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  1. Book ; Online: VINI in silico model of cancer

    Tomić, Draško

    2020  

    Abstract: The VINI in silico model of cancer approaches cancer in the spirit of system biology, and is oriented towards analysis of metabolic pathways. It was tested with the data from KEGG database, which, along with Reactome is considered the most reliable ... ...

    Abstract The VINI in silico model of cancer approaches cancer in the spirit of system biology, and is oriented towards analysis of metabolic pathways. It was tested with the data from KEGG database, which, along with Reactome is considered the most reliable source of experimentally confirmed metabolic reactions. The VINI model expresses near 92% in vitro and 80% in vivo accuracy in predicting the efficacy of cancer drugs. Because of the current situation with COVID-19 disease, its functionality was extended, and VINI is now able to predict the efficacy of drugs and chemical compounds in inhibiting the SARS-CoV-2 Spike glycoprotein.
    Keywords Human Genetics ; Genomics and Proteomics ; Molecular Biotechnology ; covid19
    Language English
    Publishing date 2020-04-02
    Publishing country hr
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: PULMONARY HEMORRHAGE AND CRESCENTIC GLOMERULONEPHRITIS IN A PATIENT WITH SEROPOSITIVE ANTI-GLOMERULAR BASEMENT MEMBRANE DISEASE AND ANTI-NEUTROPHIL CYTOPLASMIC ANTIBODIES.

    Sreter, Katherina Bernadette / Pavlović, Draško / Tomić, Monika / Šenjug, Petar / Galešić Ljubanović, Danica

    Acta clinica Croatica

    2023  Volume 61, Issue 3, Page(s) 528–533

    Abstract: Anti-glomerular basement membrane (anti-GBM) disease is an acute and life-threatening systemic autoimmune disorder. The coexistence of circulating anti-neutrophil cytoplasmic antibodies (ANCA) and anti-GBM disease, the so-called double-positive disease ( ... ...

    Abstract Anti-glomerular basement membrane (anti-GBM) disease is an acute and life-threatening systemic autoimmune disorder. The coexistence of circulating anti-neutrophil cytoplasmic antibodies (ANCA) and anti-GBM disease, the so-called double-positive disease (DPD), is exceptionally rare. We report a unique case of DPD manifesting as pulmonary-renal syndrome (PRS) in a 46-year-old woman who first presented with clinical and radiological suspicion of pneumonia. Chest computed tomography scan later revealed bilateral alveolar hemorrhage. Kidney biopsy showed necrotizing crescentic (100% glomeruli) glomerulonephritis. On immunofluorescence microscopy, glomeruli were global linear positive for IgG, confirming anti-GBM disease. Double positivity was detected for circulating anti-myeloperoxidase ANCA (p-ANCA) and anti-GBM antibodies. Acute renal failure evolved rapidly. Therapeutic plasma exchange (TPE) and hemodialysis (HD) were initiated early in combination with intravenous pulse corticosteroid therapy followed by oral methylprednisolone and cyclophosphamide. Pulmonary hemorrhage resolved, but renal function could not be preserved. The patient remains HD dependent. This case report highlights that pulmonary symptomatology may be the leading clinical presentation of PRS, with initially normal renal function at DPD onset. Early recognition and diagnosis are therefore crucial to timely clinical intervention. The role of prompt kidney biopsy and initiation of TPE and HD in PRS must not be underestimated.
    Language English
    Publishing date 2023-08-10
    Publishing country Croatia
    Document type Case Reports
    ZDB-ID 1478635-7
    ISSN 1333-9451 ; 0353-9466
    ISSN (online) 1333-9451
    ISSN 0353-9466
    DOI 10.20471/acc.2022.61.03.19
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Spontaneous remission of hyperparathyroidism.

