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  1. Article: Microbial Populations of Stony Meteorites: Substrate Controls on First Colonizers.

    Tait, Alastair W / Gagen, Emma J / Wilson, Sasha A / Tomkins, Andrew G / Southam, Gordon

    Frontiers in microbiology

    2017  Volume 8, Page(s) 1227

    Abstract: Finding fresh, sterilized rocks provides ecologists with a clean slate to test ideas about first colonization and the evolution of ... ...

    Abstract Finding fresh, sterilized rocks provides ecologists with a clean slate to test ideas about first colonization and the evolution of soils
    Language English
    Publishing date 2017-06-30
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2587354-4
    ISSN 1664-302X
    ISSN 1664-302X
    DOI 10.3389/fmicb.2017.01227
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Nutrient recovery from water and wastewater

    Colston, Robert / Tait, Stephan / Vaneeckhaute, Céline / Cruz, Heidy / Pikaar, Ilje / Seviour, Thomas / Klok, Johannes B.M. / Weijma, Jan / Dijkman, Henk / Buisman, Cees J.N. / Scattergood, Sasha / Robles-Aguilar, Ana A. / Meers, Erik / Béline, Fabrice / Soares, Ana

    Resource Recovery from Water ; ISBN: 9781780409566

    2022  

    Keywords Life Science
    Language English
    Publisher IWA Publishing
    Publishing country nl
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article: Ammonia stress on a resilient mesophilic anaerobic inoculum: Methane production, microbial community, and putative metabolic pathways

    Buhlmann, Christopher H / Bede S. Mickan / Parisa A. Bahri / Sasha N. Jenkins / Stephan Tait / Tharanga K.A. Kahandawala

    Bioresource technology. 2019 Mar., v. 275

    2019  

    Abstract: Short term inhibition tests, 16S rRNA tag sequencing and Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt), were employed to visualise the effects of increasing total ammoniacal nitrogen (TAN) concentration (3400– ... ...

    Abstract Short term inhibition tests, 16S rRNA tag sequencing and Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt), were employed to visualise the effects of increasing total ammoniacal nitrogen (TAN) concentration (3400–10166 ppm TAN) on microbial community structure and metabolic pathways for acetate degradation. The rate of methane production on acetate was significantly reduced by TAN concentrations above 6133 ppm; however, methane continued to be produced, even at 10166 ppm TAN (0.026 ± 0.0003 gCOD.gVS−1inoculum.day−1). Hydrogenotrophic methanogenesis with syntrophic acetate oxidation (SAO) was identified as the dominant pathway for methane production. A shift towards SAO pathways at higher TAN concentrations and a decrease in the number of ‘gene hits’ for key genes in specific methanogenesis pathways was observed. Overall, the results highlighted potential for inhibition activity testing to be used together with PICRUSt, to estimate changes in microbial metabolism and to better understand microbial resilience in industrial AD facilities.
    Keywords acetates ; ammonia ; ammonium nitrogen ; biochemical pathways ; community structure ; genes ; inoculum ; metabolism ; methane ; methane production ; microbial communities ; oxidation ; phylogeny ; ribosomal DNA ; ribosomal RNA
    Language English
    Dates of publication 2019-03
    Size p. 70-77.
    Publishing place Elsevier Ltd
    Document type Article
    ZDB-ID 1065195-0
    ISSN 1873-2976 ; 0960-8524
    ISSN (online) 1873-2976
    ISSN 0960-8524
    DOI 10.1016/j.biortech.2018.12.012
    Database NAL-Catalogue (AGRICOLA)

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  4. Article ; Online: Ammonia stress on a resilient mesophilic anaerobic inoculum: Methane production, microbial community, and putative metabolic pathways.

    Buhlmann, Christopher H / Mickan, Bede S / Jenkins, Sasha N / Tait, Stephan / Kahandawala, Tharanga K A / Bahri, Parisa A

    Bioresource technology

    2018  Volume 275, Page(s) 70–77

    Abstract: Short term inhibition tests, 16S rRNA tag sequencing and Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt), were employed to visualise the effects of increasing total ammoniacal nitrogen (TAN) concentration (3400- ... ...

