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  1. Article ; Online: Postnatal Dynamic Ciliary ARL13B and ADCY3 Localization in the Mouse Brain.

    Brewer, Katlyn K / Brewer, Kathryn M / Terry, Tiffany T / Caspary, Tamara / Vaisse, Christian / Berbari, Nicolas F

    Cells

    2024  Volume 13, Issue 3

    Abstract: Primary cilia are hair-like structures found on nearly all mammalian cell types, including cells in the developing and adult brain. A diverse set of receptors and signaling proteins localize within cilia to regulate many physiological and developmental ... ...

    Abstract Primary cilia are hair-like structures found on nearly all mammalian cell types, including cells in the developing and adult brain. A diverse set of receptors and signaling proteins localize within cilia to regulate many physiological and developmental pathways, including the Hedgehog (Hh) pathway. Defects in cilia structure, protein localization, and function lead to genetic disorders called ciliopathies, which present with various clinical features that include several neurodevelopmental phenotypes and hyperphagia-associated obesity. Despite their dysfunction being implicated in several disease states, understanding their roles in central nervous system (CNS) development and signaling has proven challenging. We hypothesize that dynamic changes to ciliary protein composition contribute to this challenge and may reflect unrecognized diversity of CNS cilia. The proteins ARL13B and ADCY3 are established markers of cilia in the brain. ARL13B is a regulatory GTPase important for regulating cilia structure, protein trafficking, and Hh signaling, and ADCY3 is a ciliary adenylyl cyclase. Here, we examine the ciliary localization of ARL13B and ADCY3 in the perinatal and adult mouse brain. We define changes in the proportion of cilia enriched for ARL13B and ADCY3 depending on brain region and age. Furthermore, we identify distinct lengths of cilia within specific brain regions of male and female mice. ARL13B+ cilia become relatively rare with age in many brain regions, including the hypothalamic feeding centers, while ADCY3 becomes a prominent cilia marker in the mature adult brain. It is important to understand the endogenous localization patterns of these proteins throughout development and under different physiological conditions as these common cilia markers may be more dynamic than initially expected. Understanding regional- and developmental-associated cilia protein composition signatures and physiological condition cilia dynamic changes in the CNS may reveal the molecular mechanisms associated with the features commonly observed in ciliopathy models and ciliopathies, like obesity and diabetes.
    MeSH term(s) Animals ; Female ; Male ; Mice ; ADP-Ribosylation Factors/metabolism ; Brain/metabolism ; Ciliopathies ; Hedgehog Proteins/metabolism ; Mammals/metabolism ; Obesity
    Chemical Substances ADP-Ribosylation Factors (EC 3.6.5.2) ; Hedgehog Proteins ; adenylate cyclase 3 (EC 4.6.1.1) ; Arl13b protein, mouse
    Language English
    Publishing date 2024-01-30
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2661518-6
    ISSN 2073-4409 ; 2073-4409
    ISSN (online) 2073-4409
    ISSN 2073-4409
    DOI 10.3390/cells13030259
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Spinophilin-dependent regulation of GluN2B-containing NMDAR-dependent calcium influx, GluN2B surface expression, and cleaved caspase expression.

    Salek, Asma B / Claeboe, Emily T / Bansal, Ruchi / Berbari, Nicolas F / Baucum, Anthony J

    Synapse (New York, N.Y.)

    2023  Volume 77, Issue 3, Page(s) e22264

    Abstract: N-methyl-d-aspartate receptors (NMDARs) are calcium-permeable ion channels that are ubiquitously expressed within the glutamatergic postsynaptic density. Phosphorylation of NMDAR subunits defines receptor conductance and surface localization, two ... ...

