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  1. Article: Insight into SARS-CoV-2 Omicron variant immune escape possibility and variant independent potential therapeutic opportunities.

    Alam, Mohammad Shah

    Heliyon

    2023  Volume 9, Issue 2, Page(s) e13285

    Abstract: The Omicron, the latest variant of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), was first detected in November 2021 in Botswana, South Africa. Compared to other variants of SARS-CoV-2, the Omicron is the most highly mutated, with 50 ... ...

    Abstract The Omicron, the latest variant of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), was first detected in November 2021 in Botswana, South Africa. Compared to other variants of SARS-CoV-2, the Omicron is the most highly mutated, with 50 mutations throughout the genome, most of which are in the spike (S) protein. These mutations may help the Omicron to evade host immunity against the vaccine. Epidemiological studies suggest that Omicron is highly infectious and spreads rapidly, but causes significantly less severe disease than the wild-type strain and the other variants of SARS-CoV-2. With the increased transmissibility and a higher rate of re-infection, Omicron has now become a dominant variant worldwide and is predicted to be able to evade vaccine-induced immunity. Several clinical studies using plasma samples from individuals receiving two doses of US Food and Drugs Administration (FDA)-approved COVID-19 vaccines have shown reduced humoral immune response against Omicron infection, but T cell-mediated immunity was well preserved. In fact, T cell-mediated immunity protects against severe disease, and thus the disease caused by Omicron remains mild. In this review, I surveyed the current status of Omicron variant mutations and mechanisms of immune response in the context of immune escape from COVID-19 vaccines. I also discuss the potential implications of therapeutic opportunities that are independent of SARS-CoV-2 variants, including Omicron. A better understanding of vaccine-induced immune responses and variant-independent therapeutic interventions that include potent antiviral, antioxidant, and anti-cytokine activities may pave the way to reducing Omicron-related COVID-19 complications, severity, and mortality. Collectively, these insights point to potential research gaps and will aid in the development of new-generation COVID-19 vaccines and antiviral drugs to combat Omicron, its sublineages, or upcoming new variants of SARS-CoV-2.
    Language English
    Publishing date 2023-01-31
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 2835763-2
    ISSN 2405-8440
    ISSN 2405-8440
    DOI 10.1016/j.heliyon.2023.e13285
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Insight into SARS-CoV-2 Omicron variant immune escape possibility and variant independent potential therapeutic opportunities

    Mohammad Shah Alam

    Heliyon, Vol 9, Iss 2, Pp e13285- (2023)

    2023  

    Abstract: The Omicron, the latest variant of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), was first detected in November 2021 in Botswana, South Africa. Compared to other variants of SARS-CoV-2, the Omicron is the most highly mutated, with 50 ... ...

    Abstract The Omicron, the latest variant of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), was first detected in November 2021 in Botswana, South Africa. Compared to other variants of SARS-CoV-2, the Omicron is the most highly mutated, with 50 mutations throughout the genome, most of which are in the spike (S) protein. These mutations may help the Omicron to evade host immunity against the vaccine. Epidemiological studies suggest that Omicron is highly infectious and spreads rapidly, but causes significantly less severe disease than the wild‐type strain and the other variants of SARS-CoV-2. With the increased transmissibility and a higher rate of re-infection, Omicron has now become a dominant variant worldwide and is predicted to be able to evade vaccine-induced immunity. Several clinical studies using plasma samples from individuals receiving two doses of US Food and Drugs Administration (FDA)-approved COVID-19 vaccines have shown reduced humoral immune response against Omicron infection, but T cell-mediated immunity was well preserved. In fact, T cell-mediated immunity protects against severe disease, and thus the disease caused by Omicron remains mild. In this review, I surveyed the current status of Omicron variant mutations and mechanisms of immune response in the context of immune escape from COVID-19 vaccines. I also discuss the potential implications of therapeutic opportunities that are independent of SARS-CoV-2 variants, including Omicron. A better understanding of vaccine-induced immune responses and variant-independent therapeutic interventions that include potent antiviral, antioxidant, and anti-cytokine activities may pave the way to reducing Omicron-related COVID-19 complications, severity, and mortality. Collectively, these insights point to potential research gaps and will aid in the development of new-generation COVID-19 vaccines and antiviral drugs to combat Omicron, its sublineages, or upcoming new variants of SARS-CoV-2.
    Keywords Omicron ; Immune escape ; Variants ; Humoral immunity ; T cell immunity ; Science (General) ; Q1-390 ; Social sciences (General) ; H1-99
    Subject code 572
    Language English
    Publishing date 2023-02-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: Retraction Note: Marangoni convection in dissipative flow of nanofluid through porous space.