    Abstract Short term inhibition tests, 16S rRNA tag sequencing and Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt), were employed to visualise the effects of increasing total ammoniacal nitrogen (TAN) concentration (3400-10166 ppm TAN) on microbial community structure and metabolic pathways for acetate degradation. The rate of methane production on acetate was significantly reduced by TAN concentrations above 6133 ppm; however, methane continued to be produced, even at 10166 ppm TAN (0.026 ± 0.0003 gCOD.gVS
    MeSH term(s) Acetic Acid/metabolism ; Ammonia/metabolism ; Anaerobiosis ; Metabolic Networks and Pathways ; Methane/biosynthesis ; Microbiota ; Oxidation-Reduction ; Stress, Physiological
    Chemical Substances Ammonia (7664-41-7) ; Methane (OP0UW79H66) ; Acetic Acid (Q40Q9N063P)
    Language English
    Publishing date 2018-12-07
    Publishing country England
    Document type Journal Article
    ZDB-ID 1065195-0
    ISSN 1873-2976 ; 0960-8524
    ISSN (online) 1873-2976
    ISSN 0960-8524
    DOI 10.1016/j.biortech.2018.12.012
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Biochemical methane potential of dairy manure residues and separated fractions: An Australia-wide study of the impact of production and cleaning systems.

    Grell, Torben / Harris, Peter W / Marchuk, Serhiy / Jenkins, Sasha / McCabe, Bernadette K / Tait, Stephan

    Bioresource technology

    2023  Volume 391, Issue Pt A, Page(s) 129903

    Abstract: This study investigated biochemical methane potential ( ... ...

    Abstract This study investigated biochemical methane potential (B
    MeSH term(s) Manure ; Methane ; Anaerobiosis ; Australia ; Biofuels
    Chemical Substances Manure ; Methane (OP0UW79H66) ; Biofuels
    Language English
    Publishing date 2023-10-24
    Publishing country England
    Document type Journal Article
    ZDB-ID 1065195-0
    ISSN 1873-2976 ; 0960-8524
    ISSN (online) 1873-2976
    ISSN 0960-8524
    DOI 10.1016/j.biortech.2023.129903
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Designing a Child-, Family-, and Healthcare Provider-Centered Procedure Room in a Tertiary Care Children's Hospital.

    Litwin, Sasha / Clarke, Lindsay / Copeland, Jocelyne / Tyrrell, Jennifer / Tait, Caleb / Mohabir, Vina / Campbell, Fiona

    HERD

    2023  Volume 16, Issue 3, Page(s) 195–209

    Abstract: Aim: The study aim was to co-design new pediatric procedure room prototypes with children, caregivers, and healthcare providers (HCPs).: Background: Medical procedures can cause pain and anxiety for children and their families. If spaces are not ... ...

    Abstract Aim: The study aim was to co-design new pediatric procedure room prototypes with children, caregivers, and healthcare providers (HCPs).
    Background: Medical procedures can cause pain and anxiety for children and their families. If spaces are not designed for patients' needs, procedures may take longer, require sedation, and result in an inferior care experience. Involving HCPs in co-designing optimal spaces can result in more efficient and safer environments. co-designing spaces with patients and their families can inform psychologically safer and less traumatic environments.
    Methods: We followed human-centered design methodology. Data were collected via semi-structured interviews, field observations, and two multidisciplinary design workshops with patients, caregivers, and HCPs. Themes from the data were extracted using a content analysis and used to make evidence-informed recommendations for design features.
    Results: The study took place from October 2021 to February 2022. Patients, families, and HCPs reported similar needs: (1) control over the environment, including the ability to adjust lighting, temperature, and sound; (2) space that supports patient privacy; (3) the use of evidence-based pain reduction and distraction methods; (4) attention to the sensory environment, including visual (light, color), tactile (textures of furniture and equipment), auditory, and olfactory stimuli; (5) human factors organization of the space and equipment; (6) accessible and equitable spatial design; and (7) the significance of the journey leading up to and after the procedure.
    Conclusions: It is feasible to co-design procedure rooms that support evidence-based psychological, physical, and pharmacological interventions that are known to minimize pain for children.
    MeSH term(s) Humans ; Tertiary Healthcare ; Caregivers ; Anxiety ; Hospitals ; Pain ; Family
    Language English
    Publishing date 2023-04-05
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2525547-2
    ISSN 2167-5112 ; 1937-5867
    ISSN (online) 2167-5112
    ISSN 1937-5867
    DOI 10.1177/19375867231161097
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: The role of glucocorticoids and progestins in inflammatory, autoimmune, and infectious disease.