    Pavlovic, Drasko / Brzac, Hrvojka Tomic

    Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association

    2008  Volume 23, Issue 12, Page(s) 4073–4; author reply 4074–5

    MeSH term(s) Humans ; Hyperparathyroidism/blood ; Hyperparathyroidism/diagnostic imaging ; Hyperparathyroidism/pathology ; Infarction/pathology ; Inflammation/pathology ; Parathyroid Hormone/blood ; Remission, Spontaneous ; Ultrasonography
    Chemical Substances Parathyroid Hormone
    Language English
    Publishing date 2008-12
    Publishing country England
    Document type Letter ; Comment
    ZDB-ID 90594-x
    ISSN 1460-2385 ; 0931-0509
    ISSN (online) 1460-2385
    ISSN 0931-0509
    DOI 10.1093/ndt/gfn391
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Ultrasonographic evaluation of parathyroid hyperplasia in dialysis patients.

    Pavlovic, Drasko / Tomic Brzac, Hrvojka

    TheScientificWorldJournal

    2006  Volume 6, Page(s) 1599–1608

    Abstract: Secondary hyperparathyroidism (SHPT) is one of the most common complications in patients with chronic kidney disease (CKD). Bone and mineral disorders, increased morbidity and mortality are the consequences of SHPT. Therefore, prevention and control of ... ...

    Abstract Secondary hyperparathyroidism (SHPT) is one of the most common complications in patients with chronic kidney disease (CKD). Bone and mineral disorders, increased morbidity and mortality are the consequences of SHPT. Therefore, prevention and control of hyperparathyroidism is one of the main objectives in the management of patients with CKD, particularly in dialysis patients. It is well known that SHPT in CKD is not only a state of increased parathyroid hormone (PTH) synthesis and secretion, but more importantly, it is a state of parathyroid gland (PTG) hyperplasia. The serum concentration of intact PTH is the main method used to assess PTG overactivity. Unfortunately, estimating the size and shape of the PTG in SHPT diagnosis, i.e., parathyroid hyperplasia, is still neglected. Among the various procedures, ultrasonography could be the method of choice to detect PTG size and shape because of its simplicity and noninvasiveness. This method can be sufficiently sensitive to distinguish diffuse and nodular hyperplasia.
    MeSH term(s) Chronic Disease ; Dialysis ; Disease Progression ; Humans ; Hyperplasia/diagnostic imaging ; Hyperplasia/etiology ; Hyperplasia/pathology ; Kidney Diseases/complications ; Parathyroid Diseases/diagnostic imaging ; Parathyroid Diseases/etiology ; Parathyroid Diseases/pathology ; Ultrasonography
    Language English
    Publishing date 2006-12-15
    Publishing country United States
    Document type Journal Article
    ISSN 1537-744X
    ISSN (online) 1537-744X
    DOI 10.1100/tsw.2006.273
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Ultrasonographic Evaluation of Parathyroid Hyperplasia in Dialysis Patients

    Drasko Pavlovic / Hrvojka Tomic Brzac

    The Scientific World Journal, Vol 6, Pp 1599-

    2006  Volume 1608

    Abstract: Secondary hyperparathyroidism (SHPT) is one of the most common complications in patients with chronic kidney disease (CKD). Bone and mineral disorders, increased morbidity and mortality are the consequences of SHPT. Therefore, prevention and control of ... ...

    Abstract Secondary hyperparathyroidism (SHPT) is one of the most common complications in patients with chronic kidney disease (CKD). Bone and mineral disorders, increased morbidity and mortality are the consequences of SHPT. Therefore, prevention and control of hyperparathyroidism is one of the main objectives in the management of patients with CKD, particularly in dialysis patients.It is well known that SHPT in CKD is not only a state of increased parathyroid hormone (PTH) synthesis and secretion, but more importantly, it is a state of parathyroid gland (PTG) hyperplasia. The serum concentration of intact PTH is the main method used to assess PTG overactivity. Unfortunately, estimating the size and shape of the PTG in SHPT diagnosis, i.e., parathyroid hyperplasia, is still neglected. Among the various procedures, ultrasonography could be the method of choice to detect PTG size and shape because of its simplicity and noninvasiveness. This method can be sufficiently sensitive to distinguish diffuse and nodular hyperplasia.
    Keywords Technology ; T ; Medicine ; R ; Science ; Q
    Language English
    Publishing date 2006-01-01T00:00:00Z
    Publisher Hindawi Limited
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article: Ultrazvucne metode u dijagnostici renalne osteodistrofije.