    Ullah, Ikram / Alam, Mohammad Mahtab / Shah, Muhammad Irfan / Weera, Wajaree

    Scientific reports

    2023  Volume 13, Issue 1, Page(s) 22036

    Language English
    Publishing date 2023-12-12
    Publishing country England
    Document type Retraction of Publication
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-023-49474-7
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Effects of L-Carnitine Supplementation on the Rate of Weight Gain and Biomarkers of Environmental Enteric Dysfunction in Children with Severe Acute Malnutrition: A Double-Blind Randomized Controlled Clinical Trial.

    Alam, Jinat / Fahim, Shah Mohammad / Islam, Md Ridwan / Alam, Md Ashraful / Gazi, Md Amran / Ahmed, Tahmeed

    The Journal of nutrition

    2024  Volume 154, Issue 3, Page(s) 949–961

    Abstract: Background: Severe acute malnutrition (SAM) is a major public health concern among low- and middle-income countries, where the majority of the children encountering this acute form of malnutrition suffer from environmental enteric dysfunction (EED). ... ...

    Abstract Background: Severe acute malnutrition (SAM) is a major public health concern among low- and middle-income countries, where the majority of the children encountering this acute form of malnutrition suffer from environmental enteric dysfunction (EED). However, evidence regarding the effects of L-carnitine supplementation on the rate of weight gain and EED biomarkers in malnourished children is limited.
    Objectives: We aimed to investigate the role of L-carnitine supplementation on the rate of weight gain, duration of hospital stays, and EED biomarkers among children with SAM.
    Methods: A prospective, double-blind, placebo-controlled, randomized clinical trial was conducted at the Nutritional Rehabilitation Unit (NRU) of Dhaka Hospital, International Centre for Diarrheal Disease Research, Bangladesh. Children with SAM aged 9-24 mo were randomly assigned to receive commercial L-carnitine syrup (100 mg/kg/d) or placebo for 15 d in addition to standard of care. A total of 98 children with Weight-for-Length-z-score (WLZ) < -3 Standard deviation were enrolled between October 2021 and March 2023. Analyses were conducted on an intention-to-treat basis.
    Results: The primary outcome variable, "rate of weight gain," was comparable between L-carnitine and placebo groups (2.09 ± 2.23 compared with 2.07 ± 2.70; P = 0.973), which was consistent even after adjusting for potential covariates (age, sex, Weight-for-Age z-score, asset index, and WASH practices) through linear regression [ß: 0.37; 95% confidence interval (CI): -0.63,1.37; P = 0.465]. The average hospital stay was ∼4 d. The results of adjusted median regression showed that following intervention, there was no significant difference in the EED biomarkers among the treatment arms; Myeloperoxidase (ng/mL) [ß: -1342.29; 95% CI: -2817.35, 132.77; P = 0.074], Neopterin (nmol/L) [ß: -153.33; 95% CI: -556.58, 249.91; P = 0.452], alpha-1-antitrypsin (mg/mL) [ß: 0.05; 95% CI: -0.15, 0.25; P = 0.627]. Initial L-carnitine (μmol/L) levels (median, interquartile range) for L-carnitine compared with placebo were 54.84 (36.0, 112.9) and 59.74 (45.7, 96.0), whereas levels after intervention were 102.05 (60.9, 182.1) and 105.02 (73.1, 203.7).
    Conclusions: Although our study findings suggest that L-carnitine bears no additional effect on SAM, we recommend clinical trials with a longer duration of supplementation, possibly with other combinations of interventions, to investigate further into this topic of interest. This trial was registered at clinicaltrials.gov as NCT05083637.
    MeSH term(s) Child ; Humans ; Infant ; Bangladesh ; Biomarkers ; Carnitine/therapeutic use ; Dietary Supplements ; Malnutrition ; Prospective Studies ; Severe Acute Malnutrition/drug therapy ; Weight Gain ; Double-Blind Method
    Chemical Substances Biomarkers ; Carnitine (S7UI8SM58A)
    Language English
    Publishing date 2024-02-06
    Publishing country United States
    Document type Randomized Controlled Trial ; Journal Article
    ZDB-ID 218373-0
    ISSN 1541-6100 ; 0022-3166
    ISSN (online) 1541-6100
    ISSN 0022-3166
    DOI 10.1016/j.tjnut.2024.01.031
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: The Pros and Cons of Using ChatGPT in Medical Education: A Scoping Review.