    Tait, A Sasha / Butts, Cherie L / Sternberg, Esther M

    Journal of leukocyte biology

    2008  Volume 84, Issue 4, Page(s) 924–931

    Abstract: A bidirectional communication exists between the CNS and the immune system. The autonomic nervous system, through neurotransmitters and neuropeptides, works in parallel with the hypothalamic-pituitary-adrenal axis through the actions of glucocorticoids ... ...

    Abstract A bidirectional communication exists between the CNS and the immune system. The autonomic nervous system, through neurotransmitters and neuropeptides, works in parallel with the hypothalamic-pituitary-adrenal axis through the actions of glucocorticoids to modulate inflammatory events. The immune system, through the action of cytokines and other factors, in turn, activates the CNS to orchestrate negative-feedback mechanisms that keep the immune response in check. Disruption of these interactions has been associated with a number of syndromes including inflammatory, autoimmune, and cardiovascular diseases, metabolic and psychiatric disorders, and the development of shock. The hypothalamic-pituitary-gonadal axis also plays an important part in regulating immunity through the secretion of sex hormones. Although numerous studies have established a role for immunomodulation by estrogen and testosterone, the role of progesterone is less well understood. Progesterone is crucial for reproductive organ development and maintenance of pregnancy, and more recent studies have clearly shown its role as an important immune regulator. The main focus of this review will be about the role of steroid hormones, specifically glucocorticoids and progesterone, in inflammatory responses and infectious diseases and how dysregulation of their actions may contribute to development of autoimmune and inflammatory disease.
    MeSH term(s) Autoimmune Diseases/physiopathology ; Disease Progression ; Disease Susceptibility ; Glucocorticoids/immunology ; Glucocorticoids/physiology ; Humans ; Infections/immunology ; Infections/physiopathology ; Inflammation/immunology ; Inflammation/physiopathology ; Lupus Erythematosus, Systemic/immunology ; Lupus Erythematosus, Systemic/physiopathology ; Polymorphism, Genetic ; Progestins/immunology ; Progestins/physiology ; Receptors, Glucocorticoid/genetics ; Receptors, Glucocorticoid/immunology ; Receptors, Glucocorticoid/physiology
    Chemical Substances Glucocorticoids ; Progestins ; Receptors, Glucocorticoid
    Language English
    Publishing date 2008-07-29
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 605722-6
    ISSN 1938-3673 ; 0741-5400
    ISSN (online) 1938-3673
    ISSN 0741-5400
    DOI 10.1189/jlb.0208104
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Cetuximab in Patients with Breast Cancer, Non-Small Cell Lung Cancer, and Ovarian Cancer Without KRAS, NRAS, or BRAF Mutations: Results from the Targeted Agent and Profiling Utilization Registry (TAPUR) Study.

    Fisher, Julie G / Tait, David / Garrett-Mayer, Elizabeth / Halabi, Susan / Mangat, Pam K / Schink, Julian C / Alvarez, Ricardo H / Veljovich, Dan / Cannon, Timothy L / Crilley, Pamela A / Pollock, Theodore / Calfa, Carmen J / Al Baghdadi, Tareq / Thota, Ramya / Fleming, Nicole / Cotta, Jared A / Rygiel, Andrew L / Warren, Sasha L / Schilsky, Richard L

    Targeted oncology

    2020  Volume 15, Issue 6, Page(s) 733–741

    Abstract: Background: The Targeted Agent and Profiling Utilization Registry (TAPUR) Study, a phase II basket study, evaluates anti-tumor activity of commercially available targeted agents in patients with advanced cancers harboring genomic alterations known as ... ...

