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  1. Article ; Online: Catalytic and transport cycles of ABC exporters.

    Al-Shawi, Marwan K

    Essays in biochemistry

    2011  Volume 50, Issue 1, Page(s) 63–83

    Abstract: ABC (ATP-binding cassette) transporters are arguably the most important family of ATP-driven transporters in biology. Despite considerable effort and advances in determining the structures and physiology of these transporters, their fundamental molecular ...

    Abstract ABC (ATP-binding cassette) transporters are arguably the most important family of ATP-driven transporters in biology. Despite considerable effort and advances in determining the structures and physiology of these transporters, their fundamental molecular mechanisms remain elusive and highly controversial. How does ATP hydrolysis by ABC transporters drive their transport function? Part of the problem in answering this question appears to be a perceived need to formulate a universal mechanism. Although it has been generally hoped and assumed that the whole superfamily of ABC transporters would exhibit similar conserved mechanisms, this is proving not to be the case. Structural considerations alone suggest that there are three overall types of coupling mechanisms related to ABC exporters, small ABC importers and large ABC importers. Biochemical and biophysical characterization leads us to the conclusion that, even within these three classes, the catalytic and transport mechanisms are not fully conserved, but continue to evolve. ABC transporters also exhibit unusual characteristics not observed in other primary transporters, such as uncoupled basal ATPase activity, that severely complicate mechanistic studies by established methods. In this chapter, I review these issues as related to ABC exporters in particular. A consensus view has emerged that ABC exporters follow alternating-access switch transport mechanisms. However, some biochemical data suggest that alternating catalytic site transport mechanisms are more appropriate for fully symmetrical ABC exporters. Heterodimeric and asymmetrical ABC exporters appear to conform to simple alternating-access-type mechanisms.
    MeSH term(s) ATP-Binding Cassette Transporters/chemistry ; ATP-Binding Cassette Transporters/metabolism ; Adenosine Triphosphate/metabolism ; Catalysis ; Humans ; Models, Molecular ; Protein Conformation
    Chemical Substances Adenosine Triphosphate (8L70Q75FXE)
    Language English
    Publishing date 2011-09-07
    Publishing country England
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Review
    ISSN 1744-1358 ; 0071-1365
    ISSN (online) 1744-1358
    ISSN 0071-1365
    DOI 10.1042/bse0500063
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  2. Article: The remarkable transport mechanism of P-glycoprotein: a multidrug transporter.

    Al-Shawi, Marwan K / Omote, Hiroshi

    Journal of bioenergetics and biomembranes

    2006  Volume 37, Issue 6, Page(s) 489–496

    Abstract: Human P-glycoprotein (ABCB1) is a primary multidrug transporter located in plasma membranes, that utilizes the energy of ATP hydrolysis to pump toxic xenobiotics out of cells. P-glycoprotein employs a most unusual molecular mechanism to perform this drug ...

    Abstract Human P-glycoprotein (ABCB1) is a primary multidrug transporter located in plasma membranes, that utilizes the energy of ATP hydrolysis to pump toxic xenobiotics out of cells. P-glycoprotein employs a most unusual molecular mechanism to perform this drug transport function. Here we review our work to elucidate the molecular mechanism of drug transport by P-glycoprotein. High level heterologous expression of human P-glycoprotein, in the yeast Saccharomyces cerevisiae, has facilitated biophysical studies in purified proteoliposome preparations. Development of novel spin-labeled transport substrates has allowed for quantitative and rigorous measurements of drug transport in real time by EPR spectroscopy. We have developed a new drug transport model of P-glycoprotein from the results of mutagenic, quantitative thermodynamic and kinetic studies. This model satisfactorily accounts for most of the unusual kinetic, coupling, and physiological features of P-glycoprotein. Additionally, an atomic detail structural model of P-glycoprotein has been devised to place our results within a proper structural context.
    MeSH term(s) ATP Binding Cassette Transporter, Subfamily B, Member 1/chemistry ; ATP Binding Cassette Transporter, Subfamily B, Member 1/metabolism ; Biological Transport ; Electron Spin Resonance Spectroscopy ; Humans ; Kinetics ; Models, Chemical ; Thermodynamics
    Chemical Substances ATP Binding Cassette Transporter, Subfamily B, Member 1
    Language English
    Publishing date 2006-04-17
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Review
    ZDB-ID 198499-8
    ISSN 1573-6881 ; 0145-479X ; 0449-5705
    ISSN (online) 1573-6881
    ISSN 0145-479X ; 0449-5705
    DOI 10.1007/s10863-005-9497-5
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  3. Article: Interaction of transported drugs with the lipid bilayer and P-glycoprotein through a solvation exchange mechanism.

