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  1. Article ; Online: SU-E-J-178: Development of Image Planning System for Radiation Therapy.

    Thapa, B / Molloy, J

    Medical physics

    2012  Volume 39, Issue 6Part8, Page(s) 3693

    Abstract: Purpose: The constraints required for patient imaging dose received during image-guided radiotherapy differ from those applied in the diagnostic realm. Wide latitude in applied dose can be justified if it results in useful improvement in image quality. ... ...

    Abstract Purpose: The constraints required for patient imaging dose received during image-guided radiotherapy differ from those applied in the diagnostic realm. Wide latitude in applied dose can be justified if it results in useful improvement in image quality. Currently, image acquisition parameters are chosen via broad categorizations in patient anatomy and imaging goal. Herein, we describe the development and early benchmarking of a patient-specific image planning system that is capable of predetermining the optimal acquisition parameters for a given level of patient dose and imaging goal.
    Methods: An algorithm was written in Matlab that performed a divergent ray-trace through a 3D CT data set and impinges on a flat imaging receptor. Energy-specific attenuation through each voxel of the CT data set is calculated to derive a net transmitted intensity. The detector response as a function of beam quality and exposure was measured and integrated into the algorithm. It is primarily this feature that distinguishes this from a traditional digitally reconstructed radiograph. Verification data was collected using a flat panel imager mounted onto a linear accelerator gantry and a lung phantom with an embedded nodule. Loss of object detectability was evaluated by measuring the visible diameter of the phantom nodule.
    Results: There is qualitative agreement between simulated and measured images in terms of contrast and object detectability. The simulation algorithm predicts both under-exposure and saturation of the detector over a range of beam qualities (80 keV to 120keV) and exposure levels. Object detectability erodes predictably above 60 mAs for at 80keV and above 15mAs for 120 keV for both simulated and measured images. Quantitative accuracy is currently limited by lack of beam heterogeneity, which will be added in further work.
    Conclusions: The feasibility and qualitative accuracy of an image planning system has been established.
    Language English
    Publishing date 2012-06
    Publishing country United States
    Document type Journal Article
    ZDB-ID 188780-4
    ISSN 2473-4209 ; 0094-2405
    ISSN (online) 2473-4209
    ISSN 0094-2405
    DOI 10.1118/1.4735017
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Expert's comment concerning Grand Rounds case entitled "total spondylectomy for solitary bone plasmacytoma of the lumbar spine in a young woman. A case report and review of the literature" (by N. von der Hoeh, S.K. Tschoeke, J. Gulow, A. Voelker, U. Siebolts and C.-E. Heyde).

    Molloy, Sean / Kyriakou, Chara

    European spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society

    2013  Volume 23, Issue 1, Page(s) 40–42

    MeSH term(s) Bone Neoplasms/pathology ; Bone Neoplasms/surgery ; Female ; Humans ; Lumbar Vertebrae/surgery ; Plasmacytoma/pathology ; Plasmacytoma/surgery ; Spine/surgery
    Language English
    Publishing date 2013-09-14
    Publishing country Germany
    Document type Journal Article ; Comment
    ZDB-ID 1115375-1
    ISSN 1432-0932 ; 0940-6719
    ISSN (online) 1432-0932
    ISSN 0940-6719
    DOI 10.1007/s00586-013-2957-4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: What's next for clinical trials for Neonatal Encephalopathy?

    Molloy, E J

    Irish medical journal

    2023  Volume 116, Issue No.1, Page(s) 5

    MeSH term(s) Humans ; Infant, Newborn ; Brain Diseases ; Clinical Trials as Topic
    Language English
    Publishing date 2023-01-09
    Publishing country Ireland
    Document type Letter ; Comment
    ZDB-ID 193134-9
    ISSN 0332-3102 ; 0021-129X
    ISSN 0332-3102 ; 0021-129X
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Doing a PhD: ten golden rules.

    Molloy, E J / Bearer, C F

    Pediatric research

    2022  Volume 93, Issue 3, Page(s) 448–450

    Language English
    Publishing date 2022-03-21
    Publishing country United States
    Document type Editorial
    ZDB-ID 4411-8
    ISSN 1530-0447 ; 0031-3998
    ISSN (online) 1530-0447
    ISSN 0031-3998
    DOI 10.1038/s41390-022-01950-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: A complicated decision: Empiric antibiotics in children with complicated pneumonia.

    Molloy, Matthew J / Thomson, Joanna E

    Journal of hospital medicine

    2022  Volume 17, Issue 1, Page(s) 73–74

    MeSH term(s) Anti-Bacterial Agents/therapeutic use ; Child ; Community-Acquired Infections/drug therapy ; Humans ; Pneumonia/drug therapy
    Chemical Substances Anti-Bacterial Agents
    Language English
    Publishing date 2022-01-10
    Publishing country United States
    Document type Editorial ; Comment
    ZDB-ID 2233783-0
    ISSN 1553-5606 ; 1553-5592
    ISSN (online) 1553-5606
    ISSN 1553-5592
    DOI 10.1002/jhm.2738
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Paediatric and neonatal sepsis and inflammation.

    Molloy, E J / Bearer, C F

    Pediatric research

    2022  Volume 91, Issue 2, Page(s) 267–269

    Abstract: Sepsis has a huge impact on global mortality and has been declared as a priority by the World Health organisation the WHO. ...

