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  1. Article: Post-Mortem Microbiology: Retrospective Analysis of Infections Caused by

    Jermakow, Katarzyna / Rorat, Marta

    Pathogens (Basel, Switzerland)

    2022  Volume 11, Issue 2

    Abstract: Post-mortem microbiological tests are one of the basic methods for diagnosing the etiology of infections in forensic pathology. One of the major groups of microorganisms abundant in various parts of the human body during life and after death ... ...

    Abstract Post-mortem microbiological tests are one of the basic methods for diagnosing the etiology of infections in forensic pathology. One of the major groups of microorganisms abundant in various parts of the human body during life and after death is
    Language English
    Publishing date 2022-02-03
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2695572-6
    ISSN 2076-0817
    ISSN 2076-0817
    DOI 10.3390/pathogens11020204
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Unpacking the Complexity of COVID-19 Fatalities: Adverse Events as Contributing Factors-A Single-Center, Retrospective Analysis of the First Two Years of the Pandemic.

    Zińczuk, Aleksander / Rorat, Marta / Simon, Krzysztof / Jurek, Tomasz

    Viruses

    2023  Volume 15, Issue 7

    Abstract: In a retrospective analysis of 477 fatal COVID-19 cases hospitalised at a single medical centre during the period from 6 March 2020 to 30 June 2022, several factors defining those patients at admission were assessed, as well as the course of the ... ...

    Abstract In a retrospective analysis of 477 fatal COVID-19 cases hospitalised at a single medical centre during the period from 6 March 2020 to 30 June 2022, several factors defining those patients at admission were assessed, as well as the course of the hospitalisation and factors contributing to death. There was a predominance of men (59.3% (283)) burdened by comorbidities, with increased inflammation at admission. Patients aged ≥ 81 years were significantly more likely to be admitted to and die in infectious diseases units (IDU) due to respiratory failure, their hospital stays were shorter, and they were most likely not to receive specialist treatment. The most common COVID-19 complications included acute kidney injury in 31.2% (149) patients and thromboembolic complications in 23.5% (112). The course of hospitalisation was complicated by healthcare-associated infections (HAI) in 33.3% (159) of cases, more often in those treated with baricitinib (
    MeSH term(s) Male ; Humans ; Female ; COVID-19 ; SARS-CoV-2 ; Retrospective Studies ; Pandemics ; Respiratory Insufficiency/epidemiology
    Language English
    Publishing date 2023-06-24
    Publishing country Switzerland
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2516098-9
    ISSN 1999-4915 ; 1999-4915
    ISSN (online) 1999-4915
    ISSN 1999-4915
    DOI 10.3390/v15071430
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Post-Mortem Microbiology

    Katarzyna Jermakow / Marta Rorat

    Pathogens, Vol 11, Iss 204, p

    Retrospective Analysis of Infections Caused by Enterococcus Strains

    2022  Volume 204

    Abstract: Post-mortem microbiological tests are one of the basic methods for diagnosing the etiology of infections in forensic pathology. One of the major groups of microorganisms abundant in various parts of the human body during life and after death is ... ...

    Abstract Post-mortem microbiological tests are one of the basic methods for diagnosing the etiology of infections in forensic pathology. One of the major groups of microorganisms abundant in various parts of the human body during life and after death is Enterococcus spp. Depending on the area of the body involved and the patient’s condition, enterococci can be considered to be a microbiome, transient flora or a pathogen responsible for infection. The data used for the analysis were 12 medico-legal autopsy and microbiological reports. Enterococcus spp. was isolated in 10 out of 12 cultures of blood samples collected post-mortem. The abdominal origin of enterococci in the blood was detected in 8 cases. The non-abdominal origin of enterococci in the blood was associated with a skin and soft tissue infection, purulent pneumonia and infective endocarditis. These results suggest that enterococci may be considered a cause of severe infections and with high likelihood. Microbiological cultures are a valuable source of information for helping to confirm the cause of infection. Interpretation of the results of post-mortem examinations must be carried out on the basis of data collected before and after death with the participation of specialists from various fields.
    Keywords autopsy ; bacterial infection ; differential diagnosis ; Medicine ; R
    Subject code 630
    Language English
    Publishing date 2022-02-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article: EASIX, Modified EASIX and Simplified EASIX as an Early Predictor for Intensive Care Unit Admission and Mortality in Severe COVID-19 Patients.