    Omote, Hiroshi / Al-Shawi, Marwan K

    Biophysical journal

    2006  Volume 90, Issue 11, Page(s) 4046–4059

    Abstract: Broad substrate specificity of human P-glycoprotein (ABCB1) is an essential feature of multidrug resistance. Transport substrates of P-glycoprotein are mostly hydrophobic and many of them have net positive charge. These compounds partition into the ... ...

    Abstract Broad substrate specificity of human P-glycoprotein (ABCB1) is an essential feature of multidrug resistance. Transport substrates of P-glycoprotein are mostly hydrophobic and many of them have net positive charge. These compounds partition into the membrane. Utilizing the energy of ATP hydrolysis, P-glycoprotein is thought to take up substrates from the cytoplasmic leaflet of the plasma membrane and to transport them to the outside of the cell. We examined this model by molecular dynamics simulation of the lipid bilayer, in the presence of transport substrates together with an atomic resolution structural model of P-glycoprotein. Taken together with previous electron paramagnetic resonance studies, the results suggest that most transported drugs are concentrated near the surface zone of the inner leaflet of the plasma membrane. Here the drugs can easily diffuse laterally into the drug-binding site of P-glycoprotein through an open cleft. It was concluded that the initial high-affinity drug-binding site was located in the interfacial surface area of P-glycoprotein in contact with the membrane interface. Based on these results and our recent kinetic studies, a "solvation exchange" drug transport mechanism of P-glycoprotein is discussed. A molecular basis for the improved colchicine transport efficiency by the much-studied colchicine-resistance G185V mutant human P-glycoprotein is also provided.
    MeSH term(s) 1,2-Dipalmitoylphosphatidylcholine/chemistry ; ATP-Binding Cassette Sub-Family B Member 2 ; ATP-Binding Cassette Transporters/chemistry ; ATP-Binding Cassette, Sub-Family B, Member 1/chemistry ; ATP-Binding Cassette, Sub-Family B, Member 1/metabolism ; Amino Acid Sequence ; Amino Acid Transport Systems, Basic/chemistry ; Bacterial Proteins/chemistry ; Binding Sites ; Biological Transport ; Computer Simulation ; Conserved Sequence ; Drug Resistance, Multiple ; Humans ; Hydrogen Bonding ; Lipid Bilayers/chemistry ; Lipid Bilayers/metabolism ; Models, Biological ; Models, Molecular ; Molecular Sequence Data ; Pharmaceutical Preparations/chemistry ; Pharmaceutical Preparations/metabolism ; Protein Conformation ; Sequence Homology, Amino Acid
    Chemical Substances ATP-Binding Cassette Sub-Family B Member 2 ; ATP-Binding Cassette, Sub-Family B, Member 1 ; Amino Acid Transport Systems, Basic ; Bacterial Proteins ; Lipid Bilayers ; MsbA protein, Bacteria ; Pharmaceutical Preparations ; TAP1 protein, human ; 1,2-Dipalmitoylphosphatidylcholine (2644-64-6) ; histidine permease, Bacteria (72060-35-6)
    Language English
    Publishing date 2006-06-01
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 218078-9
    ISSN 1542-0086 ; 0006-3495
    ISSN (online) 1542-0086
    ISSN 0006-3495
    DOI 10.1529/biophysj.105.077743
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  4. Article ; Online: The rotary mechanism of the ATP synthase.