    Mohammad, Bushra / Supti, Turjana / Alzubaidi, Mahmood / Shah, Hurmat / Alam, Tanvir / Shah, Zubair / Househ, Mowafa

    Studies in health technology and informatics

    2023  Volume 305, Page(s) 644–647

    Abstract: This scoping review explores the advantages and disadvantages of using ChatGPT in medical education. We searched PubMed, Google Scholar, Medline, Scopus, and Science Direct to identify relevant studies. Two reviewers independently conducted study ... ...

    Abstract This scoping review explores the advantages and disadvantages of using ChatGPT in medical education. We searched PubMed, Google Scholar, Medline, Scopus, and Science Direct to identify relevant studies. Two reviewers independently conducted study selection and data extraction, followed by a narrative synthesis. Out of 197 references, 25 studies met the eligibility criteria. The primary applications of ChatGPT in medical education include automated scoring, teaching assistance, personalized learning, research assistance, quick access to information, generating case scenarios and exam questions, content creation for learning facilitation, and language translation. We also discuss the challenges and limitations of using ChatGPT in medical education, such as its inability to reason beyond existing knowledge, generation of incorrect information, bias, potential undermining of students' critical thinking skills, and ethical concerns. These concerns include using ChatGPT for exam and assignment cheating by students and researchers, as well as issues related to patients' privacy.
    MeSH term(s) Humans ; Education, Medical ; Eligibility Determination ; Knowledge ; Learning ; MEDLINE
    Language English
    Publishing date 2023-06-19
    Publishing country Netherlands
    Document type Review ; Journal Article
    ISSN 1879-8365
    ISSN (online) 1879-8365
    DOI 10.3233/SHTI230580
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: N-acetylcysteine reduces severity and mortality in COVID-19 patients: A systematic review and meta-analysis.

    Alam, Mohammad Shah / Hasan, Mohammad Nazmol / Maowa, Zannatul / Khatun, Fahima / Nazir, K H M Nazmul Hussain / Alam, Mohammad Zahangeer

    Journal of advanced veterinary and animal research

    2023  Volume 10, Issue 2, Page(s) 157–168

    Abstract: Objectives: Recent clinical studies suggest that oxidative stress is one of the key players in the pathogenesis of coronavirus disease 2019 (COVID-19), and N-acetylcysteine (NAC), a potent antioxidant, has been shown to improve clinical outcomes in ... ...

    Abstract Objectives: Recent clinical studies suggest that oxidative stress is one of the key players in the pathogenesis of coronavirus disease 2019 (COVID-19), and N-acetylcysteine (NAC), a potent antioxidant, has been shown to improve clinical outcomes in COVID-19 patients. We conducted a systematic review and meta-analysis of the literature published on the therapeutic intervention of NAC on COVID-19 infection.
    Methods: We searched PubMed, Google Scholar, and Science Direct. We identified and screened eight studies with 20,503 participants, including 2,852 in the NAC-treated group and 17,651 in the placebo group, which reported the effect of NAC on COVID-19 infection. A meta-analysis was performed using forest plots under fixed effect estimates based on the standardized mean difference (SMD) and risk ratio (RR).
    Results: Pooled analysis showed that NAC was associated with lower mortality in patients with COVID-19 compared with the placebo group [RR, 0.65; (95% CI: 0.56 to 0.75);
    Conclusion: Although the number of included studies was minimal, this meta-analysis suggests that NAC may have a positive effect on COVID-19 outcomes, specifically, a significant decrease in CRP and D-dimer levels and a significant increase in oxygen saturation, which decreased mortality. We have also presented a comprehensive review of the role and mechanisms of NAC in patients with COVID-19.
    Language English
    Publishing date 2023-06-30
    Publishing country Bangladesh
    Document type Journal Article
    ZDB-ID 2766493-4
    ISSN 2311-7710 ; 2311-7710
    ISSN (online) 2311-7710
    ISSN 2311-7710
    DOI 10.5455/javar.2023.j665
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Marangoni convection in dissipative flow of nanofluid through porous space.

    Ullah, Ikram / Alam, Mohammad Mahtab / Shah, Muhammad Irfan / Weera, Wajaree

    publication RETRACTED

    Scientific reports

    2023  Volume 13, Issue 1, Page(s) 6287

    Abstract: In various machinery engines, the engine oil is utilized as a lubricant. Heat transportation rate and to saving the energy dissipated due to higher temperature are the basic goals of all thermal systems. Thus, current work is mainly focused to develop a ... ...