    Abstract N-methyl-d-aspartate receptors (NMDARs) are calcium-permeable ion channels that are ubiquitously expressed within the glutamatergic postsynaptic density. Phosphorylation of NMDAR subunits defines receptor conductance and surface localization, two alterations that can modulate overall channel activity. Modulation of NMDAR phosphorylation by kinases and phosphatases regulates the amount of calcium entering the cell and subsequent activation of calcium-dependent processes. The dendritic spine enriched protein, spinophilin, is the major synaptic protein phosphatase 1 (PP1) targeting protein. Depending on the substrate, spinophilin can act as either a PP1 targeting protein, to permit substrate dephosphorylation, or a PP1 inhibitory protein, to enhance substrate phosphorylation. Spinophilin limits NMDAR function in a PP1-dependent manner. Specifically, we have previously shown that spinophilin sequesters PP1 away from the GluN2B subunit of the NMDAR, which results in increased phosphorylation of Ser-1284 on GluN2B. However, how spinophilin modifies NMDAR function is unclear. Herein, we utilize a Neuro2A cell line to detail that Ser-1284 phosphorylation increases calcium influx via GluN2B-containing NMDARs. Moreover, overexpression of spinophilin decreases GluN2B-containing NMDAR activity by decreasing its surface expression, an effect that is independent of Ser-1284 phosphorylation. In hippocampal neurons isolated from spinophilin knockout animals, there is an increase in cleaved caspase-3 levels, a marker of calcium-associated apoptosis, compared with wildtype mice. Taken together, our data demonstrate that spinophilin regulates GluN2B containing NMDAR phosphorylation, channel function, and trafficking and that loss of spinophilin enhances neuronal cleaved caspase-3 expression.
    MeSH term(s) Mice ; Animals ; Receptors, N-Methyl-D-Aspartate/genetics ; Receptors, N-Methyl-D-Aspartate/metabolism ; Calcium/metabolism ; Caspase 3/metabolism ; Caspases/metabolism
    Chemical Substances Receptors, N-Methyl-D-Aspartate ; neurabin ; Calcium (SY7Q814VUP) ; Caspase 3 (EC 3.4.22.-) ; Caspases (EC 3.4.22.-)
    Language English
    Publishing date 2023-02-18
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 639061-4
    ISSN 1098-2396 ; 0885-8276 ; 0887-4476
    ISSN (online) 1098-2396
    ISSN 0885-8276 ; 0887-4476
    DOI 10.1002/syn.22264
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Using a Student-Generated Mock Magazine Issue To Improve Students' Awareness of Diverse Scientists.

    Robison, Jennifer D / Berbari, Nicolas F / Rao, Anusha S

    Journal of microbiology & biology education

    2020  Volume 21, Issue 3

    Abstract: This study explores whether integrating multicultural content within a genetics laboratory course affected students' awareness of diversity and their perceptions of scientists' identities. Genetics laboratory curricula typically focus on content and ... ...

    Abstract This study explores whether integrating multicultural content within a genetics laboratory course affected students' awareness of diversity and their perceptions of scientists' identities. Genetics laboratory curricula typically focus on content and experimental procedures, with cursory references to the scientists who made these discoveries. The resulting poor racial and gender representation in the curricula propagate biases about the abilities and contributions of scientists from underrepresented groups, which may adversely affect the retention and success of students in these groups. Initially, students completed a pre-test in which they were asked to recall the names of geneticists and their scientific contributions. Later students created a mock magazine issue featuring a diverse set of experts in genetics, specifically members of traditionally underrepresented gender/sexuality and/or racial/ethnic groups. To facilitate this assignment, students were randomly assigned a geneticist from a pool of active research scientists, spanning a wide range of scientific and cultural backgrounds and identities. Each student wrote a 500-word biography of their assigned geneticist and read biographies composed by peers. Then, in groups, the students categorized biographies based on student-selected unifying themes into a table of contents. On the final exam, the pre-test was repeated as a post-test. In the pre-test, scientists listed by students were 94% male and 6% female, with no members of other underrepresented groups included. In the post-test, scientists listed by students shifted to 84% male and 16% female with 18% from underrepresented groups. These data suggest that this intervention increases awareness of the multicultural nature of scientists.
    Language English
    Publishing date 2020-12-21
    Publishing country United States
    Document type Journal Article
    ISSN 1935-7877
    ISSN 1935-7877
    DOI 10.1128/jmbe.v21i3.2233
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: The Hedgehog Signaling Pathway is Expressed in the Adult Mouse Hypothalamus and Modulated by Fasting.

    Antonellis, Patrick J / Engle, Staci E / Brewer, Kathryn M / Berbari, Nicolas F

    eNeuro

    2021  Volume 8, Issue 5

    Abstract: The hedgehog signaling pathway is best known for its role in developmental patterning of the neural tube and limb bud. More recently, hedgehog signaling has been recognized for its roles in growth of adult tissues and maintenance of progenitor cell ... ...

