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  1. Article ; Online: The ubiquitin ligase TRIM32 promotes the autophagic response to Mycobacterium tuberculosis infection in macrophages.

    Romagnoli, Alessandra / Di Rienzo, Martina / Petruccioli, Elisa / Fusco, Carmela / Palucci, Ivana / Micale, Lucia / Mazza, Tommaso / Delogu, Giovanni / Merla, Giuseppe / Goletti, Delia / Piacentini, Mauro / Fimia, Gian Maria

    Cell death & disease

    2023  Volume 14, Issue 8, Page(s) 505

    Abstract: Mycobacterium tuberculosis (Mtb) is known to evade host immune responses and persist in macrophages for long periods. A mechanism that the host uses to combat Mtb is xenophagy, a selective form of autophagy that targets intracellular pathogens for ... ...

    Abstract Mycobacterium tuberculosis (Mtb) is known to evade host immune responses and persist in macrophages for long periods. A mechanism that the host uses to combat Mtb is xenophagy, a selective form of autophagy that targets intracellular pathogens for degradation. Ubiquitination of Mtb or Mtb-containing compartments is a key event to recruit the autophagy machinery and mediate the bacterial delivery to the lysosome. This event relies on the coordinated and complementary activity of different ubiquitin ligases, including PARKIN, SMURF1, and TRIM16. Because each of these factors is responsible for the ubiquitination of a subset of the Mtb population, it is likely that additional ubiquitin ligases are employed by macrophages to trigger a full xenophagic response during Mtb infection. In this study, we investigated the role TRIM proteins whose expression is modulated in response to Mtb or BCG infection of primary macrophages. These TRIMs were ectopically expressed in THP1 macrophage cell line to assess their impact on Mtb replication. This screening identified TRIM32 as a novel player involved in the intracellular response to Mtb infection, which promotes autophagy-mediated Mtb degradation. The role of TRIM32 in xenophagy was further confirmed by silencing TRIM32 expression in THP1 cells, which causes increased intracellular growth of Mtb associated to impaired Mtb ubiquitination, reduced recruitment of the autophagy proteins NDP52/CALCOCO2 and BECLIN 1/BECN1 to Mtb and autophagosome formation. Overall, these findings suggest that TRIM32 plays an important role in the host response to Mtb infection through the induction of autophagy, representing a promising target for host-directed tuberculosis therapies.
    MeSH term(s) Humans ; Ubiquitin/metabolism ; Macrophages/metabolism ; Tuberculosis/genetics ; Autophagy/physiology ; Mycobacterium tuberculosis ; Tripartite Motif Proteins/genetics ; Tripartite Motif Proteins/metabolism ; Ubiquitin-Protein Ligases/genetics ; Ubiquitin-Protein Ligases/metabolism ; Transcription Factors/metabolism
    Chemical Substances Ubiquitin ; TRIM16 protein, human (EC 2.3.2.27) ; Tripartite Motif Proteins ; Ubiquitin-Protein Ligases (EC 2.3.2.27) ; TRIM32 protein, human (EC 2.3.2.27) ; Transcription Factors ; SMURF1 protein, human (EC 2.3.2.26)
    Language English
    Publishing date 2023-08-05
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2541626-1
    ISSN 2041-4889 ; 2041-4889
    ISSN (online) 2041-4889
    ISSN 2041-4889
    DOI 10.1038/s41419-023-06026-1
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Mitochondrial Interactome: A Focus on Antiviral Signaling Pathways.

    Refolo, Giulia / Vescovo, Tiziana / Piacentini, Mauro / Fimia, Gian Maria / Ciccosanti, Fabiola

    Frontiers in cell and developmental biology

    2020  Volume 8, Page(s) 8

    Abstract: In the last years, proteomics has represented a valuable approach to elucidate key aspects in the regulation of type I/III interferons (IFNs) and autophagy, two main processes involved in the response to viral infection, to unveil the molecular ... ...