    Abstract Background: The Targeted Agent and Profiling Utilization Registry (TAPUR) Study, a phase II basket study, evaluates anti-tumor activity of commercially available targeted agents in patients with advanced cancers harboring genomic alterations known as drug targets.
    Objective: With no known genomic targets predictive of sensitivity to cetuximab, cetuximab was evaluated in patients with breast cancer (BC), non-small cell lung cancer (NSCLC), and ovarian cancer (OC), without KRAS, NRAS, or BRAF mutations.
    Patients and methods: Eligible patients with advanced BC, NSCLC, and OC received a cetuximab loading dose, then weekly infusions (250 mg/m
    Results: Patients with BC (n = 10), NSCLC (n = 10), and OC (n = 29) were enrolled between June 2016 and September 2018. No objective responses or stable disease for at least 16 weeks were observed in the BC and NSCLC cohorts. No objective responses and four patients with stable disease for at least 16 weeks were observed in the OC cohort. Six of 49 patients reported grade 3 or higher adverse events or serious adverse events at least possibly related to cetuximab.
    Conclusions: Cetuximab does not have clinical activity in patients with advanced BC, NSCLC, and OC without KRAS, NRAS, or BRAF mutations.
    Clinical trial registration: NCT02693535 (26 February, 2016).
    MeSH term(s) Aged ; Antineoplastic Agents, Immunological/pharmacology ; Antineoplastic Agents, Immunological/therapeutic use ; Breast Neoplasms/drug therapy ; Carcinoma, Non-Small-Cell Lung/drug therapy ; Carcinoma, Ovarian Epithelial/drug therapy ; Cetuximab/pharmacology ; Cetuximab/therapeutic use ; Female ; Humans ; Lung Neoplasms/drug therapy ; Male ; Middle Aged ; Proto-Oncogene Proteins B-raf/genetics ; Registries
    Chemical Substances Antineoplastic Agents, Immunological ; Proto-Oncogene Proteins B-raf (EC 2.7.11.1) ; Cetuximab (PQX0D8J21J)
    Language English
    Publishing date 2020-10-22
    Publishing country France
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2222136-0
    ISSN 1776-260X ; 1776-2596
    ISSN (online) 1776-260X
    ISSN 1776-2596
    DOI 10.1007/s11523-020-00753-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: High-throughput clonal selection of recombinant CHO cells using a dominant selectable and amplifiable metallothionein-GFP fusion protein.

    Bailey, Charles G / Tait, A Sasha / Sunstrom, Noelle-Ann

    Biotechnology and bioengineering

    2002  Volume 80, Issue 6, Page(s) 670–676

    Abstract: Transfected mammalian cells can be used for the production of fully processed recombinant proteins for medical and industrial purposes. However, the isolation of high-producing clones is traditionally time-consuming. Therefore, we developed a high- ... ...

    Abstract Transfected mammalian cells can be used for the production of fully processed recombinant proteins for medical and industrial purposes. However, the isolation of high-producing clones is traditionally time-consuming. Therefore, we developed a high-throughput screening method to reduce the time and effort required to isolate high-producing cells. This involved the construction of an expression vector containing the amplifiable gene metallothionein (MT), fused in-frame to green fluorescent protein (GFP). The fusion gene (MTGFP) confers metal resistance similar to that of the wild-type metallothionein and expression can be monitored using either flow cytometry or a fluorometer to measure green fluorescence. Expression of MTGFP acted as a dominant selectable marker allowing rapid and more efficient selection of clones at defined metal concentrations than with the antibiotic G418. Cells harboring MTGFP responded to increasing metal concentrations with a corresponding increase in fluorescence. There was also a corresponding increase in recombinant protein production, indicating that MTGFP could be used as a selectable and amplifiable gene for the coexpression of foreign genes. Using our expression vector encoding MTGFP, we demonstrate a high-throughput clonal selection protocol for the rapid isolation of high-producing clones from transfected CHO cells. We were able to isolate cell lines reaching specific productivities of >10 microg hGH/10(6) cells/day within 4 weeks of transfection. The advantage of this method is that it can be easily adapted for automated procedures using robotic handling systems.
    MeSH term(s) Animals ; CHO Cells/physiology ; Cloning, Molecular/methods ; Cricetinae ; Gene Expression Regulation ; Genes, Dominant ; Green Fluorescent Proteins ; Luminescent Proteins ; Metallothionein/analysis ; Metallothionein/genetics ; Nucleic Acid Amplification Techniques/methods ; Quality Control ; Recombinant Fusion Proteins/biosynthesis ; Recombinant Fusion Proteins/metabolism ; Selection, Genetic ; Sensitivity and Specificity ; Species Specificity ; Statistics as Topic ; Transfection/methods
    Chemical Substances Luminescent Proteins ; Recombinant Fusion Proteins ; Green Fluorescent Proteins (147336-22-9) ; Metallothionein (9038-94-2)
    Language English
    Publishing date 2002-12-20
    Publishing country United States
    Document type Comparative Study ; Evaluation Studies ; Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 280318-5
    ISSN 1097-0290 ; 0006-3592
    ISSN (online) 1097-0290
    ISSN 0006-3592
    DOI 10.1002/bit.10424
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Reversible inactivation of HIF-1 prolyl hydroxylases allows cell metabolism to control basal HIF-1.