    Tomić-Brzac, Hrvojka / Pavlović, Drasko

    Acta medica Croatica : casopis Hravatske akademije medicinskih znanosti

    2004  Volume 58, Issue 1, Page(s) 43–49

    Abstract: Bone disease, i.e. renal osteodystrophy, is commonly seen in patients with chronic renal failure. It encompasses all the disorders of mineral and bone metabolism associated with chronic renal insufficiency, i.e. secondary hyperparathyroidism, retention ... ...

    Title translation Ultrasonography methods in the diagnosis of renal osteodystrophy.
    Abstract Bone disease, i.e. renal osteodystrophy, is commonly seen in patients with chronic renal failure. It encompasses all the disorders of mineral and bone metabolism associated with chronic renal insufficiency, i.e. secondary hyperparathyroidism, retention and accumulation of beta 2 microglobulin and aluminum. The most frequent cause of renal osteodystrophy is secondary hyperthyroidism, with a consequence of high turnover bone disease. Secondary hyperparathyroidism, i.e. increased parathyroid hormone (PTH) secretion and parathyroid gland hyperplasia, develops early in the course of chronic renal insufficiency. Hypocalcemia, phosphate retention and deficiency of calcitriol stimulate PTH synthesis and secretion and parathyroid cell proliferation, i.e. hyperplasia. Parathyroid cell proliferation is initially polyclonal (diffuse hyperplasia), and later it is monoclonal or multiclonal (nodular hyperplasia). Calcitriol receptors as well as calcium-sensing receptors are significantly reduced in parathyroid glands in nodular hyperplasia. Patients with such parathyroid gland hyperplasia are often resistant to vitamin D therapy. A specific form of bone disease is beta 2 amyloidosis. Destructive arthropathy, cystic changes and carpal tunnel syndrome are clinical manifestations of dialysis-related amyloidosis, which is one of the major complications in patients on longterm hemodialysis. Aluminum intoxication leads to the low turnover bone disease and consequential osteomalacia or aplastic bone lesions, the cause of which has not yet been fully clarified. Ultrasound can be a useful, economical and noninvasive method in the evaluation of renal osteodystrophy. Ultrasound waves are very important for noninvasive imaging of soft tissue, especially parathyroid glands, pathologic changes of the joints, and for detection of metastatic calcifications. They are also useful in the evaluation of skeletal status in dialysis patients. Ultrasound waves of a frequency above the limit of human hearing are used in the morphological diagnosis of parathyroid gland. Today, because of its simplicity and non-invasiveness, it is a generally accepted method for the detection of enlarged parathyroid gland in patients with secondary hyperparathyroidism, for the monitoring of pathologic changes, and for making decisions on the method of treatment based on the size and number of parathyroid glands. Ultrasound can distinguish nodal from diffuse parathyroid hyperplasia. Under ultrasound guidance it is possible to perform fine needle aspiration biopsy, to confirm ultrasound findings, and percutaneous inactivation of parathyroid gland (PEI) with alcohol. Ultrasound is useful in the diagnosis of pathologic changes of the musculoskeletal system in patients with beta 2 amyloidosis, to assess the process of its spread, especially in the shoulder joint where the changes are most pronounced (rotator cuff thickness, amyloid deposits as hyperechogenic pads, and detection of fluid in the joint), but it can also be used to examine other joints as well as soft tissue in which metastatic calcifications may occur. Standard ultrasound equipment (pulse-echo) and linear probe of 5-13 MHz are used, also serving for ultrasound examination of the neck, joints and soft tissue. Quantitative bone ultrasonometry is based on different physical characteristics of the ultrasound including: transmission, Speed Of Sound (SOS) in meters/sec and Broad Band Attenuation (BUA) in dB/MHz, and different concepts of the apparatus. These parameters depend on the strength and architecture of the bones and describe better the changes in bone structure in dialysis patients by calculation of the Stiffness Index (QUI), better than the standard bone densitometry by dual-energy x-ray absorptiometry, which only measures bone density. Combined ultrasound measurement of the bone in several locations may be successful in monitoring dialysis patients.
    MeSH term(s) Bone and Bones/diagnostic imaging ; Chronic Kidney Disease-Mineral and Bone Disorder/diagnostic imaging ; Chronic Kidney Disease-Mineral and Bone Disorder/etiology ; Humans ; Hyperparathyroidism, Secondary/complications ; Hyperparathyroidism, Secondary/diagnostic imaging ; Kidney Failure, Chronic/complications ; Ultrasonography
    Language Croatian
    Publishing date 2004
    Publishing country Croatia
    Document type Journal Article ; Review
    ZDB-ID 1108025-5
    ISSN 1330-0164 ; 0375-8338
    ISSN 1330-0164 ; 0375-8338
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: The screening and evaluation of potential clinically significant HIV drug combinations against the SARS-CoV-2 virus.