    Abstract In the last years, proteomics has represented a valuable approach to elucidate key aspects in the regulation of type I/III interferons (IFNs) and autophagy, two main processes involved in the response to viral infection, to unveil the molecular strategies that viruses have evolved to counteract these processes. Besides their main metabolic roles, mitochondria are well recognized as pivotal organelles in controlling signaling pathways essential to restrain viral infections. In particular, a major role in antiviral defense is played by mitochondrial antiviral signaling (MAVS) protein, an adaptor protein that coordinates the activation of IFN inducing pathways and autophagy at the mitochondrial level. Here, we provide an overview of how mass spectrometry-based studies of protein-protein interactions and post-translational modifications (PTMs) have fostered our understanding of the molecular mechanisms that control the mitochondria-mediated antiviral immunity.
    Language English
    Publishing date 2020-02-14
    Publishing country Switzerland
    Document type Journal Article ; Review
    ZDB-ID 2737824-X
    ISSN 2296-634X
    ISSN 2296-634X
    DOI 10.3389/fcell.2020.00008
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: AMBRA1 regulates mitophagy by interacting with ATAD3A and promoting PINK1 stability.

    Di Rienzo, Martina / Romagnoli, Alessandra / Ciccosanti, Fabiola / Refolo, Giulia / Consalvi, Veronica / Arena, Giuseppe / Valente, Enza Maria / Piacentini, Mauro / Fimia, Gian Maria

    Autophagy

    2021  Volume 18, Issue 8, Page(s) 1752–1762

    Abstract: PINK1 accumulation at the outer mitochondrial membrane (OMM) is a key event required to signal depolarized mitochondria to the autophagy machinery. How this early step is, in turn, modulated by autophagy proteins remains less characterized. Here, we show ...

    Abstract PINK1 accumulation at the outer mitochondrial membrane (OMM) is a key event required to signal depolarized mitochondria to the autophagy machinery. How this early step is, in turn, modulated by autophagy proteins remains less characterized. Here, we show that, upon mitochondrial depolarization, the proautophagic protein AMBRA1 is recruited to the OMM and interacts with PINK1 and ATAD3A, a transmembrane protein that mediates mitochondrial import and degradation of PINK1. Downregulation of AMBRA1 expression results in reduced levels of PINK1 due to its enhanced degradation by the mitochondrial protease LONP1, which leads to a decrease in PINK1-mediated ubiquitin phosphorylation and mitochondrial PRKN/PARKIN recruitment. Notably, ATAD3A silencing rescues defective PINK1 accumulation in AMBRA1-deficient cells upon mitochondrial damage. Overall, our findings underline an upstream contribution of AMBRA1 in the control of PINK1-PRKN mitophagy by interacting with ATAD3A and promoting PINK1 stability. This novel regulatory element may account for changes of PINK1 levels in neuropathological conditions.
    MeSH term(s) Adaptor Proteins, Signal Transducing ; Autophagy ; Carbonyl Cyanide m-Chlorophenyl Hydrazone/pharmacology ; Mitochondria/metabolism ; Mitophagy ; Protein Kinases/metabolism ; Ubiquitin-Protein Ligases/metabolism
    Chemical Substances AMBRA1 protein, human ; Adaptor Proteins, Signal Transducing ; Carbonyl Cyanide m-Chlorophenyl Hydrazone (555-60-2) ; Ubiquitin-Protein Ligases (EC 2.3.2.27) ; Protein Kinases (EC 2.7.-)
    Language English
    Publishing date 2021-11-19
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2454135-7
    ISSN 1554-8635 ; 1554-8627
    ISSN (online) 1554-8635
    ISSN 1554-8627
    DOI 10.1080/15548627.2021.1997052
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: The Impact of Mevastatin on HCV Replication and Autophagy of Non-Transformed HCV Replicon Hepatocytes Is Influenced by the Extracellular Lipid Uptake.