    Zińczuk, Aleksander / Rorat, Marta / Simon, Krzysztof / Jurek, Tomasz

    Journal of personalized medicine

    2022  Volume 12, Issue 7

    Abstract: COVID-19 receives a lot of attention due to its threat to global public health. Research is ongoing to find universal methods to assess the baseline health status of a patient to determine prognosis and management strategies. This study aims to assess ... ...

    Abstract COVID-19 receives a lot of attention due to its threat to global public health. Research is ongoing to find universal methods to assess the baseline health status of a patient to determine prognosis and management strategies. This study aims to assess the predictive potential of the EASIX (Endothelial Activation and Stress Index) and two of its modifications (mEASIX and sEASIX) in terms of the need for admission to the ICU (intensive care unit), the use of IMV (invasive mechanical ventilation) and death due to COVID-19. The medical data of 370 severely ill patients hospitalised in the COVID-19 departments of the Regional Specialist Hospital in Wroclaw (Poland), including the ICU, were analysed retrospectively. The mortality rate in the group studied was 65.7% (243 cases). In the case of all three indices, EASIX, mEASIX and sEASIX, there was a statistically significant correlation between the need for admission to the ICU (p = 0.026, p = 0.019, p = 0.001, respectively) and the risk of death (p < 0.001). In terms of the risk of death, the high values of the assessed indices (EASIX ≥ 2.36, mEASIX ≥ 704.03, sEASIX ≥ 3.81) were characterised by low sensitivity (≤40%), high specificity (approximately 90%) and low NPV (negative predictive value) (approximately 40%) with high PPV (positive predictive value) (approximately 80%). Due to the ease of implementation and the low cost of performing basic laboratory tests, the above-mentioned indices can be used as an additional, but not universal tool for the initial assessment of the health condition of patients admitted to the hospital.
    Language English
    Publishing date 2022-06-21
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2662248-8
    ISSN 2075-4426
    ISSN 2075-4426
    DOI 10.3390/jpm12071022
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article: Post-Mortem Microbiology: Retrospective Analysis of Infections Caused by Enterococcus Strains

    Jermakow, Katarzyna / Rorat, Marta

    Pathogens. 2022 Feb. 03, v. 11, no. 2

    2022  

    Abstract: Post-mortem microbiological tests are one of the basic methods for diagnosing the etiology of infections in forensic pathology. One of the major groups of microorganisms abundant in various parts of the human body during life and after death is ... ...

    Abstract Post-mortem microbiological tests are one of the basic methods for diagnosing the etiology of infections in forensic pathology. One of the major groups of microorganisms abundant in various parts of the human body during life and after death is Enterococcus spp. Depending on the area of the body involved and the patient’s condition, enterococci can be considered to be a microbiome, transient flora or a pathogen responsible for infection. The data used for the analysis were 12 medico-legal autopsy and microbiological reports. Enterococcus spp. was isolated in 10 out of 12 cultures of blood samples collected post-mortem. The abdominal origin of enterococci in the blood was detected in 8 cases. The non-abdominal origin of enterococci in the blood was associated with a skin and soft tissue infection, purulent pneumonia and infective endocarditis. These results suggest that enterococci may be considered a cause of severe infections and with high likelihood. Microbiological cultures are a valuable source of information for helping to confirm the cause of infection. Interpretation of the results of post-mortem examinations must be carried out on the basis of data collected before and after death with the participation of specialists from various fields.
    Keywords Enterococcus ; blood ; death ; endocarditis ; flora ; forensic sciences ; humans ; information sources ; microbiome ; necropsy ; pathogens ; patients ; pneumonia ; retrospective studies ; tissues
    Language English
    Dates of publication 2022-0203
    Publishing place Multidisciplinary Digital Publishing Institute
    Document type Article
    ZDB-ID 2695572-6
    ISSN 2076-0817
    ISSN 2076-0817
    DOI 10.3390/pathogens11020204
    Database NAL-Catalogue (AGRICOLA)

