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  1. Article ; Online: Immunotherapy for gynecologic cancers.

    Liao, John B

    Gynecologic oncology

    2016  Volume 142, Issue 1, Page(s) 3–5

    Language English
    Publishing date 2016
    Publishing country United States
    Document type Editorial ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 801461-9
    ISSN 1095-6859 ; 0090-8258
    ISSN (online) 1095-6859
    ISSN 0090-8258
    DOI 10.1016/j.ygyno.2016.05.029
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Improving the Oxygen Evolution Reaction: Exsolved Cobalt Nanoparticles on Titanate Perovskite Catalyst.

    Zuo, Shangshang / Liao, Yuan / Wang, Chenchen / Naden, Aaron B / Irvine, John T S

    Small (Weinheim an der Bergstrasse, Germany)

    2023  Volume 20, Issue 11, Page(s) e2308867

    Abstract: Perovskites are an important class of oxygen evolution reaction (OER) catalysts due to highly tunable compositions and adaptable characteristics. However, perovskite-based catalysts can have limited atom utilization efficiency due to large particle size, ...

    Abstract Perovskites are an important class of oxygen evolution reaction (OER) catalysts due to highly tunable compositions and adaptable characteristics. However, perovskite-based catalysts can have limited atom utilization efficiency due to large particle size, resulting in low mass activity. Herein, Cobalt nanoparticles are exsolved from La
    Language English
    Publishing date 2023-10-29
    Publishing country Germany
    Document type Journal Article
    ZDB-ID 2168935-0
    ISSN 1613-6829 ; 1613-6810
    ISSN (online) 1613-6829
    ISSN 1613-6810
    DOI 10.1002/smll.202308867
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: behaviorMate: An

    Bowler, John C / Zakka, George / Yong, Hyun Choong / Li, Wenke / Rao, Bovey / Liao, Zhenrui / Priestley, James B / Losonczy, Attila

    bioRxiv : the preprint server for biology

    2024  

    Abstract: Investigators conducting behavioral experiments often need precise control over the timing of the delivery of stimuli to subjects and to collect the precise times of the subsequent behavioral responses. Furthermore, investigators want fine-tuned control ... ...

    Abstract Investigators conducting behavioral experiments often need precise control over the timing of the delivery of stimuli to subjects and to collect the precise times of the subsequent behavioral responses. Furthermore, investigators want fine-tuned control over how various multi-modal cues are presented. behaviorMate takes an "Intranet of Things" approach, using a networked system of hardware and software components for achieving these goals. The system outputs a file with integrated timestamp-event pairs that investigators can then format and process using their own analysis pipelines. We present an overview of the electronic components and GUI application that make up behaviorMate as well as mechanical designs for compatible experimental rigs to provide the reader with the ability to set up their own system. A wide variety of paradigms are supported, including goal-oriented learning, random foraging, and context switching. We demonstrate behaviorMate's utility and reliability with a range of use cases from several published studies and benchmark tests. Finally, we present experimental validation demonstrating different modalities of hippocampal place field studies. Both treadmill with burlap belt and virtual reality with running wheel paradigms were performed to confirm the efficacy and flexibility of the approach. Previous solutions rely on proprietary systems that may have large upfront costs or present frameworks that require customized software to be developed. behaviorMate uses open-source software and a flexible configuration system to mitigate both concerns. behaviorMate has a proven record for head-fixed imaging experiments and could be easily adopted for task control in a variety of experimental situations.
    Language English
    Publishing date 2024-04-05
    Publishing country United States
    Document type Preprint
    DOI 10.1101/2023.12.04.569989
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Global metabolomics revealed deviations from the metabolic aging clock in colorectal cancer patients.

    Zhang, Long / Mo, Shaobo / Zhu, Xiurui / Chou, C James / Jin, Bo / Han, Zhi / Schilling, James / Liao, Weili / Thyparambil, Sheeno / Luo, Ruben Y / Whitin, John C / Tian, Lu / Nagpal, Seema / Ceresnak, Scott R / Cohen, Harvey J / McElhinney, Doff B / Sylvester, Karl G / Gong, Yangming / Fu, Chen /
    Ling, Xuefeng B / Peng, Junjie

    Theranostics

    2024  Volume 14, Issue 4, Page(s) 1602–1614

    Abstract: Background: ...