    Tomić, Draško / Davidović, Davor / Szasz, Attila Marcel / Rezeli, Melinda / Pirkić, Boris / Petrik, Jozsef / Vrca, Vesna Bačić / Janđel, Vladimir / Lipić, Tomislav / Skala, Karolj / Mesarić, Josip / Periša, Marija Milković / Šojat, Zorislav / Rogina, Branka Medved

    Informatics in medicine unlocked

    2021  Volume 23, Page(s) 100529

    Abstract: Spike glycoprotein is essential for the reproduction of the SARS-CoV-2 virus, and its inhibition using already approved antiviral drugs may open new avenues for treatment of patients with the COVID-19 disease. Because of that we analyzed the inhibition ... ...

    Abstract Spike glycoprotein is essential for the reproduction of the SARS-CoV-2 virus, and its inhibition using already approved antiviral drugs may open new avenues for treatment of patients with the COVID-19 disease. Because of that we analyzed the inhibition of SARS-CoV-2 spike glycoprotein with FDA-approved antiviral drugs and their double and triple combinations. We used the VINI in silico model of cancer to perform this virtual drug screening, showing HIV drugs to be the most effective. Besides, the combination of cobicistat-abacavir-rilpivirine HIV drugs demonstrated the highest in silico efficacy of inhibiting SARS-CoV-2 spike glycoprotein. Therefore, a clinical trial of cobicistat-abacavir-rilpivirine on a limited number of COVID-19 patients in moderately severe and severe condition is warranted.
    Language English
    Publishing date 2021-01-30
    Publishing country England
    Document type Journal Article
    ISSN 2352-9148
    ISSN 2352-9148
    DOI 10.1016/j.imu.2021.100529
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: The screening and evaluation of potential clinically significant HIV drug combinations against the SARS-CoV-2 virus

    Draško Tomić / Davor Davidović / Attila Marcel Szasz / Melinda Rezeli / Boris Pirkić / Jozsef Petrik / Vesna Bačić Vrca / Vladimir Janđel / Tomislav Lipić / Karolj Skala / Josip Mesarić / Marija Milković Periša / Zorislav Šojat / Branka Medved Rogina

    Informatics in Medicine Unlocked, Vol 23, Iss , Pp 100529- (2021)

    2021  

    Abstract: Spike glycoprotein is essential for the reproduction of the SARS-CoV-2 virus, and its inhibition using already approved antiviral drugs may open new avenues for treatment of patients with the COVID-19 disease. Because of that we analyzed the inhibition ... ...