    Nakamoto, Robert K / Baylis Scanlon, Joanne A / Al-Shawi, Marwan K

    Archives of biochemistry and biophysics

    2008  Volume 476, Issue 1, Page(s) 43–50

    Abstract: The F0F1 ATP synthase is a large complex of at least 22 subunits, more than half of which are in the membranous F0 sector. This nearly ubiquitous transporter is responsible for the majority of ATP synthesis in oxidative and photo-phosphorylation, and its ...

    Abstract The F0F1 ATP synthase is a large complex of at least 22 subunits, more than half of which are in the membranous F0 sector. This nearly ubiquitous transporter is responsible for the majority of ATP synthesis in oxidative and photo-phosphorylation, and its overall structure and mechanism have remained conserved throughout evolution. Most examples utilize the proton motive force to drive ATP synthesis except for a few bacteria, which use a sodium motive force. A remarkable feature of the complex is the rotary movement of an assembly of subunits that plays essential roles in both transport and catalytic mechanisms. This review addresses the role of rotation in catalysis of ATP synthesis/hydrolysis and the transport of protons or sodium.
    MeSH term(s) Adenosine Triphosphate/metabolism ; Animals ; Biological Transport ; Catalysis ; Humans ; Hydrolysis ; Models, Molecular ; Phosphorylation ; Protein Structure, Quaternary ; Proton-Motive Force/physiology ; Proton-Translocating ATPases/chemistry ; Proton-Translocating ATPases/physiology ; Protons
    Chemical Substances Protons ; Adenosine Triphosphate (8L70Q75FXE) ; Proton-Translocating ATPases (EC 3.6.3.14)
    Language English
    Publishing date 2008-05-20
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 523-x
    ISSN 1096-0384 ; 0003-9861
    ISSN (online) 1096-0384
    ISSN 0003-9861
    DOI 10.1016/j.abb.2008.05.004
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  5. Article: A rotor-stator cross-link in the F1-ATPase blocks the rate-limiting step of rotational catalysis.

    Scanlon, Joanne A Baylis / Al-Shawi, Marwan K / Nakamoto, Robert K

    The Journal of biological chemistry

    2008  Volume 283, Issue 38, Page(s) 26228–26240

    Abstract: ... Shawi, M. K., Le, N. P., and Nakamoto, R. K. (2007) Biochemistry 46, 8785-8797 ). Here we directly test ... able to release P(i). These data show that the rate-limiting rotation step, k(gamma), occurs after ... of the F(1)-ATPase enzyme that uniquely fits the pre-steady state and steady state data ( Baylis Scanlon, J. A., Al ...

    Abstract The F(0)F(1)-ATP synthase couples the functions of H(+) transport and ATP synthesis/hydrolysis through the efficient transmission of energy mediated by rotation of the centrally located gamma, epsilon, and c subunits. To understand the gamma subunit role in the catalytic mechanism, we previously determined the partial rate constants and devised a minimal kinetic model for the rotational hydrolytic mode of the F(1)-ATPase enzyme that uniquely fits the pre-steady state and steady state data ( Baylis Scanlon, J. A., Al-Shawi, M. K., Le, N. P., and Nakamoto, R. K. (2007) Biochemistry 46, 8785-8797 ). Here we directly test the model using two single cysteine mutants, betaD380C and betaE381C, which can be used to reversibly inhibit rotation upon formation of a cross-link with the conserved gammaCys-87. In the pre-steady state, the gamma-beta cross-linked enzyme at high Mg.ATP conditions retained the burst of hydrolysis but was not able to release P(i). These data show that the rate-limiting rotation step, k(gamma), occurs after hydrolysis and before P(i) release. This analysis provides additional insights into how the enzyme achieves efficient coupling and implicates the betaGlu-381 residue for proper formation of the rate-limiting transition state involving gamma subunit rotation.
    MeSH term(s) Adenosine Triphosphate/chemistry ; Catalysis ; Cross-Linking Reagents/pharmacology ; Cysteine/chemistry ; Electrochemistry/methods ; Escherichia coli/enzymology ; Histidine/chemistry ; Hydrolysis ; Kinetics ; Models, Biological ; Molecular Conformation ; Mutation ; NAD/chemistry ; Plasmids/metabolism ; Proton-Translocating ATPases/chemistry ; Proton-Translocating ATPases/genetics
    Chemical Substances Cross-Linking Reagents ; NAD (0U46U6E8UK) ; polyhistidine (26062-48-6) ; Histidine (4QD397987E) ; Adenosine Triphosphate (8L70Q75FXE) ; Proton-Translocating ATPases (EC 3.6.3.14) ; Cysteine (K848JZ4886)
    Language English
    Publishing date 2008-07-15
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2997-x
    ISSN 1083-351X ; 0021-9258
    ISSN (online) 1083-351X
    ISSN 0021-9258
    DOI 10.1074/jbc.M804858200
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  6. Article: Temperature dependence of single molecule rotation of the Escherichia coli ATP synthase F1 sector reveals the importance of gamma-beta subunit interactions in the catalytic dwell.