    Abstract Background:
    MeSH term(s) Humans ; Metabolomics ; Aging ; Healthy Volunteers ; Precancerous Conditions ; Colorectal Neoplasms
    Language English
    Publishing date 2024-02-04
    Publishing country Australia
    Document type Journal Article
    ZDB-ID 2592097-2
    ISSN 1838-7640 ; 1838-7640
    ISSN (online) 1838-7640
    ISSN 1838-7640
    DOI 10.7150/thno.87303
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  5. Article ; Online ; Conference proceedings: Novel Therapeutics for Ovarian Cancer: The 11th Biennial Rivkin Center Ovarian Cancer Research Symposium.

    Johnson, Neil / Liao, John B

    International journal of gynecological cancer : official journal of the International Gynecological Cancer Society

    2017  Volume 27, Issue 9S Suppl 5, Page(s) S14–S19

    Abstract: Objective: The aim of this study was to summarize developments in novel therapeutics for ovarian cancer presented at the Ovarian Cancer Research Symposium held at the University of Washington.: Methods: A symposium of the leaders in ovarian cancer ... ...

    Abstract Objective: The aim of this study was to summarize developments in novel therapeutics for ovarian cancer presented at the Ovarian Cancer Research Symposium held at the University of Washington.
    Methods: A symposium of the leaders in ovarian cancer research was convened to present and discuss current advances and future directions in ovarian cancer research.
    Results: The fourth session was held on September 13, 2016, and focused on Novel Therapeutics for Ovarian Cancer. The session featured a keynote presentation on Novel Immunotherapeutics for Ovarian Cancer from Nora Disis and an invited oral presentation from Scott Kaufmann that discussed poly (ADP-ribose) polymerase (PARP) Inhibitor Combinations for the Treatment of Ovarian Cancer. Eight additional oral presentations were selected from abstract submissions. Thirty-eight abstracts were presented as posters highlighting recent advances in tumor immunology, PARP inhibition, chemoresistance, and novel targets for ovarian cancer therapy.
    Conclusions: PARP inhibitors, immunotherapies, and targeted therapies are but some of the expanding number of treatment options for ovarian cancer patients. Identification of the subsets of patients who will benefit most from these treatments remains the subject of intense preclinical and clinical research. Evidence presented at this symposium suggests that non-BRCA patients also benefit from PARP inhibitor therapies. Improved understanding of the mechanisms of chemoresistance and encouraging preclinical data presented for combinatorial approaches may soon yield new therapies for ovarian cancers that are resistant and refractory to standard treatments.
    MeSH term(s) Animals ; Female ; Humans ; Immunotherapy/methods ; Molecular Targeted Therapy ; Ovarian Neoplasms/drug therapy ; Ovarian Neoplasms/immunology ; Ovarian Neoplasms/therapy ; Poly(ADP-ribose) Polymerase Inhibitors/therapeutic use
    Chemical Substances Poly(ADP-ribose) Polymerase Inhibitors
    Language English
    Publishing date 2017-10-17
    Publishing country England
    Document type Congresses ; Research Support, U.S. Gov't, Non-P.H.S.
    ZDB-ID 1070385-8
    ISSN 1525-1438 ; 1048-891X
    ISSN (online) 1525-1438
    ISSN 1048-891X
    DOI 10.1097/IGC.0000000000001115
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Gynecologic cancers and solid organ transplantation.

    Liao, John B / Fisher, Cynthia E / Madeleine, Margaret M

    American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons

    2019  Volume 19, Issue 5, Page(s) 1266–1277

    Abstract: Solid organ transplant (SOT) recipients have an approximately 2-fold greater risk of developing and dying from a malignancy compared to the general population. Among the gynecologic cancers, including uterine, cervical, vaginal, vulvar, and ovarian, the ... ...