    Vescovo, Tiziana / Refolo, Giulia / Manuelli, Matteo Ciancio / Tisone, Giuseppe / Piacentini, Mauro / Fimia, Gian Maria

    Frontiers in pharmacology

    2019  Volume 10, Page(s) 718

    Abstract: Statins efficiently inhibit cholesterol synthesis by blocking 3-hydroxy-3-methylglutaryl (HMG)-CoA reductase in the mevalonate pathway. However, the effect of statins on intracellular cholesterol is partially counterbalanced by a consequent increased ... ...

    Abstract Statins efficiently inhibit cholesterol synthesis by blocking 3-hydroxy-3-methylglutaryl (HMG)-CoA reductase in the mevalonate pathway. However, the effect of statins on intracellular cholesterol is partially counterbalanced by a consequent increased uptake of extracellular lipid sources. Hepatitis C virus (HCV) infection induces intracellular accumulation of cholesterol by promoting both new synthesis and uptake of circulating lipoproteins, which is required for HCV replication and release. Hepatocytes respond to the increase in intracellular cholesterol levels by inducing lipophagy, a selective type of autophagy mediating the degradation of lipid deposits within lysosomes. In a cellular system of HCV replication based on HuH7 hepatoma cells, statin treatment was shown to be sufficient to decrease intracellular cholesterol, which is accompanied by reduced HCV replication and decreased lipophagy, and has no apparent impact on endocytosis-mediated cholesterol uptake. To understand whether these results were influenced by an altered response of cholesterol influx in hepatoma cells, we analyzed the effect of statins in non-transformed murine hepatocytes (MMHD3) harboring subgenomic HCV replicons. Notably, we found that total amount of cholesterol is increased in MMHD3 cells upon mevastatin treatment, which is associated with increased HCV replication and lipophagy. Conversely, mevastatin is able to reduce cholesterol amounts only when cells are grown in the presence of delipidated serum to prevent extracellular lipid uptake. Under this condition, HCV replication is reduced and autophagy flux is severely impaired. Altogether, these results indicate that both
    Language English
    Publishing date 2019-06-26
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2587355-6
    ISSN 1663-9812
    ISSN 1663-9812
    DOI 10.3389/fphar.2019.00718
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Methods to Study the BECN1 Interactome in the Course of Autophagic Responses.

    Antonioli, M / Ciccosanti, F / Dengjel, J / Fimia, G M

    Methods in enzymology

    2016  Volume 587, Page(s) 429–445

    Abstract: Autophagy is an extremely dynamic process that mediates the rapid degradation of intracellular components in response to different stress conditions. The autophagic response is executed by specific protein complexes, whose function is regulated by ... ...

    Abstract Autophagy is an extremely dynamic process that mediates the rapid degradation of intracellular components in response to different stress conditions. The autophagic response is executed by specific protein complexes, whose function is regulated by posttranslational modifications and interactions with positive and negative regulators. A comprehensive analysis of how autophagy complexes are temporally modified upon stress stimuli is therefore particularly relevant to understand how this pathway is regulated. Here, we describe a method to define the protein-protein interaction network of a central complex involved in autophagy induction, the Beclin 1 complex. This method is based on the quantitative comparison of protein complexes immunopurified at different time points using a stable isotope labeling by amino acids in cell culture approach. Understanding how the Beclin 1 complex dynamically changes in response to different stress stimuli may provide useful insights to disclose novel molecular mechanisms responsible for the dysregulation of autophagy in pathological conditions, such as cancer, neurodegeneration, and infections.
    MeSH term(s) Autophagy/physiology ; Beclin-1/analysis ; Beclin-1/metabolism ; Cell Line ; Chromatography, Liquid/methods ; Humans ; Isotope Labeling/methods ; Protein Interaction Mapping/methods ; Tandem Mass Spectrometry/methods
    Chemical Substances BECN1 protein, human ; Beclin-1
    Language English
    Publishing date 2016-12-15
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1557-7988 ; 0076-6879
    ISSN (online) 1557-7988
    ISSN 0076-6879
    DOI 10.1016/bs.mie.2016.09.069
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Role of autophagy in HIV infection and pathogenesis.