    Abstract The hedgehog signaling pathway is best known for its role in developmental patterning of the neural tube and limb bud. More recently, hedgehog signaling has been recognized for its roles in growth of adult tissues and maintenance of progenitor cell niches. However, the role of hedgehog signaling in fully differentiated cells like neurons in the adult brain is less clear. In mammals, coordination of hedgehog pathway activity relies on primary cilia and patients with ciliopathies such as Bardet-Biedl and Alström syndrome exhibit clinical features clearly attributable to errant hedgehog such as polydactyly. However, these ciliopathies also present with features not clearly associated with hedgehog signaling such as hyperphagia-associated obesity. How hedgehog signaling may contribute to feeding behavior is complex and unclear, but cilia are critical for proper energy homeostasis. Here, we provide a detailed analysis of the expression of core components of the hedgehog signaling pathway in the adult mouse hypothalamus with an emphasis on feeding centers. We show that hedgehog pathway genes continue to be expressed in differentiated neurons important for the regulation of feeding behavior. Furthermore, we demonstrate for the first time that pathway activity is regulated at the transcriptional level by fasting. These data suggest that hedgehog signaling is involved in the proper functioning of brain regions that regulate feeding behavior and that hedgehog pathway dysfunction may play a role in the obesity observed in certain ciliopathies.
    MeSH term(s) Animals ; Cilia/metabolism ; Fasting ; Hedgehog Proteins/genetics ; Hedgehog Proteins/metabolism ; Humans ; Hypothalamus/metabolism ; Mice ; Signal Transduction
    Chemical Substances Hedgehog Proteins
    Language English
    Publishing date 2021-09-29
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2800598-3
    ISSN 2373-2822 ; 2373-2822
    ISSN (online) 2373-2822
    ISSN 2373-2822
    DOI 10.1523/ENEURO.0276-21.2021
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Neuronal cilia in energy homeostasis

    Kathryn M. Brewer / Katlyn K. Brewer / Nicholas C. Richardson / Nicolas F. Berbari

    Frontiers in Cell and Developmental Biology, Vol

    2022  Volume 10

    Abstract: A subset of genetic disorders termed ciliopathies are associated with obesity. The mechanisms behind cilia dysfunction and altered energy homeostasis in these syndromes are complex and likely involve deficits in both development and adult homeostasis. ... ...

    Abstract A subset of genetic disorders termed ciliopathies are associated with obesity. The mechanisms behind cilia dysfunction and altered energy homeostasis in these syndromes are complex and likely involve deficits in both development and adult homeostasis. Interestingly, several cilia-associated gene mutations also lead to morbid obesity. While cilia have critical and diverse functions in energy homeostasis, including their roles in centrally mediated food intake and peripheral tissues, many questions remain. Here, we briefly discuss syndromic ciliopathies and monogenic cilia signaling mutations associated with obesity. We then focus on potential ways neuronal cilia regulate energy homeostasis. We discuss the literature around cilia and leptin-melanocortin signaling and changes in ciliary G protein-coupled receptor (GPCR) signaling. We also discuss the different brain regions where cilia are implicated in energy homeostasis and the potential for cilia dysfunction in neural development to contribute to obesity. We close with a short discussion on the challenges and opportunities associated with studies looking at neuronal cilia and energy homeostasis. This review highlights how neuronal cilia-mediated signaling is critical for proper energy homeostasis.
    Keywords Neuronal cilia ; obesity ; Leptin-melanocortin signaling ; GPCR signaling ; energy homeostasis ; Biology (General) ; QH301-705.5
    Language English
    Publishing date 2022-12-01T00:00:00Z
    Publisher Frontiers Media S.A.
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: Cilia signaling and obesity.

    Engle, Staci E / Bansal, Ruchi / Antonellis, Patrick J / Berbari, Nicolas F

    Seminars in cell & developmental biology

    2020  Volume 110, Page(s) 43–50

    Abstract: An emerging number of rare genetic disorders termed ciliopathies are associated with pediatric obesity. It is becoming clear that the mechanisms associated with cilia dysfunction and obesity in these syndromes are complex. In addition to ciliopathic ... ...