    Abstract Spike glycoprotein is essential for the reproduction of the SARS-CoV-2 virus, and its inhibition using already approved antiviral drugs may open new avenues for treatment of patients with the COVID-19 disease. Because of that we analyzed the inhibition of SARS-CoV-2 spike glycoprotein with FDA-approved antiviral drugs and their double and triple combinations. We used the VINI in silico model of cancer to perform this virtual drug screening, showing HIV drugs to be the most effective. Besides, the combination of cobicistat-abacavir-rilpivirine HIV drugs demonstrated the highest in silico efficacy of inhibiting SARS-CoV-2 spike glycoprotein. Therefore, a clinical trial of cobicistat-abacavir-rilpivirine on a limited number of COVID-19 patients in moderately severe and severe condition is warranted.
    Keywords SARS-CoV-2 spike glycoprotein ; HIV cocktail Therapy ; Inhibition efficiency ; Virtual drug screening ; Antiviral drugs ; COVID-19 ; Computer applications to medicine. Medical informatics ; R858-859.7
    Subject code 610
    Language English
    Publishing date 2021-01-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article: Prevention and treatment of secondary hyperparathyroidism: still a challenge for the nephrologist?

    Pavlović, Drasko / Brzac, Hrvojka Tomić

    Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association

    2003  Volume 18 Suppl 5, Page(s) v45–6

    Abstract: Secondary hyperparathyroidism is a well known complication of chronic renal insufficency. It is not only a state of increased parathyroid hormone secre-tion but also a state of parathyroid gland hyperplasia. Prevention and treatment of secondary ... ...

    Abstract Secondary hyperparathyroidism is a well known complication of chronic renal insufficency. It is not only a state of increased parathyroid hormone secre-tion but also a state of parathyroid gland hyperplasia. Prevention and treatment of secondary hyperpara-thyroidism is a huge challenge for the nephrologist, despite new agents for the treatment of hyperphos-phataemia, new vitamin D analogues and calci-mimetics. The importance of parathyroid gland hyperplasia and the possibility of its reduction frequently are neglected issues. Ultrasonography could be very useful in detection of parathyroid gland size and shape and in the management of secondary hyperparathyroidism.
    MeSH term(s) Drug Therapy, Combination ; Epoxy Compounds/administration & dosage ; Ergocalciferols/administration & dosage ; Female ; Follow-Up Studies ; Humans ; Hyperparathyroidism, Secondary/diagnostic imaging ; Hyperparathyroidism, Secondary/drug therapy ; Hyperparathyroidism, Secondary/prevention & control ; Kidney Failure, Chronic/complications ; Kidney Failure, Chronic/diagnosis ; Male ; Nephrology/standards ; Nephrology/trends ; Polyamines ; Polyethylenes/administration & dosage ; Risk Assessment ; Sevelamer ; Severity of Illness Index ; Treatment Outcome ; Ultrasonography, Doppler
    Chemical Substances Epoxy Compounds ; Ergocalciferols ; Polyamines ; Polyethylenes ; 1 alpha-hydroxyergocalciferol (3DIZ9LF5Y9) ; Sevelamer (9YCX42I8IU)
    Language English
    Publishing date 2003-05-16
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 90594-x
    ISSN 1460-2385 ; 0931-0509
    ISSN (online) 1460-2385
    ISSN 0931-0509
    DOI 10.1093/ndt/gfg1045
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Neck swelling secondary to severe hyperplasia of autotransplanted parathyroid tissue following parathyroidectomy

    Pavlovic Drasko / Orlic Lidija / Tomic-Brzac Hrvojka / Pavlovic Nikola / Petric Vlado

    Annals of Saudi Medicine, Vol 28, Iss 6, Pp 476-

    2008  Volume 477

    Keywords Medicine ; R
    Language English
    Publishing date 2008-01-01T00:00:00Z
    Publisher King Faisal Specialist Hospital and Research Centre
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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