    Nardacci, R / Ciccosanti, F / Marsella, C / Ippolito, G / Piacentini, M / Fimia, G M

    Journal of internal medicine

    2017  Volume 281, Issue 5, Page(s) 422–432

    Abstract: The aim of autophagy is to re-establish homeostasis in response to a variety of stress conditions. By forming double-membrane vesicles, autophagy engulfs damaged or superfluous cytoplasmic material and recycles degradation products for new synthesis or ... ...

    Abstract The aim of autophagy is to re-establish homeostasis in response to a variety of stress conditions. By forming double-membrane vesicles, autophagy engulfs damaged or superfluous cytoplasmic material and recycles degradation products for new synthesis or energy production. Of note, the same mechanism is used to capture pathogens and has important implications in both innate and adaptive immunity. To establish a chronic infection, pathogens have therefore evolved multiple mechanisms to evade autophagy-mediated degradation. HIV infection represents one of the best characterized systems in which autophagy is disarmed by a virus using multiple strategies to prevent the sequestration and degradation of its proteins and to establish a chronic infection. HIV alters autophagy at various stages of the process in both infected and bystander cells. In particular, the HIV proteins TAT, NEF and ENV are involved in this regulation by either blocking or stimulating autophagy through direct interaction with autophagy proteins and/or modulation of the mTOR pathway. Although the roles of autophagy during HIV infection are multiple and vary amongst the different cell types, several lines of evidence point to a potential beneficial effect of stimulating autophagy-mediated lysosomal degradation to potentiate the immune response to HIV. Characterization of the molecular mechanisms regulating selective autophagy is expected to be valuable for developing new drugs able to specifically enhance the anti-HIV response.
    MeSH term(s) Autophagy/physiology ; Autophagy-Related Proteins/immunology ; CD4-Positive T-Lymphocytes/immunology ; Central Nervous System Infections/immunology ; Dendritic Cells/immunology ; HIV/immunology ; HIV/physiology ; HIV Infections/immunology ; Humans ; Immunity, Cellular/immunology ; Macrophages/immunology ; Virus Replication/physiology
    Chemical Substances Autophagy-Related Proteins
    Language English
    Publishing date 2017-02-16
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 96274-0
    ISSN 1365-2796 ; 0954-6820
    ISSN (online) 1365-2796
    ISSN 0954-6820
    DOI 10.1111/joim.12596
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: The interplay between SARS-CoV-2 infected airway epithelium and immune cells modulates regulatory/inflammatory signals.

    Bordoni, Veronica / Matusali, Giulia / Mariotti, Davide / Antonioli, Manuela / Cimini, Eleonora / Sacchi, Alessandra / Tartaglia, Eleonora / Casetti, Rita / Grassi, Germana / Notari, Stefania / Castilletti, Concetta / Fimia, Gian Maria / Capobianchi, Maria Rosaria / Ippolito, Giuseppe / Agrati, Chiara

    iScience

    2022  Volume 25, Issue 2, Page(s) 103854

    Abstract: ... of several immunoregulatory/inflammatory signals (e.g., IL-35, IL-27, and IL-34). Moreover, these mediators were found ...

    Abstract To assess the cross-talk between immune cells and respiratory tract during SARS-CoV-2 infection, we analyzed the relationships between the inflammatory response induced by SARS-CoV-2 replication and immune cells phenotype in a reconstituted organotypic human airway epithelium (HAE). The results indicated that immune cells failed to inhibit SARS-CoV-2 replication in the HAE model. In contrast, immune cells strongly affected the inflammatory profile induced by SARS-CoV-2 infection, dampening the production of several immunoregulatory/inflammatory signals (e.g., IL-35, IL-27, and IL-34). Moreover, these mediators were found inversely correlated with innate immune cell frequency (NK and γδ T cells) and directly with CD8 T cells. The enriched signals associated with NK and CD8 T cells highlighted the modulation of pathways induced by SARS-CoV-2 infected HAE. These findings are useful to depict the cell-cell communication mechanisms necessary to develop novel therapeutic strategies aimed to promote an effective immune response.
    Language English
    Publishing date 2022-01-31
    Publishing country United States
    Document type Journal Article
    ISSN 2589-0042
    ISSN (online) 2589-0042
    DOI 10.1016/j.isci.2022.103854
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Molecular mechanisms of selective autophagy.