    Abstract An emerging number of rare genetic disorders termed ciliopathies are associated with pediatric obesity. It is becoming clear that the mechanisms associated with cilia dysfunction and obesity in these syndromes are complex. In addition to ciliopathic syndromic forms of obesity, several cilia-associated signaling gene mutations also lead to morbid obesity. While cilia have critical and diverse functions in energy homeostasis including their roles in centrally mediated food intake as well as in peripheral tissues, many questions remain. Here, we briefly discuss the syndromic ciliopathies and monoallelic cilia signaling gene mutations associated with obesity. We also describe potential ways cilia may be involved in common obesity. We discuss how neuronal cilia impact food intake potentially through leptin signaling and changes in ciliary G protein-coupled receptor (GPCR) signaling. We highlight several recent studies that have implicated the potential for cilia in peripheral tissues such as adipose and the pancreas to contribute to metabolic dysfunction. Then we discuss the potential for cilia to impact energy homeostasis through their roles in both development and adult tissue homeostasis. The studies discussed in this review highlight how a comprehensive understanding of the requirement of cilia for the regulation of diverse biological functions will contribute to our understanding of common forms of obesity.
    MeSH term(s) Adaptor Proteins, Signal Transducing/genetics ; Adaptor Proteins, Signal Transducing/metabolism ; Adipose Tissue/metabolism ; Adipose Tissue/pathology ; Adult ; Alpha-Ketoglutarate-Dependent Dioxygenase FTO/genetics ; Alpha-Ketoglutarate-Dependent Dioxygenase FTO/metabolism ; Animals ; Child ; Cilia/metabolism ; Cilia/pathology ; Ciliopathies/genetics ; Ciliopathies/metabolism ; Ciliopathies/pathology ; Eating/genetics ; Gene Expression Regulation ; Humans ; Hypothalamus/metabolism ; Hypothalamus/pathology ; Leptin/genetics ; Leptin/metabolism ; Neurons/metabolism ; Neurons/pathology ; Obesity, Morbid/genetics ; Obesity, Morbid/metabolism ; Obesity, Morbid/pathology ; Pancreas/metabolism ; Pancreas/pathology ; Pediatric Obesity/genetics ; Pediatric Obesity/metabolism ; Pediatric Obesity/pathology ; Signal Transduction
    Chemical Substances Adaptor Proteins, Signal Transducing ; LEP protein, human ; Leptin ; RPGRIP1L protein, human ; Alpha-Ketoglutarate-Dependent Dioxygenase FTO (EC 1.14.11.33) ; FTO protein, human (EC 1.14.11.33)
    Language English
    Publishing date 2020-05-25
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 1312473-0
    ISSN 1096-3634 ; 1084-9521
    ISSN (online) 1096-3634
    ISSN 1084-9521
    DOI 10.1016/j.semcdb.2020.05.006
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Physiological Condition-Dependent Changes in Ciliary GPCR Localization in the Brain.

    Brewer, Kathryn M / Engle, Staci E / Bansal, Ruchi / Brewer, Katlyn K / Jasso, Kalene R / McIntyre, Jeremy C / Vaisse, Christian / Reiter, Jeremy F / Berbari, Nicolas F

    eNeuro

    2023  Volume 10, Issue 3

    Abstract: Primary cilia are cellular appendages critical for diverse types of Signaling. They are found on most cell types, including cells throughout the CNS. Cilia preferentially localize certain G-protein-coupled receptors (GPCRs) and are critical for mediating ...

    Abstract Primary cilia are cellular appendages critical for diverse types of Signaling. They are found on most cell types, including cells throughout the CNS. Cilia preferentially localize certain G-protein-coupled receptors (GPCRs) and are critical for mediating the signaling of these receptors. Several of these neuronal GPCRs have recognized roles in feeding behavior and energy homeostasis. Cell and model systems, such as
    MeSH term(s) Mice ; Animals ; Receptors, G-Protein-Coupled/metabolism ; Signal Transduction ; Brain/metabolism ; Caenorhabditis elegans ; Mammals/metabolism
    Chemical Substances Receptors, G-Protein-Coupled
    Language English
    Publishing date 2023-03-13
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2800598-3
    ISSN 2373-2822 ; 2373-2822
    ISSN (online) 2373-2822
    ISSN 2373-2822
    DOI 10.1523/ENEURO.0360-22.2023
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Ciliary ARL13B prevents obesity in mice.

    Terry, Tiffany T / Gigante, Eduardo D / Alexandre, Coralie M / Brewer, Kathryn M / Engle, Staci E / Yue, Xinyu / Berbari, Nicolas F / Vaisse, Christian / Caspary, Tamara

    bioRxiv : the preprint server for biology

    2023  

    Abstract: Cilia are near ubiquitous small, cellular appendages critical for cell-to-cell communication. As such, they are involved in diverse developmental and homeostatic processes, including energy homeostasis. ARL13B is a regulatory GTPase highly enriched in ... ...