    Sekiya, Mizuki / Nakamoto, Robert K / Al-Shawi, Marwan K / Nakanishi-Matsui, Mayumi / Futai, Masamitsu

    The Journal of biological chemistry

    2009  Volume 284, Issue 33, Page(s) 22401–22410

    Abstract: The temperature-dependent rotation of F1-ATPase gamma subunit was observed in V(max) conditions at low viscous drag using a 60-nm gold bead (Nakanishi-Matsui, M., Kashiwagi, S., Hosokawa, H., Cipriano, D. J., Dunn, S. D., Wada, Y., and Futai, M. (2006) J. ...

    Abstract The temperature-dependent rotation of F1-ATPase gamma subunit was observed in V(max) conditions at low viscous drag using a 60-nm gold bead (Nakanishi-Matsui, M., Kashiwagi, S., Hosokawa, H., Cipriano, D. J., Dunn, S. D., Wada, Y., and Futai, M. (2006) J. Biol. Chem. 281, 4126-4131). The Arrhenius slopes of the speed of the individual 120 degrees steps and reciprocal of the pause length between rotation steps were very similar, indicating a flat energy pathway followed by the rotationally coupled catalytic cycle. In contrast, the Arrhenius slope of the reciprocal pause length of the gammaM23K mutant F1 was significantly increased, whereas that of the rotation rate was similar to wild type. The effects of the rotor gammaM23K substitution and the counteracting effects of betaE381D mutation in the interacting stator subunits demonstrate that the rotor-stator interactions play critical roles in the utilization of stored elastic energy. The gammaM23K enzyme must overcome an abrupt activation energy barrier, forcing it onto a less favored pathway that results in uncoupling catalysis from rotation.
    MeSH term(s) Adenosine Triphosphate/chemistry ; Catalysis ; Escherichia coli/enzymology ; Hydrolysis ; Kinetics ; Lysine/chemistry ; Models, Molecular ; Molecular Conformation ; Mutation ; Protein Conformation ; Proton-Translocating ATPases/chemistry ; Temperature ; Thermodynamics ; Time Factors
    Chemical Substances Adenosine Triphosphate (8L70Q75FXE) ; gamma subunit, F(1) ATPase (EC 3.6.3.-) ; Proton-Translocating ATPases (EC 3.6.3.14) ; Lysine (K3Z4F929H6)
    Language English
    Publishing date 2009-06-05
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2997-x
    ISSN 1083-351X ; 0021-9258
    ISSN (online) 1083-351X
    ISSN 0021-9258
    DOI 10.1074/jbc.M109.009019
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  7. Article: A novel electron paramagnetic resonance approach to determine the mechanism of drug transport by P-glycoprotein.

    Omote, Hiroshi / Al-Shawi, Marwan K

    The Journal of biological chemistry

    2002  Volume 277, Issue 47, Page(s) 45688–45694

    Abstract: ... an excellent transport substrate with apparent turnover number, K(m) and K(i) values of 5.8 s(-1), 4 microm ... transport substrate. The K(m) for MgATP activation of transport was 0.8 mm. By measuring the mobility ... in proteoliposome suspensions. Steady state gradients of spin-labeled verapamil within the range of K(i)/K(m) ratios ...