    Abstract Sepsis has a huge impact on global mortality and has been declared as a priority by the World Health organisation the WHO.
    MeSH term(s) Biomarkers/blood ; Child ; Humans ; Infant, Newborn ; Inflammation/complications ; Neonatal Sepsis/blood ; Neonatal Sepsis/complications ; Neonatal Sepsis/therapy
    Chemical Substances Biomarkers
    Language English
    Publishing date 2022-01-19
    Publishing country United States
    Document type Editorial ; Research Support, Non-U.S. Gov't ; Review
    ZDB-ID 4411-8
    ISSN 1530-0447 ; 0031-3998
    ISSN (online) 1530-0447
    ISSN 0031-3998
    DOI 10.1038/s41390-021-01918-4
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Pediatric Research and COVID-19: the changed landscape.

    Molloy, E J / Bearer, C B

    Pediatric research

    2021  Volume 92, Issue 3, Page(s) 618–619

    MeSH term(s) COVID-19 ; Child ; Humans ; Research ; SARS-CoV-2
    Language English
    Publishing date 2021-12-09
    Publishing country United States
    Document type Editorial
    ZDB-ID 4411-8
    ISSN 1530-0447 ; 0031-3998
    ISSN (online) 1530-0447
    ISSN 0031-3998
    DOI 10.1038/s41390-021-01857-0
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Fast, parallel, and cache-friendly suffix array construction.

    Khan, Jamshed / Rubel, Tobias / Molloy, Erin / Dhulipala, Laxman / Patro, Rob

    Algorithms for molecular biology : AMB

    2024  Volume 19, Issue 1, Page(s) 16

    Abstract: Purpose: String indexes such as the suffix array (SA) and the closely related longest common prefix (LCP) array are fundamental objects in bioinformatics and have a wide variety of applications. Despite their importance in practice, few scalable ... ...

    Abstract Purpose: String indexes such as the suffix array (SA) and the closely related longest common prefix (LCP) array are fundamental objects in bioinformatics and have a wide variety of applications. Despite their importance in practice, few scalable parallel algorithms for constructing these are known, and the existing algorithms can be highly non-trivial to implement and parallelize.
    Methods: In this paper we present CAPS-SA, a simple and scalable parallel algorithm for constructing these string indexes inspired by samplesort and utilizing an LCP-informed mergesort. Due to its design, CAPS-SA has excellent memory-locality and thus incurs fewer cache misses and achieves strong performance on modern multicore systems with deep cache hierarchies.
    Results: We show that despite its simple design, CAPS-SA outperforms existing state-of-the-art parallel SA and LCP-array construction algorithms on modern hardware. Finally, motivated by applications in modern aligners where the query strings have bounded lengths, we introduce the notion of a bounded-context SA and show that CAPS-SA can easily be extended to exploit this structure to obtain further speedups. We make our code publicly available at https://github.com/jamshed/CaPS-SA .
    Language English
    Publishing date 2024-04-28
    Publishing country England
    Document type Journal Article
    ZDB-ID 2224970-9
    ISSN 1748-7188
    ISSN 1748-7188
    DOI 10.1186/s13015-024-00263-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Carbon dioxide as a drug in neonatology.

    Molloy, E J / Cummins, E P

    Pediatric research

    2020  Volume 89, Issue 5, Page(s) 1049–1050

    MeSH term(s) Brain Diseases/drug therapy ; Carbon Dioxide/blood ; Carbon Dioxide/therapeutic use ; Humans ; Infant, Newborn ; Infant, Newborn, Diseases/drug therapy ; Neonatology ; Pilot Projects
    Chemical Substances Carbon Dioxide (142M471B3J)
    Language English
    Publishing date 2020-07-20
    Publishing country United States
    Document type Letter
    ZDB-ID 4411-8
    ISSN 1530-0447 ; 0031-3998
    ISSN (online) 1530-0447
    ISSN 0031-3998
    DOI 10.1038/s41390-020-1051-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article ; Online: The Impact of Boron Hybridisation on Photocatalytic Processes.

    Marotta, Alessandro / Adams, Callum E / Molloy, John J

    Angewandte Chemie (International ed. in English)

    2022  Volume 61, Issue 38, Page(s) e202207067

    Abstract: Recently the fruitful merger of organoboron chemistry and photocatalysis has come to the forefront of organic synthesis, resulting in the development of new technologies to access complex (non)borylated frameworks. Central to the success of this ... ...

    Abstract Recently the fruitful merger of organoboron chemistry and photocatalysis has come to the forefront of organic synthesis, resulting in the development of new technologies to access complex (non)borylated frameworks. Central to the success of this combination is control of boron hybridisation. Contingent on the photoactivation mode, boron as its neutral planar form or tetrahedral boronate can be used to regulate reactivity. This Minireview highlights the current state of the art in photocatalytic processes utilising organoboron compounds, paying particular attention to the role of boron hybridisation for the target transformation.
    Language English
    Publishing date 2022-08-10
    Publishing country Germany
    Document type Journal Article ; Review
    ZDB-ID 2011836-3
    ISSN 1521-3773 ; 1433-7851
    ISSN (online) 1521-3773
    ISSN 1433-7851
    DOI 10.1002/anie.202207067
    Database MEDical Literature Analysis and Retrieval System OnLINE

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