    Abstract Solid organ transplant (SOT) recipients have an approximately 2-fold greater risk of developing and dying from a malignancy compared to the general population. Among the gynecologic cancers, including uterine, cervical, vaginal, vulvar, and ovarian, the HPV-related cancers are known to increase among women posttransplant compared to women in the general population, but less is known about the risk of uterine and ovarian cancers. This review provides an overview of the epidemiology of gynecologic cancers after solid organ transplantation, as well as the pathophysiology, management, and specific risk factors associated with these cancers. Closer surveillance for cervical cancers is warranted and larger studies are needed to assess whether and how uterine and ovarian cancers are associated with excess incidence and mortality. Such studies may lead to improvements in screening, prevention, and treatment before and after transplantation.
    MeSH term(s) Female ; Genital Neoplasms, Female/complications ; Genital Neoplasms, Female/epidemiology ; Humans ; Immunosuppressive Agents/adverse effects ; Neoplasm Recurrence, Local ; Organ Transplantation/adverse effects ; Papillomavirus Infections/complications ; Papillomavirus Infections/epidemiology ; Risk ; Risk Factors ; Tissue Donors ; Treatment Outcome ; Uterus/transplantation
    Chemical Substances Immunosuppressive Agents
    Language English
    Publishing date 2019-04-04
    Publishing country United States
    Document type Journal Article ; Review
    ZDB-ID 2060594-8
    ISSN 1600-6143 ; 1600-6135
    ISSN (online) 1600-6143
    ISSN 1600-6135
    DOI 10.1111/ajt.15292
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  7. Article ; Online: Adherence to the 2020 American Cancer Society Guideline for Cancer Prevention and risk of breast cancer for women at increased familial and genetic risk in the Breast Cancer Family Registry: an evaluation of the weight, physical activity, and alcohol consumption recommendations.

    Geczik, Ashley M / Ferris, Jennifer S / Terry, Mary Beth / Andrulis, Irene L / Buys, Saundra S / Daly, Mary B / Hopper, John L / John, Esther M / Kurian, Allison W / Southey, Melissa C / Liao, Yuyan / Genkinger, Jeanine M

    Breast cancer research and treatment

    2022  Volume 194, Issue 3, Page(s) 673–682

    Abstract: Purpose: The American Cancer Society (ACS) published an updated Guideline for Cancer Prevention (ACS Guideline) in 2020. Research suggests that adherence to the 2012 ACS Guideline might lower breast cancer risk, but there is limited evidence that this ... ...

    Abstract Purpose: The American Cancer Society (ACS) published an updated Guideline for Cancer Prevention (ACS Guideline) in 2020. Research suggests that adherence to the 2012 ACS Guideline might lower breast cancer risk, but there is limited evidence that this applies to women at increased familial and genetic risk of breast cancer.
    Methods: Using the Breast Cancer Family Registry (BCFR), a cohort enriched for increased familial and genetic risk of breast cancer, we examined adherence to three 2020 ACS Guideline recommendations (weight management (body mass index), physical activity, and alcohol consumption) with breast cancer risk in 9615 women. We used Cox proportional hazard regression modeling to calculate hazard ratios (HRs) and 95% confidence intervals (CI) overall and stratified by BRCA1 and BRCA2 pathogenic variant status, family history of breast cancer, menopausal status, and estrogen receptor-positive (ER +) breast cancer.
    Results: We observed 618 incident invasive or in situ breast cancers over a median 12.9 years. Compared with being adherent to none (n = 55 cancers), being adherent to any ACS recommendation (n = 563 cancers) was associated with a 27% lower breast cancer risk (HR = 0.73, 95% CI: 0.55-0.97). This was evident for women with a first-degree family history of breast cancer (HR = 0.68, 95% CI: 0.50-0.93), women without BRCA1 or BRCA2 pathogenic variants (HR = 0.71, 95% CI: 0.53-0.95), postmenopausal women (HR = 0.63, 95% CI: 0.44-0.89), and for risk of ER+ breast cancer (HR = 0.63, 95% CI: 0.40-0.98).
    Discussion: Adherence to the 2020 ACS Guideline recommendations for BMI, physical activity, and alcohol consumption could reduce breast cancer risk for postmenopausal women and women at increased familial risk.
    MeSH term(s) Alcohol Drinking/adverse effects ; Alcohol Drinking/epidemiology ; American Cancer Society ; Breast Neoplasms/etiology ; Breast Neoplasms/genetics ; Exercise ; Female ; Humans ; Registries ; Risk Factors ; United States/epidemiology
    Language English
    Publishing date 2022-07-02
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 604563-7
    ISSN 1573-7217 ; 0167-6806
    ISSN (online) 1573-7217
    ISSN 0167-6806
    DOI 10.1007/s10549-022-06656-7
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  8. Article ; Online: Survival outcomes and toxicity of adjuvant immunotherapy after definitive concurrent chemotherapy with proton beam radiation therapy for patients with inoperable locally advanced non-small cell lung carcinoma.