    Abstract ATP-driven pumping of a variety of drugs out of cells by the human P-glycoprotein poses a serious problem to medical therapy. High level heterologous expression of human P-glycoprotein, in the yeast Saccharomyces cerevisiae, has facilitated biophysical studies in purified proteoliposome preparations. Membrane permeability of transported drugs and consequent lack of an experimentally defined drug position have made resolution of the transport mechanism difficult by classical techniques. To overcome these obstacles we devised a novel EPR spin-labeled verapamil for use as a transport substrate. Spin-labeled verapamil was an excellent transport substrate with apparent turnover number, K(m) and K(i) values of 5.8 s(-1), 4 microm, and 210 microm, respectively, at pH 7.4 and 37 degrees C. The apparent affinities were approximately 10-fold higher than for unlabeled verapamil. Spin-labeled verapamil stimulated ATPase activity approximately 5-fold, was relatively hydrophilic, and had a very low flip-flop rate, making it an ideal transport substrate. The K(m) for MgATP activation of transport was 0.8 mm. By measuring the mobility of spin-labeled verapamil during transport experiments, we were able to resolve the location of the drug in proteoliposome suspensions. Steady state gradients of spin-labeled verapamil within the range of K(i)/K(m) ratios were observed.
    MeSH term(s) ATP Binding Cassette Transporter, Subfamily B, Member 1/metabolism ; Adenosine Triphosphatases/metabolism ; Biological Transport/physiology ; Calcium Channel Blockers/chemistry ; Calcium Channel Blockers/metabolism ; Cell Membrane/metabolism ; Drug Resistance/physiology ; Electron Spin Resonance Spectroscopy ; Humans ; Lipid Metabolism ; Lipids/chemistry ; Liposomes/chemistry ; Liposomes/metabolism ; Molecular Structure ; Particle Size ; Saccharomyces cerevisiae/cytology ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/metabolism ; Spin Labels/chemical synthesis ; Verapamil/chemistry ; Verapamil/metabolism
    Chemical Substances ATP Binding Cassette Transporter, Subfamily B, Member 1 ; Calcium Channel Blockers ; Lipids ; Liposomes ; Spin Labels ; Verapamil (CJ0O37KU29) ; Adenosine Triphosphatases (EC 3.6.1.-)
    Language English
    Publishing date 2002-09-19
    Publishing country United States
    Document type Journal Article ; Research Support, U.S. Gov't, P.H.S.
    ZDB-ID 2997-x
    ISSN 1083-351X ; 0021-9258
    ISSN (online) 1083-351X
    ISSN 0021-9258
    DOI 10.1074/jbc.M206479200
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  8. Article: Determination of the partial reactions of rotational catalysis in F1-ATPase.

    Scanlon, Joanne A Baylis / Al-Shawi, Marwan K / Le, Nga Phi / Nakamoto, Robert K

    Biochemistry

    2007  Volume 46, Issue 30, Page(s) 8785–8797

    Abstract: ... Yoshida, M., Kinosita, K., and Itoh, H. (2001) Nature 410, 898-904), we propose that the rate-limiting ... step involves a partial rotation of the gamma subunit; hence, we name this step k(gamma). Moreover ... to explain burst kinetics. Consistent with the single molecule analysis of Yasuda et al. (Yasuda, R., Noji, H ...