    Abstract Cilia are near ubiquitous small, cellular appendages critical for cell-to-cell communication. As such, they are involved in diverse developmental and homeostatic processes, including energy homeostasis. ARL13B is a regulatory GTPase highly enriched in cilia. Mice expressing an engineered ARL13B variant, ARL13B
    Language English
    Publishing date 2023-08-04
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.08.02.551695
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Distribution of prototypical primary cilia markers in subtypes of retinal ganglion cells.

    Kowal, Tia J / Dhande, Onkar S / Wang, Biao / Wang, Qing / Ning, Ke / Liu, Wendy / Berbari, Nicolas F / Hu, Yang / Sun, Yang

    The Journal of comparative neurology

    2022  Volume 530, Issue 12, Page(s) 2176–2187

    Abstract: Loss of retinal ganglion cells (RGCs) underlies several forms of retinal disease including glaucomatous optic neuropathy, a leading cause of irreversible blindness. Several rare genetic disorders associated with cilia dysfunction have retinal ... ...

    Abstract Loss of retinal ganglion cells (RGCs) underlies several forms of retinal disease including glaucomatous optic neuropathy, a leading cause of irreversible blindness. Several rare genetic disorders associated with cilia dysfunction have retinal degeneration as a clinical hallmark. Much of the focus of ciliopathy associated blindness is on the connecting cilium of photoreceptors; however, RGCs also possess primary cilia. It is unclear what roles RGC cilia play, what proteins and signaling machinery localize to RGC cilia, or how RGC cilia are differentiated across the subtypes of RGCs. To better understand these questions, we assessed the presence or absence of a prototypical cilia marker Arl13b and a widely distributed neuronal cilia marker AC3 in different subtypes of mouse RGCs. Interestingly, not all RGC subtype cilia are the same and there are significant differences even among these standard cilia markers. Alpha-RGCs positive for osteopontin, calretinin, and SMI32 primarily possess AC3-positive cilia. Directionally selective RGCs that are CART positive or Trhr positive localize either Arl13b or AC3, respectively, in cilia. Intrinsically photosensitive RGCs differentially localize Arl13b and AC3 based on melanopsin expression. Taken together, we characterized the localization of gold standard cilia markers in different subtypes of RGCs and conclude that cilia within RGC subtypes may be differentially organized. Future studies aimed at understanding RGC cilia function will require a fundamental ability to observe the cilia across subtypes as their signaling protein composition is elucidated. A comprehensive understanding of RGC cilia may reveal opportunities to understanding how their dysfunction leads to retinal degeneration.
    MeSH term(s) Animals ; Biomarkers/metabolism ; Blindness ; Cilia ; Glaucoma/metabolism ; Mice ; Retinal Degeneration/etiology ; Retinal Ganglion Cells/metabolism
    Chemical Substances Biomarkers
    Language English
    Publishing date 2022-04-17
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 3086-7
    ISSN 1096-9861 ; 0021-9967 ; 0092-7317
    ISSN (online) 1096-9861
    ISSN 0021-9967 ; 0092-7317
    DOI 10.1002/cne.25326
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Primary cilia in osteoblasts and osteocytes are required for skeletal development and mechanotransduction.

    Moraes de Lima Perini, Mariana / Pugh, Julie N / Scott, Elizabeth M / Bhula, Karan / Chirgwin, Austin / Reul, Olivia N / Berbari, Nicolas F / Li, Jiliang

    bioRxiv : the preprint server for biology

    2023  

    Abstract: Primary cilia have been involved in the development and mechanosensation of various tissue types, including bone. In this study, we explored the mechanosensory role of primary cilia in bone growth and adaptation by examining two cilia specific genes, ... ...

    Abstract Primary cilia have been involved in the development and mechanosensation of various tissue types, including bone. In this study, we explored the mechanosensory role of primary cilia in bone growth and adaptation by examining two cilia specific genes, IFT88 and MKS5, required for proper cilia assembly and function. To analyze the role of primary cilia in osteoblasts, Osx1-GFP:Cre mice were bred with IFT88
    Language English
    Publishing date 2023-12-18
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.12.15.570609
    Database MEDical Literature Analysis and Retrieval System OnLINE

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