LIVIVO - The Search Portal for Life Sciences

zur deutschen Oberfläche wechseln
Advanced search

Search results

Result 1 - 2 of total 2

Search options

  1. Article ; Online: Validation of the COVID-19 Indoor Test™ by Phylagen for Detection of SARS-CoV-2 Virus on Stainless-Steel Surfaces: AOAC Performance Tested MethodSM 122004.

    Fantin, Nick / Taft, Brad / Ugalde, Juan / Spring, Katie / Lam, Hannah / Tran, Alex / Green, Jessica

    Journal of AOAC International

    2021  Volume 104, Issue 4, Page(s) 948–958

    Abstract: Background: The COVID-19 Indoor Test™ by Phylagen uses a real-time PCR Assay to detect nucleic acid from SARS-CoV-2, the causative agent of COVID-19, which is extracted from swabs sampled from environmental surfaces. This information can be used to ... ...

    Abstract Background: The COVID-19 Indoor Test™ by Phylagen uses a real-time PCR Assay to detect nucleic acid from SARS-CoV-2, the causative agent of COVID-19, which is extracted from swabs sampled from environmental surfaces. This information can be used to detect the presence of the virus in indoor environments.
    Objective: To validate the COVID-19 Indoor TestTM by Phylagen as part of the AOAC Research Institute's Emergency Response Validation Performance Tested Method(s)SM program.
    Method: The COVID-19 Indoor Test by Phylagen assay was evaluated for specificity using in silico analysis of 15 764 SARS-CoV-2 sequences and 65 exclusivity organisms. The candidate method was also evaluated in an unpaired matrix study design for one environmental surface (stainless steel) and compared to the U.S. Centers for Disease Control and Prevention 2019-Novel Coronavirus (2019-nCoV) Real-Time RT-PCR Diagnostic Panel (Revision 4, Effective 6/12/2020).
    Results: Results of the in silico analysis demonstrated the specificity of the method in being able to detect SARS-CoV-2 target sequences and discriminate them from near-neighbors. In the matrix study, the candidate method demonstrated statistically significant better recovery of the target analyte than the reference method (2 × 103 GU/2 × 2" test surface).
    Conclusions: The COVID-19 Indoor Test by Phylagen is a rapid and accurate method that can be utilized to monitor the presence of SARS-CoV-2, the causative agent of COVID-19, on stainless-steel surfaces in built environments.
    Highlights: The COVID-19 Indoor Test by Phylagen assay performed significantly better than the reference method when used to detect SARS-CoV-2 from environmental surfaces.
    MeSH term(s) COVID-19 ; COVID-19 Nucleic Acid Testing ; Humans ; Real-Time Polymerase Chain Reaction ; SARS-CoV-2 ; Sensitivity and Specificity ; Stainless Steel
    Chemical Substances Stainless Steel (12597-68-1)
    Language English
    Publishing date 2021-04-02
    Publishing country England
    Document type Journal Article
    ZDB-ID 1103149-9
    ISSN 1944-7922 ; 1060-3271
    ISSN (online) 1944-7922
    ISSN 1060-3271
    DOI 10.1093/jaoacint/qsab051
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

  2. Article ; Online: Whole-genome sequencing in a patient with Charcot-Marie-Tooth neuropathy.

    Lupski, James R / Reid, Jeffrey G / Gonzaga-Jauregui, Claudia / Rio Deiros, David / Chen, David C Y / Nazareth, Lynne / Bainbridge, Matthew / Dinh, Huyen / Jing, Chyn / Wheeler, David A / McGuire, Amy L / Zhang, Feng / Stankiewicz, Pawel / Halperin, John J / Yang, Chengyong / Gehman, Curtis / Guo, Danwei / Irikat, Rola K / Tom, Warren /
    Fantin, Nick J / Muzny, Donna M / Gibbs, Richard A

    The New England journal of medicine

    2010  Volume 362, Issue 13, Page(s) 1181–1191

    Abstract: Background: Whole-genome sequencing may revolutionize medical diagnostics through rapid identification of alleles that cause disease. However, even in cases with simple patterns of inheritance and unambiguous diagnoses, the relationship between disease ... ...

    Abstract Background: Whole-genome sequencing may revolutionize medical diagnostics through rapid identification of alleles that cause disease. However, even in cases with simple patterns of inheritance and unambiguous diagnoses, the relationship between disease phenotypes and their corresponding genetic changes can be complicated. Comprehensive diagnostic assays must therefore identify all possible DNA changes in each haplotype and determine which are responsible for the underlying disorder. The high number of rare, heterogeneous mutations present in all humans and the paucity of known functional variants in more than 90% of annotated genes make this challenge particularly difficult. Thus, the identification of the molecular basis of a genetic disease by means of whole-genome sequencing has remained elusive. We therefore aimed to assess the usefulness of human whole-genome sequencing for genetic diagnosis in a patient with Charcot-Marie-Tooth disease.
    Methods: We identified a family with a recessive form of Charcot-Marie-Tooth disease for which the genetic basis had not been identified. We sequenced the whole genome of the proband, identified all potential functional variants in genes likely to be related to the disease, and genotyped these variants in the affected family members.
    Results: We identified and validated compound, heterozygous, causative alleles in SH3TC2 (the SH3 domain and tetratricopeptide repeats 2 gene), involving two mutations, in the proband and in family members affected by Charcot-Marie-Tooth disease. Separate subclinical phenotypes segregated independently with each of the two mutations; heterozygous mutations confer susceptibility to neuropathy, including the carpal tunnel syndrome.
    Conclusions: As shown in this study of a family with Charcot-Marie-Tooth disease, whole-genome sequencing can identify clinically relevant variants and provide diagnostic information to inform the care of patients.
    MeSH term(s) Adult ; Aged ; Aged, 80 and over ; Charcot-Marie-Tooth Disease/genetics ; Codon, Nonsense ; Female ; Genes, Recessive ; Genetic Association Studies ; Genome, Human ; Genotype ; Humans ; Male ; Middle Aged ; Mutation, Missense ; Pedigree ; Phenotype ; Polymorphism, Single Nucleotide ; Sequence Analysis, DNA
    Chemical Substances Codon, Nonsense
    Language English
    Publishing date 2010-04-01
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ZDB-ID 207154-x
    ISSN 1533-4406 ; 0028-4793
    ISSN (online) 1533-4406
    ISSN 0028-4793
    DOI 10.1056/NEJMoa0908094
    Database MEDical Literature Analysis and Retrieval System OnLINE

    More links

    Kategorien

To top