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  6. Article ; Online: Data on the identification of microsatellite markers in

    Jaskulak, Marta / Vandenbulcke, Franck / Rorat, Agnieszka / Pauwels, Maxime / Zorena, Kararzyna / Grzmil, Paweł / Płytycz, Barbara

    Data in brief

    2022  Volume 45, Page(s) 108612

    Abstract: ... Eisenia ... ...

    Abstract Eisenia fetida
    Language English
    Publishing date 2022-09-18
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 2786545-9
    ISSN 2352-3409 ; 2352-3409
    ISSN (online) 2352-3409
    ISSN 2352-3409
    DOI 10.1016/j.dib.2022.108612
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: EASIX, Modified EASIX and Simplified EASIX as an Early Predictor for Intensive Care Unit Admission and Mortality in Severe COVID-19 Patients

    Aleksander Zińczuk / Marta Rorat / Krzysztof Simon / Tomasz Jurek

    Journal of Personalized Medicine, Vol 12, Iss 1022, p

    2022  Volume 1022

    Abstract: COVID-19 receives a lot of attention due to its threat to global public health. Research is ongoing to find universal methods to assess the baseline health status of a patient to determine prognosis and management strategies. This study aims to assess ... ...

    Abstract COVID-19 receives a lot of attention due to its threat to global public health. Research is ongoing to find universal methods to assess the baseline health status of a patient to determine prognosis and management strategies. This study aims to assess the predictive potential of the EASIX (Endothelial Activation and Stress Index) and two of its modifications (mEASIX and sEASIX) in terms of the need for admission to the ICU (intensive care unit), the use of IMV (invasive mechanical ventilation) and death due to COVID-19. The medical data of 370 severely ill patients hospitalised in the COVID-19 departments of the Regional Specialist Hospital in Wroclaw (Poland), including the ICU, were analysed retrospectively. The mortality rate in the group studied was 65.7% (243 cases). In the case of all three indices, EASIX, mEASIX and sEASIX, there was a statistically significant correlation between the need for admission to the ICU ( p = 0.026, p = 0.019, p = 0.001, respectively) and the risk of death ( p < 0.001). In terms of the risk of death, the high values of the assessed indices (EASIX ≥ 2.36, mEASIX ≥ 704.03, sEASIX ≥ 3.81) were characterised by low sensitivity (≤40%), high specificity (approximately 90%) and low NPV (negative predictive value) (approximately 40%) with high PPV (positive predictive value) (approximately 80%). Due to the ease of implementation and the low cost of performing basic laboratory tests, the above-mentioned indices can be used as an additional, but not universal tool for the initial assessment of the health condition of patients admitted to the hospital.
    Keywords Endothelial Activation and Stress Index ; SARS-CoV-2 ; endotheliitis ; inflammation ; Medicine ; R
    Subject code 610
    Language English
    Publishing date 2022-06-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article: The chest radiographic scoring system in initial diagnosis of COVID-19: Is a radiologist needed?

    Rorat, Marta / Jurek, Tomasz / Simon, Krzysztof / Guziński, Maciej

    Advances in clinical and experimental medicine : official organ Wroclaw Medical University

    2021  Volume 30, Issue 8, Page(s) 797–803

    Abstract: Background: Lung imaging, next to a polymerase chain reaction (PCR) test, is a key diagnostic tool in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection. The degree of abnormalities correlates with clinical outcome. Imaging of the ... ...