    Corrigan, Kelsey L / Xu, Ting / Sasaki, Yuki / Lin, Ruitao / Chen, Aileen B / Welsh, James W / Lin, Steven H / Chang, Joe Y / Ning, Matthew S / Gandhi, Saumil / O'Reilly, Michael S / Gay, Carl M / Altan, Mehmet / Lu, Charles / Cascone, Tina / Koutroumpakis, Efstratios / Sheshadri, Ajay / Zhang, Xiaodong / Liao, Li /
    Zhu, X Ronald / Heymach, John V / Nguyen, Quynh-Nhu / Liao, Zhongxing

    Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology

    2024  Volume 193, Page(s) 110121

    Abstract: Introduction: Adjuvant immunotherapy (IO) following concurrent chemotherapy and photon radiation therapy confers an overall survival (OS) benefit for patients with inoperable locally advanced non-small cell lung carcinoma (LA-NSCLC); however, outcomes ... ...

    Abstract Introduction: Adjuvant immunotherapy (IO) following concurrent chemotherapy and photon radiation therapy confers an overall survival (OS) benefit for patients with inoperable locally advanced non-small cell lung carcinoma (LA-NSCLC); however, outcomes of adjuvant IO after concurrent chemotherapy with proton beam therapy (CPBT) are unknown. We investigated OS and toxicity after CPBT with adjuvant IO versus CPBT alone for inoperable LA-NSCLC.
    Materials and methods: We analyzed 354 patients with LA-NSCLC who were prospectively treated with CPBT with or without adjuvant IO from 2009 to 2021. Optimal variable ratio propensity score matching (PSM) matched CPBT with CPBT + IO patients. Survival was estimated with the Kaplan-Meier method and compared with log-rank tests. Multivariable Cox proportional hazards regression evaluated the effect of IO on disease outcomes.
    Results: Median age was 70 years; 71 (20%) received CPBT + IO and 283 (80%) received CPBT only. After PSM, 71 CPBT patients were matched with 71 CPBT + IO patients. Three-year survival rates for CPBT + IO vs CPBT were: OS 67% vs 30% (P < 0.001) and PFS 59% vs 35% (P = 0.017). Three-year LRFS (P = 0.137) and DMFS (P = 0.086) did not differ. Receipt of adjuvant IO was a strong predictor of OS (HR 0.40, P = 0.001) and PFS (HR 0.56, P = 0.030), but not LRFS (HR 0.61, P = 0.121) or DMFS (HR 0.61, P = 0.136). There was an increased incidence of grade ≥3 esophagitis in the CPBT-only group (6% CPBT + IO vs 17% CPBT, P = 0.037).
    Conclusion: This study, one of the first to investigate CPBT followed by IO for inoperable LA-NSCLC, showed that IO conferred survival benefits with no increased rates of toxicity.
    MeSH term(s) Humans ; Aged ; Carcinoma, Non-Small-Cell Lung/pathology ; Proton Therapy/adverse effects ; Chemotherapy, Adjuvant ; Lung Neoplasms/pathology ; Immunotherapy/adverse effects ; Retrospective Studies
    Language English
    Publishing date 2024-02-03
    Publishing country Ireland
    Document type Journal Article
    ZDB-ID 605646-5
    ISSN 1879-0887 ; 0167-8140
    ISSN (online) 1879-0887
    ISSN 0167-8140
    DOI 10.1016/j.radonc.2024.110121
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  9. Article ; Online: Chemical Proteomics with Novel Fully Functionalized Fragments and Stringent Target Prioritization Identifies the Glutathione-Dependent Isomerase GSTZ1 as a Lung Cancer Target.

    Liao, Yi / Chin Chan, Sean / Welsh, Eric A / Fang, Bin / Sun, Luxin / Schönbrunn, Ernst / Koomen, John M / Duckett, Derek R / Haura, Eric B / Monastyrskyi, Andrii / Rix, Uwe

    ACS chemical biology

    2023  Volume 18, Issue 2, Page(s) 251–264

    Abstract: Photoreactive fragment-like probes have been applied to discover target proteins that constitute novel cellular vulnerabilities and to identify viable chemical hits for drug discovery. Through forming covalent bonds, functionalized probes can achieve ... ...

