riccardo / Sueto, Salem / Kuepfer, Lars / Fuellen, Georg / Barrantes, Israel

    Scientific reports

    2024  Volume 14, Issue 1, Page(s) 6286

    Abstract: The major risk factor for chronic disease is chronological age, and age-related chronic diseases account for the majority of deaths worldwide. Targeting senescent cells that accumulate in disease-related tissues presents a strategy to reduce disease ... ...

    Abstract The major risk factor for chronic disease is chronological age, and age-related chronic diseases account for the majority of deaths worldwide. Targeting senescent cells that accumulate in disease-related tissues presents a strategy to reduce disease burden and to increase healthspan. The senolytic combination of the tyrosine-kinase inhibitor dasatinib and the flavonol quercetin is frequently used in clinical trials aiming to eliminate senescent cells. Here, our goal was to computationally identify natural senotherapeutic repurposing candidates that may substitute dasatinib based on their similarity in gene expression effects. The natural senolytic piperlongumine (a compound found in long pepper), and the natural senomorphics parthenolide, phloretin and curcumin (found in various edible plants) were identified as potential substitutes of dasatinib. The gene expression changes underlying the repositioning highlight apoptosis-related genes and pathways. The four compounds, and in particular the top-runner piperlongumine, may be combined with quercetin to obtain natural formulas emulating the dasatinib + quercetin formula.
    MeSH term(s) Dasatinib/pharmacology ; Dasatinib/therapeutic use ; Quercetin/pharmacology ; Quercetin/therapeutic use ; Senotherapeutics ; Cellular Senescence ; Gene Expression
    Chemical Substances Dasatinib (RBZ1571X5H) ; Quercetin (9IKM0I5T1E) ; Senotherapeutics
    Language English
    Publishing date 2024-03-15
    Publishing country England
    Document type Journal Article
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-024-55870-4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Intracellular fraction of zona pellucida protein 3 is required for the oocyte-to-embryo transition in mice.

    Israel, Steffen / Seyfarth, Julia / Nolte, Thomas / Drexler, Hannes C A / Fuellen, Georg / Boiani, Michele

    Molecular human reproduction

    2023  Volume 29, Issue 11

    Abstract: In oocyte biology, the zona pellucida has long been known to operate three extracellular functions downstream of the secretory pathway, namely, encasing the oocytes in ovarian follicles, mediating sperm-oocyte interaction, and preventing premature embryo ...

    Abstract In oocyte biology, the zona pellucida has long been known to operate three extracellular functions downstream of the secretory pathway, namely, encasing the oocytes in ovarian follicles, mediating sperm-oocyte interaction, and preventing premature embryo contact with oviductal epithelium. The present study uncovers a fourth function that is fundamentally distinct from the other three, being critical for embryonic cell survival in mice. Intriguingly, the three proteins of the mouse zona pellucida (ZP1, ZP2, ZP3) were found abundantly present also inside the embryo 4 days after fertilization, as shown by mass spectrometry, immunoblotting, and immunofluorescence. Contrary to current understanding of the roles of ZP proteins, ZP3 was associated more with the cytoskeleton than with secretory vesicles in the subcortical region of metaphase II oocytes and zygotes, and was excluded from regions of cell-cell contact in cleavage-stage embryos. Trim-away-mediated knockdown of ZP3 in fertilized oocytes hampered the first zygotic cleavage, while ZP3 overexpression supported blastocyst formation. Transcriptome analysis of ZP3-knockdown embryos pointed at defects of cytoplasmic translation in the context of embryonic genome activation. This conclusion was supported by reduced protein synthesis in the ZP3-knockdown and by the lack of cleavage arrest when Trim-away was postponed from the one-cell to the late two-cell stage. These data place constraints on the notion that zona proteins only operate in the extracellular space, revealing also a role during the oocyte-to-embryo transition. Ultimately, these data recruit ZP3 into the family of maternal factors that contribute to developmental competence of mouse oocytes.
    MeSH term(s) Female ; Mice ; Male ; Animals ; Zona Pellucida/metabolism ; Semen/metabolism ; Oocytes/metabolism ; Zona Pellucida Glycoproteins/genetics ; Zona Pellucida Glycoproteins/metabolism ; Ovarian Follicle/metabolism
    Chemical Substances Zona Pellucida Glycoproteins
    Language English
    Publishing date 2023-11-06
    Publishing country England
    Document type Journal Article
    ZDB-ID 1324348-2
    ISSN 1460-2407 ; 1360-9947
    ISSN (online) 1460-2407
    ISSN 1360-9947
    DOI 10.1093/molehr/gaad038
    Database MEDical Literature Analysis and Retrieval System OnLINE

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