    Abstract Background: Lung imaging, next to a polymerase chain reaction (PCR) test, is a key diagnostic tool in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection. The degree of abnormalities correlates with clinical outcome. Imaging of the lungs using chest radiography (CXR) at the peak of a pandemic is considered a basic diagnostic tool at the triage stage. The CXR images are less characteristic than computed tomography (CT) and should be interpreted with a combination of clinical findings.
    Objectives: Comparison of the usefulness of 2 CXR severity scores to evaluate the presence/severity of inflammation in the course of COVID-19 and the possibility of a non-radiologist to interpret the image independently.
    Material and methods: Retrospective analysis of the medical records of 152 consecutive patients (aged 19-96, 73 men), infected with SARS-CoV-2, confirmed using real-time PCR (RT-PCR). Five-point and twelve-point CXR severity scoring systems were used (independently by a radiologist and a referring physician) to assess the severity of inflammation.
    Results: In 77 of 152 cases, the CXR revealed features of inflammation. Bilateral abnormalities were found in 48/77 (62.3%) cases. Statistically, the lower lobes were involved more often than the upper ones (p < 0.001) and the left lobe more often than the right one (p < 0.001). The intensity of the abnormalities using both scales correlated with the persistence of symptoms (p = 0.0133 and p = 0.0403). A positive and statistically significant correlation was found between both scales and dyspnea, decreased oxygen saturation, elevated C-reactive protein (CRP), ferritin, D-dimer, lactate dehydrogenase, and alanine aminotransferase activity. The interobserver agreement analysis did not show a statistically significant difference in the CXR severity score using the five-point (B = 0.8345, kappa = 0.82; p = 0.1480) or the twelve-point scale (B = 0.8219, kappa = 0.77; p = 0.0502).
    Conclusions: The CXR severity score is a useful tool to assess the inflammation in the initial diagnosis of coronavirus disease 2019 (COVID-19). Quantifying lung abnormalities accurately may be performed by a referring physician. Both CXR severity scales correlate well with clinical parameters.
    MeSH term(s) COVID-19 ; Humans ; Lung ; Male ; Radiography ; Radiography, Thoracic ; Radiologists ; Retrospective Studies ; SARS-CoV-2
    Language English
    Publishing date 2021-07-09
    Publishing country Poland
    Document type Journal Article
    ZDB-ID 2270257-X
    ISSN 1899-5276 ; 1230-025X
    ISSN 1899-5276 ; 1230-025X
    DOI 10.17219/acem/139717
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Value of quantitative analysis in lung computed tomography in patients severely ill with COVID-19.

    Rorat, Marta / Jurek, Tomasz / Simon, Krzysztof / Guziński, Maciej

    PloS one

    2021  Volume 16, Issue 5, Page(s) e0251946

    Abstract: Introduction: Quantitative computed tomography (QCT) is used to objectively assess the degree of parenchymal impairment in COVID-19 pneumonia.: Materials and methods: Retrospective study on 61 COVID-19 patients (severe and non-severe; 33 men, age 63+/ ...