    Abstract In various machinery engines, the engine oil is utilized as a lubricant. Heat transportation rate and to saving the energy dissipated due to higher temperature are the basic goals of all thermal systems. Thus, current work is mainly focused to develop a model for the Marangoni flow of nanofluids (NFs) with viscous dissipation. The considered NFs are made of nanoparticles (NPs) i.e. [Formula: see text] and base fluid (BF) as Engine Oil (EO). Darcy Forchheimer (DF) law which leads to porous medium is implemented in the model to investigate the variations of NF velocity and temperature. The governing flow expressions are simplified through similarity variables. The obtained expressions are solved numerically via an effective technique known as the NDSolve algorithm. The consequences of pertinent variables on temperature, velocity and Nusselt number are designed through tables and graphs. The obtained results reveal that velocity rises for higher Marangoni number, Darcy Forchheimer (DF) parameter whereas it shows decaying behavior against nanoparticles volume fraction.
    Language English
    Publishing date 2023-04-18
    Publishing country England
    Document type Journal Article ; Retracted Publication
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-023-30795-6
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Transition of an acronym from nonalcoholic fatty liver disease to metabolic dysfunction-associated fatty liver disease.

    Alam, Shahinul / Fahim, Shah Mohammad

    World journal of hepatology

    2021  Volume 13, Issue 10, Page(s) 1203–1207

    Abstract: Nonalcoholic fatty liver disease (NAFLD) is a global public health concern owing to its substantial contribution to chronic liver diseases. The disease is closely linked to metabolic syndrome (MS), suggesting a common biological pathway and shared ... ...

    Abstract Nonalcoholic fatty liver disease (NAFLD) is a global public health concern owing to its substantial contribution to chronic liver diseases. The disease is closely linked to metabolic syndrome (MS), suggesting a common biological pathway and shared disease mechanism for both ailments. Previous studies revealed a close relationship of NAFLD with the components of MS including abdominal obesity, dyslipidemia, hypertension, and hyperglycemia. Hence, a group of experts recently renamed NAFLD as metabolic dysfunction-associated fatty liver disease (MAFLD) in order to encompass a more appropriate pathogenesis of the disease. NAFLD was first named to describe a condition similar to alcoholic hepatitis in absence of significant alcohol consumption. However, knowledge pertaining to the etiopathogenesis of the disease has evolved over the past four decades. Recent evidence endorses NAFLD as a terminology of exclusion and suggests that it may often leads to misdiagnosis or inappropriate management of patients, particularly in clinical practice. On the other hand, the new definition is useful in addressing hepatic steatosis with metabolic dysfunction, which ultimately covers most of the patients with such illness. Therefore, it seems to be helpful in improving clinical diagnosis and managing high-risk patients with fatty liver disease. However, it is imperative to validate the new terminology at the population level to ensure a holistic approach to reduce the global burden of this heterogeneous disease condition.
    Language English
    Publishing date 2021-10-15
    Publishing country United States
    Document type Editorial
    ZDB-ID 2573703-X
    ISSN 1948-5182
    ISSN 1948-5182
    DOI 10.4254/wjh.v13.i10.1203
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Retraction Note

    Ikram Ullah / Mohammad Mahtab Alam / Muhammad Irfan Shah / Wajaree Weera

    Scientific Reports, Vol 13, Iss 1, Pp 1-

    Marangoni convection in dissipative flow of nanofluid through porous space

    2023  Volume 1

    Keywords Medicine ; R ; Science ; Q
    Language English
    Publishing date 2023-12-01T00:00:00Z
    Publisher Nature Portfolio
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article ; Online: Energy transfer in Carreau Yasuda liquid influenced by engine oil with Magnetic dipole using tri-hybrid nanoparticles.

    Bilal, Muhammad / Ullah, Ikram / Alam, Mohammad Mahtab / Shah, Syed Irfan / Eldin, Sayed M

    Scientific reports

    2023  Volume 13, Issue 1, Page(s) 5432

    Abstract: The aim of the current analysis is to evaluate the significances of magnetic dipole and heat transmission through ternary hybrid Carreau Yasuda nanoliquid flow across a vertical stretching sheet. The ternary compositions of ... ...

    Abstract The aim of the current analysis is to evaluate the significances of magnetic dipole and heat transmission through ternary hybrid Carreau Yasuda nanoliquid flow across a vertical stretching sheet. The ternary compositions of Al
    Language English
    Publishing date 2023-04-03
    Publishing country England
    Document type Journal Article
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-023-32052-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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