    Abstract Steady-state ATP hydrolysis in the F1-ATPase of the F(O)F1 ATP synthase complex involves rotation of the central gamma subunit relative to the catalytic sites in the alpha3beta3 pseudo-hexamer. To understand the relationship between the catalytic mechanism and gamma subunit rotation, the pre-steady-state kinetics of Mg x ATP hydrolysis in the soluble F1-ATPase upon rapid filling of all three catalytic sites was determined. The experimentally accessible partial reactions leading up to the rate-limiting step and continuing through to the steady-state mode were obtained for the first time. The burst kinetics and steady-state hydrolysis for a range of Mg x ATP concentrations provide adequate constraints for a unique minimal kinetic model that can fit all the data and satisfy extensive sensitivity tests. Significantly, the fits show that the ratio of the rates of ATP hydrolysis and synthesis is close to unity even in the steady-state mode of hydrolysis. Furthermore, the rate of Pi binding in the absence of the membranous F(O) sector is insignificant; thus, productive Pi binding does not occur without the influence of a proton motive force. In addition to the minimal steps of ATP binding, reversible ATP hydrolysis/synthesis, and the release of product Pi and ADP, one additional rate-limiting step is required to fit the burst kinetics. On the basis of the testing of all possible minimal kinetic models, this step must follow hydrolysis and precede Pi release in order to explain burst kinetics. Consistent with the single molecule analysis of Yasuda et al. (Yasuda, R., Noji, H., Yoshida, M., Kinosita, K., and Itoh, H. (2001) Nature 410, 898-904), we propose that the rate-limiting step involves a partial rotation of the gamma subunit; hence, we name this step k(gamma). Moreover, the only model that is consistent with our data and many other observations in the literature suggests that reversible hydrolysis/synthesis can only occur in the active site of the beta(TP) conformer (Abrahams, J. P., Leslie, A. G. W., Lutter, R., and Walker, J. E. (1994) Nature 370, 621-628).
    MeSH term(s) Adenosine Diphosphate/chemistry ; Adenosine Diphosphate/metabolism ; Adenosine Triphosphate/chemistry ; Adenosine Triphosphate/metabolism ; Binding Sites ; Catalysis ; Catalytic Domain ; Escherichia coli/enzymology ; Escherichia coli/genetics ; Hydrolysis ; Kinetics ; Models, Theoretical ; Mutagenesis, Site-Directed ; Phosphates/metabolism ; Proton-Motive Force ; Proton-Translocating ATPases/chemistry ; Proton-Translocating ATPases/genetics ; Proton-Translocating ATPases/metabolism ; Rotation ; Thermodynamics
    Chemical Substances Phosphates ; Adenosine Diphosphate (61D2G4IYVH) ; Adenosine Triphosphate (8L70Q75FXE) ; Proton-Translocating ATPases (EC 3.6.3.14)
    Language English
    Publishing date 2007-07-31
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 1108-3
    ISSN 1520-4995 ; 0006-2960
    ISSN (online) 1520-4995
    ISSN 0006-2960
    DOI 10.1021/bi700610m
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  9. Article ; Online: Single molecule behavior of inhibited and active states of Escherichia coli ATP synthase F1 rotation.

    Sekiya, Mizuki / Hosokawa, Hiroyuki / Nakanishi-Matsui, Mayumi / Al-Shawi, Marwan K / Nakamoto, Robert K / Futai, Masamitsu

    The Journal of biological chemistry

    2010  Volume 285, Issue 53, Page(s) 42058–42067

    Abstract: ... using a low viscous drag 60-nm bead attached to the γ subunit (Sekiya, M., Nakamoto, R. K., Al-Shawi, M ... K., Nakanishi-Matsui, M., and Futai, M. (2009) J. Biol. Chem. 284, 22401-22410). During the normal ...