    Lu, Huasheng / Dalgard, Clifton L / Mohyeldin, Ahmed / McFate, Thomas / Tait, A Sasha / Verma, Ajay

    The Journal of biological chemistry

    2005  Volume 280, Issue 51, Page(s) 41928–41939

    Abstract: Continuous hydroxylation of the HIF-1 transcription factor alpha subunit by oxygen and 2-oxoglutarate-dependent dioxygenases promotes decay of this protein and thus prevents the transcriptional activation of many genes involved in energy metabolism, ... ...

    Abstract Continuous hydroxylation of the HIF-1 transcription factor alpha subunit by oxygen and 2-oxoglutarate-dependent dioxygenases promotes decay of this protein and thus prevents the transcriptional activation of many genes involved in energy metabolism, angiogenesis, cell survival, and matrix modification. Hypoxia blocks HIF-1alpha hydroxylation and thus activates HIF-1alpha-mediated gene expression. Several nonhypoxic stimuli can also activate HIF-1, although the mechanisms involved are not well known. Here we show that the glucose metabolites pyruvate and oxaloacetate inactivate HIF-1alpha decay in a manner selectively reversible by ascorbate, cysteine, histidine, and ferrous iron but not by 2-oxoglutarate or oxygen. Pyruvate and oxaloacetate bind to the 2-oxoglutarate site of HIF-1alpha prolyl hydroxylases, but their effects on HIF-1 are not mimicked by other Krebs cycle intermediates, including succinate and fumarate. We show that inactivation of HIF-1 hydroxylation by glucose-derived 2-oxoacids underlies the prominent basal HIF-1 activity commonly seen in many highly glycolytic cancer cells. Since HIF-1 itself promotes glycolytic metabolism, enhancement of HIF-1 by glucose metabolites may constitute a novel feed-forward signaling mechanism involved in malignant progression.
    MeSH term(s) Ascorbic Acid/pharmacology ; Base Sequence ; Cell Line ; Cysteine/pharmacology ; DNA Primers ; Glutathione/pharmacology ; Glycolysis ; Histidine/pharmacology ; Humans ; Hypoxia-Inducible Factor 1, alpha Subunit/antagonists & inhibitors ; Hypoxia-Inducible Factor 1, alpha Subunit/metabolism ; Oxaloacetic Acid/pharmacology ; Procollagen-Proline Dioxygenase/antagonists & inhibitors ; Procollagen-Proline Dioxygenase/metabolism ; Pyruvic Acid/pharmacology
    Chemical Substances DNA Primers ; HIF1A protein, human ; Hypoxia-Inducible Factor 1, alpha Subunit ; Oxaloacetic Acid (2F399MM81J) ; Histidine (4QD397987E) ; Pyruvic Acid (8558G7RUTR) ; Procollagen-Proline Dioxygenase (EC 1.14.11.2) ; Glutathione (GAN16C9B8O) ; Cysteine (K848JZ4886) ; Ascorbic Acid (PQ6CK8PD0R)
    Language English
    Publishing date 2005-10-13
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 2997-x
    ISSN 1083-351X ; 0021-9258
    ISSN (online) 1083-351X
    ISSN 0021-9258
    DOI 10.1074/jbc.M508718200
    Database MEDical Literature Analysis and Retrieval System OnLINE

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