    Abstract Introduction: Quantitative computed tomography (QCT) is used to objectively assess the degree of parenchymal impairment in COVID-19 pneumonia.
    Materials and methods: Retrospective study on 61 COVID-19 patients (severe and non-severe; 33 men, age 63+/-15 years) who underwent a CT scan due to tachypnea, dyspnoea or desaturation. QCT was performed using VCAR software. Patients' clinical data was collected, including laboratory results and oxygenation support. The optimal cut-off point for CT parameters for predicting death and respiratory support was performed by maximizing the Youden Index in a receiver operating characteristic (ROC) curve analysis.
    Results: The analysis revealed significantly greater progression of changes: ground-glass opacities (GGO) (31,42% v 13,89%, p<0.001), consolidation (11,85% v 3,32%, p<0.001) in patients with severe disease compared to non-severe disease. Five lobes were involved in all patients with severe disease. In non-severe patients, a positive correlation was found between severity of GGO, consolidation and emphysema and sex, tachypnea, chest x-ray (CXR) score on admission and laboratory parameters: CRP, D-dimer, ALT, lymphocyte count and lymphocyte/neutrophil ratio. In the group of severe patients, a correlation was found between sex, creatinine level and death. ROC analysis on death prediction was used to establish the cut-off point for GGO at 24.3% (AUC 0.8878, 95% CI 0.7889-0.9866; sensitivity 91.7%, specificity 75.5%), 5.6% for consolidation (AUC 0.7466, 95% CI 0.6009-0.8923; sensitivity 83.3%, specificity 59.2%), and 37.8% for total (GGO+consolidation) (AUC 0.8622, 95% CI 0.7525-0.972; sensitivity 75%, specificity 83.7%). The cut-off point for predicting respiratory support was established for GGO at 18.7% (AUC 0.7611, 95% CI 0.6268-0.8954; sensitivity 87.5%, specificity 64.4%), consolidation at 3.88% (AUC 0.7438, 95% CI 0.6146-0.8729; sensitivity 100%, specificity 46.7%), and total at 23.5% (AUC 0.7931, 95% CI 0.673-0.9131; sensitivity 93.8%, specificity 57.8%).
    Conclusion: QCT is a good diagnostic tool which facilitates decision-making regarding intensification of oxygen support and transfer to an intensive care unit in patients severely ill with COVID-19 pneumonia. QCT can make an independent and simple screening tool to assess the risk of death, regardless of clinical symptoms. Usefulness of QCT to predict the risk of death is higher than to assess the indications for respiratory support.
    MeSH term(s) Aged ; COVID-19/diagnostic imaging ; Disease Progression ; Female ; Humans ; Lung/diagnostic imaging ; Male ; Middle Aged ; Prognosis ; Retrospective Studies ; Severity of Illness Index ; Tomography, X-Ray Computed
    Language English
    Publishing date 2021-05-20
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ISSN 1932-6203
    ISSN (online) 1932-6203
    DOI 10.1371/journal.pone.0251946
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: Fetus exposure to HIV infection by mother during pregnancy – legal aspects

    Marta Rorat / Tomasz Jurek

    HIV & AIDS Review. International Journal of HIV-Related Problems, Vol 19, Iss 3, Pp 147-

    2020  Volume 152

    Abstract: From the medical and legal points of view, mother to child way of pathogens’ transmission is specific. In case of human immunodeficiency virus (HIV), the highest risk of infection occurs during labor; hence, implementation of pharmacological prophylaxis ... ...

    Abstract From the medical and legal points of view, mother to child way of pathogens’ transmission is specific. In case of human immunodeficiency virus (HIV), the highest risk of infection occurs during labor; hence, implementation of pharmacological prophylaxis for the mother and child is of high importance. Criminal law protection of a pregnant woman is of special nature, as it concerns two dependent entities, yet unequal before the law: the mother and the child. Legislators clearly give priority to the mother's life and health over the life and health of nasciturus. The beginning of labor or the moment when objective indications for early delivery occur, are considered to be the beginning of legal protection of life and health of a child, provided that the fetus has reached fetal viability. Only then, it is entitled to full legal protection. A HIV-infected woman who refuses therapy and, therefore, puts her child at risk of becoming infected, may be liable to prosecution. Liability under Article 161 § 1 of the Penal Code arises only when the child acquires the rights of a born person (human rights). Should the infection be transmitted in the perinatal period or after the birth, a mother may be held liable for moderate or even serious damage to the child's health. A physician is required by law to provide his patient with detailed information regarding the ways of HIV transmission, the options to protect the child against infection, and the risks associated with refusal to undergo therapy.
    Keywords aids ; liability ; crime ; maternity ; Medicine ; R
    Subject code 340
    Language English
    Publishing date 2020-10-01T00:00:00Z
    Publisher Termedia Publishing House
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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