    Abstract Photoreactive fragment-like probes have been applied to discover target proteins that constitute novel cellular vulnerabilities and to identify viable chemical hits for drug discovery. Through forming covalent bonds, functionalized probes can achieve stronger target engagement and require less effort for on-target mechanism validation. However, the design of probe libraries, which directly affects the biological target space that is interrogated, and effective target prioritization remain critical challenges of such a chemical proteomic platform. In this study, we designed and synthesized a diverse panel of 20 fragment-based probes containing natural product-based privileged structural motifs for small-molecule lead discovery. These probes were fully functionalized with orthogonal diazirine and alkyne moieties and used for protein crosslinking in live lung cancer cells, target enrichment
    MeSH term(s) Humans ; Proteomics ; Carcinoma, Non-Small-Cell Lung ; Lung Neoplasms/drug therapy ; Proteins ; Glutathione ; Glutathione Transferase/metabolism
    Chemical Substances Proteins ; Glutathione (GAN16C9B8O) ; GSTZ1 protein, human (EC 2.5.1.-) ; Glutathione Transferase (EC 2.5.1.18)
    Language English
    Publishing date 2023-01-11
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural
    ISSN 1554-8937
    ISSN (online) 1554-8937
    DOI 10.1021/acschembio.2c00587
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  10. Article ; Online: Differential network analysis of ROS1 inhibitors reveals lorlatinib polypharmacology through co-targeting PYK2.

    Liao, Yi / Remsing Rix, Lily L / Li, Xueli / Fang, Bin / Izumi, Victoria / Welsh, Eric A / Monastyrskyi, Andrii / Haura, Eric B / Koomen, John M / Doebele, Robert C / Rix, Uwe

    Cell chemical biology

    2023  Volume 31, Issue 2, Page(s) 284–297.e10

    Abstract: Multiple tyrosine kinase inhibitors (TKIs) are often developed for the same indication. However, their relative overall efficacy is frequently incompletely understood and they may harbor unrecognized targets that cooperate with the intended target. We ... ...

    Abstract Multiple tyrosine kinase inhibitors (TKIs) are often developed for the same indication. However, their relative overall efficacy is frequently incompletely understood and they may harbor unrecognized targets that cooperate with the intended target. We compared several ROS1 TKIs for inhibition of ROS1-fusion-positive lung cancer cell viability, ROS1 autophosphorylation and kinase activity, which indicated disproportionately higher cellular potency of one TKI, lorlatinib. Quantitative chemical and phosphoproteomics across four ROS1 TKIs and differential network analysis revealed that lorlatinib uniquely impacted focal adhesion signaling. Functional validation using pharmacological probes, RNA interference, and CRISPR-Cas9 knockout uncovered a polypharmacology mechanism of lorlatinib by dual targeting ROS1 and PYK2, which form a multiprotein complex with SRC. Rational multi-targeting of this complex by combining lorlatinib with SRC inhibitors exhibited pronounced synergy. Taken together, we show that systems pharmacology-based differential network analysis can dissect mixed canonical/non-canonical polypharmacology mechanisms across multiple TKIs enabling the design of rational drug combinations.
    MeSH term(s) Humans ; Aminopyridines/pharmacology ; Anaplastic Lymphoma Kinase/genetics ; Carcinoma, Non-Small-Cell Lung/drug therapy ; Focal Adhesion Kinase 2/antagonists & inhibitors ; Lactams ; Lactams, Macrocyclic ; Lung Neoplasms/drug therapy ; Polypharmacology ; Protein Kinase Inhibitors/pharmacology ; Protein-Tyrosine Kinases/antagonists & inhibitors ; Proto-Oncogene Proteins ; Pyrazoles
    Chemical Substances Aminopyridines ; Anaplastic Lymphoma Kinase (EC 2.7.10.1) ; Focal Adhesion Kinase 2 (EC 2.7.10.2) ; Lactams ; Lactams, Macrocyclic ; lorlatinib (OSP71S83EU) ; Protein Kinase Inhibitors ; Protein-Tyrosine Kinases (EC 2.7.10.1) ; Proto-Oncogene Proteins ; Pyrazoles ; ROS1 protein, human (EC 2.7.10.1)
    Language English
    Publishing date 2023-10-16
    Publishing country United States
    Document type Journal Article
    ISSN 2451-9448
    ISSN (online) 2451-9448
    DOI 10.1016/j.chembiol.2023.09.011
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