    Abstract ATP hydrolysis-dependent rotation of the F(1) sector of the ATP synthase is a successive cycle of catalytic dwells (∼0.2 ms at 24 °C) and 120° rotation steps (∼0.6 ms) when observed under V(max) conditions using a low viscous drag 60-nm bead attached to the γ subunit (Sekiya, M., Nakamoto, R. K., Al-Shawi, M. K., Nakanishi-Matsui, M., and Futai, M. (2009) J. Biol. Chem. 284, 22401-22410). During the normal course of observation, the γ subunit pauses in a stochastic manner to a catalytically inhibited state that averages ∼1 s in duration. The rotation behavior with adenosine 5'-O-(3-thiotriphosphate) as the substrate or at a low ATP concentration (4 μM) indicates that the rotation is inhibited at the catalytic dwell when the bound ATP undergoes reversible hydrolysis/synthesis. The temperature dependence of rotation shows that F(1) requires ∼2-fold higher activation energy for the transition from the active to the inhibited state compared with that for normal steady-state rotation during the active state. Addition of superstoichiometric ε subunit, the inhibitor of F(1)-ATPase, decreases the rotation rate and at the same time increases the duration time of the inhibited state. Arrhenius analysis shows that the ε subunit has little effect on the transition between active and inhibited states. Rather, the ε subunit confers lower activation energy of steady-state rotation. These results suggest that the ε subunit plays a role in guiding the enzyme through the proper and efficient catalytic and transport rotational pathway but does not influence the transition to the inhibited state.
    MeSH term(s) Adenosine Triphosphate/chemistry ; Biochemistry/methods ; Biophysics/methods ; Catalysis ; Escherichia coli/enzymology ; Escherichia coli Proteins/chemistry ; Hydrolysis ; Kinetics ; Magnesium/chemistry ; Mitochondrial Proton-Translocating ATPases/metabolism ; Proton-Translocating ATPases/chemistry ; Temperature ; Viscosity
    Chemical Substances Escherichia coli Proteins ; Adenosine Triphosphate (8L70Q75FXE) ; F1F0-ATP synthase (EC 3.6.1.-) ; F0F1-ATPase epsilon subunit, E coli (EC 3.6.1.3) ; Mitochondrial Proton-Translocating ATPases (EC 3.6.3.-) ; gamma subunit, F(1) ATPase (EC 3.6.3.-) ; Proton-Translocating ATPases (EC 3.6.3.14) ; Magnesium (I38ZP9992A)
    Language English
    Publishing date 2010-10-25
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 2997-x
    ISSN 1083-351X ; 0021-9258
    ISSN (online) 1083-351X
    ISSN 0021-9258
    DOI 10.1074/jbc.M110.176701
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  10. Article: Temperature Dependence of Single Molecule Rotation of the Escherichia coli ATP Synthase F₁ Sector Reveals the Importance of γ-β Subunit Interactions in the Catalytic Dwell

    Sekiya, Mizuki / Nakamoto, Robert K / Al-Shawi, Marwan K / Nakanishi-Matsui, Mayumi / Futai, Masamitsu

    Journal of biological chemistry. 2009 Aug. 14, v. 284, no. 33

    2009  

    Abstract: The temperature-dependent rotation of F₁-ATPase γ subunit was observed in Vmax conditions at low viscous drag using a 60-nm gold bead (Nakanishi-Matsui, M., Kashiwagi, S., Hosokawa, H., Cipriano, D. J., Dunn, S. D., Wada, Y., and Futai, M. (2006) J. Biol. ...

    Abstract The temperature-dependent rotation of F₁-ATPase γ subunit was observed in Vmax conditions at low viscous drag using a 60-nm gold bead (Nakanishi-Matsui, M., Kashiwagi, S., Hosokawa, H., Cipriano, D. J., Dunn, S. D., Wada, Y., and Futai, M. (2006) J. Biol. Chem. 281, 4126-4131). The Arrhenius slopes of the speed of the individual 120° steps and reciprocal of the pause length between rotation steps were very similar, indicating a flat energy pathway followed by the rotationally coupled catalytic cycle. In contrast, the Arrhenius slope of the reciprocal pause length of the γM23K mutant F₁ was significantly increased, whereas that of the rotation rate was similar to wild type. The effects of the rotor γM23K substitution and the counteracting effects of βE381D mutation in the interacting stator subunits demonstrate that the rotor-stator interactions play critical roles in the utilization of stored elastic energy. The γM23K enzyme must overcome an abrupt activation energy barrier, forcing it onto a less favored pathway that results in uncoupling catalysis from rotation.
    Language English
    Dates of publication 2009-0814
    Size p. 22401-22410.
    Publishing place American Society for Biochemistry and Molecular Biology
    Document type Article
    ZDB-ID 2997-x
    ISSN 1083-351X ; 0021-9258
    ISSN (online) 1083-351X
    ISSN 0021-9258
    Database NAL-Catalogue (AGRICOLA)

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