    Fimia, G M / Kroemer, G / Piacentini, M

    Cell death and differentiation

    2012  Volume 20, Issue 1, Page(s) 1–2

    MeSH term(s) Animals ; Autophagy/physiology ; Humans
    Language English
    Publishing date 2012-12-07
    Publishing country England
    Document type Editorial ; Introductory Journal Article
    ZDB-ID 1225672-9
    ISSN 1476-5403 ; 1350-9047
    ISSN (online) 1476-5403
    ISSN 1350-9047
    DOI 10.1038/cdd.2012.97
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Molecular mechanisms of hepatitis C virus-induced hepatocellular carcinoma.

    Vescovo, T / Refolo, G / Vitagliano, G / Fimia, G M / Piacentini, M

    Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases

    2016  Volume 22, Issue 10, Page(s) 853–861

    Abstract: Hepatitis C virus (HCV) is a major leading cause of hepatocellular carcinoma (HCC). HCV-induced hepatocarcinogenesis is a multistep process resulting from a combination of pathway alterations that are either caused directly by viral factors or immune ... ...

    Abstract Hepatitis C virus (HCV) is a major leading cause of hepatocellular carcinoma (HCC). HCV-induced hepatocarcinogenesis is a multistep process resulting from a combination of pathway alterations that are either caused directly by viral factors or immune mediated as a consequence of a chronic state of inflammation. Host genetic variation is now emerging as an additional element that contribute to increase the risk of developing HCC. The advent of direct-acting antiviral agents foresees a rapid decline of HCC rate in HCV patients. However, a full understanding of the HCV-mediated tumourigenic process is required to elucidate if pro-oncogenic signatures may persist after virus clearance, and to identify novel tools for HCC prevention and therapy. In this review, we summarize the current knowledge of the molecular mechanisms responsible for HCV-induced hepatocarcinogenesis.
    MeSH term(s) Antiviral Agents/pharmacology ; Antiviral Agents/therapeutic use ; Carcinogenesis ; Carcinoma, Hepatocellular/genetics ; Carcinoma, Hepatocellular/virology ; Cell Transformation, Neoplastic/drug effects ; Cell Transformation, Neoplastic/genetics ; Hepacivirus/genetics ; Hepatitis C/complications ; Hepatitis C/drug therapy ; Hepatitis C/genetics ; Humans ; Liver Neoplasms/genetics ; Liver Neoplasms/virology
    Chemical Substances Antiviral Agents
    Language English
    Publishing date 2016-10
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 1328418-6
    ISSN 1469-0691 ; 1470-9465 ; 1198-743X
    ISSN (online) 1469-0691
    ISSN 1470-9465 ; 1198-743X
    DOI 10.1016/j.cmi.2016.07.019
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Toward the understanding of autophagy regulation and its interplay with cell death pathways.

    Fimia, G M / Piacentini, M

    Cell death and differentiation

    2009  Volume 16, Issue 7, Page(s) 933–934

    MeSH term(s) Adaptor Proteins, Signal Transducing/metabolism ; Animals ; Autophagy/physiology ; Cell Death/physiology ; Humans ; Immunity, Active/immunology ; Immunity, Innate/immunology ; Microtubule-Associated Proteins/metabolism ; Tumor Suppressor Proteins/metabolism
    Chemical Substances Adaptor Proteins, Signal Transducing ; Microtubule-Associated Proteins ; Tumor Suppressor Proteins
    Language English
    Publishing date 2009-07
    Publishing country England
    Document type Editorial ; Introductory Journal Article
    ZDB-ID 1225672-9
    ISSN 1476-5403 ; 1350-9047
    ISSN (online) 1476-5403
    ISSN 1350-9047
    DOI 10.1038/cdd.2009.47
    Database MEDical Literature Analysis and Retrieval System OnLINE

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