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  1. Article ; Online: Differential response to neoadjuvant endocrine therapy for Black/African American and White women in NCDB.

    Jones, Veronica / Schroeder, Mary C / Roberson, Mya L / De Andrade, James / Lizarraga, Ingrid M

    Breast cancer research and treatment

    2023  Volume 203, Issue 1, Page(s) 125–134

    Abstract: Purpose: Compared to White women, there are higher mortality rates in Black/African American (BAA) women with hormone receptor-positive breast cancer (HR + BC) which may be partially due to differences in treatment resistance. We assessed factors ... ...

    Abstract Purpose: Compared to White women, there are higher mortality rates in Black/African American (BAA) women with hormone receptor-positive breast cancer (HR + BC) which may be partially due to differences in treatment resistance. We assessed factors associated with response to neoadjuvant endocrine therapy (NET).
    Methods: The National Cancer Database (NCDB) was queried for women with clinical stage I-III HR + BC diagnosed 2006-2017 and treated with NET. Univariate and multivariate analyses described associations between the sample, duration of NET, and subsequent treatment response, defined by changes between clinical and pathological staging.
    Results: The analytic sample included 9864 White and 1090 BAA women. Compared to White women, BAA women were younger, had more co-morbidities, were higher stage at presentation, and more likely to have > 24 weeks of NET. After excluding those with unknown pT/N/M, 3521 White and 365 BAA women were evaluated for NET response. On multivariate analyses, controlling for age, stage, histology, HR positivity, and duration of NET, BAA women were more likely to downstage to pT0/Tis (OR 3.0, CI 1.2-7.1) and upstage to Stage IV (OR 2.4, CI 1.002-5.6). None of the women downstaged to pT0/Tis presented with clinical stage III disease; only 2 of the women upstaged to Stage IV disease presented with clinical Stage I disease.
    Conclusion: Independent of NET duration and clinical stage at presentation, BAA women were more likely to experience both complete tumor response and progression to metastatic disease. These results suggest significant heterogeneity in tumor biology and warrant a more nuanced therapeutic approach to HR + BC.
    MeSH term(s) Humans ; Female ; Breast Neoplasms/drug therapy ; Breast Neoplasms/pathology ; Black or African American ; Neoplasm Staging ; Neoadjuvant Therapy/methods ; White
    Language English
    Publishing date 2023-09-23
    Publishing country Netherlands
    Document type Journal Article
    ZDB-ID 604563-7
    ISSN 1573-7217 ; 0167-6806
    ISSN (online) 1573-7217
    ISSN 0167-6806
    DOI 10.1007/s10549-023-07106-8
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Reproductive compatibility among sympatric and allopatric isofemale lines of

    Coelho, Aloisio / Vieira, Jaci Mendes / Rugman-Jones, Paul F / Querino, Ranyse Barbosa / Moral, Rafael de Andrade / Parra, José Roberto Postali / Stouthamer, Richard

    Bulletin of entomological research

    2023  Volume 113, Issue 4, Page(s) 508–515

    Abstract: The present study evaluated the reproductive compatibility ... ...

    Abstract The present study evaluated the reproductive compatibility of
    MeSH term(s) Animals ; Brazil ; Reproduction ; Wasps/genetics ; DNA, Mitochondrial ; Mitochondria
    Chemical Substances DNA, Mitochondrial
    Language English
    Publishing date 2023-06-06
    Publishing country England
    Document type Journal Article
    ZDB-ID 280516-9
    ISSN 1475-2670 ; 0007-4853
    ISSN (online) 1475-2670
    ISSN 0007-4853
    DOI 10.1017/S0007485323000172
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: Evaluating the Current State of Epilepsy Care in the Province of Ontario.

    Van Winssen, Christine / Andrade, Andrea V / Andrade, Danielle M / Burneo, Jorge G / de Ribaupierre, Sandrine / Donner, Elizabeth / Hassan, Ayman / Ibrahim, George / Jones, Kevin C / Lomax, Lysa Boissé / Muir, Katherine / Nouri, Maryam N / Porter, Nikki / Ramachandrannair, Rajesh / Raymond, Paul / Rutka, James / Shapiro, Michelle J / Steven, David A / Swain, Darryl /
    Valiante, Taufik / Whiting, Sharon / Whitney, Robyn / Yau, Ivanna / Fantaneanu, Tadeu A

    The Canadian journal of neurological sciences. Le journal canadien des sciences neurologiques

    2024  , Page(s) 1–3

    Abstract: There are numerous challenges pertaining to epilepsy care across Ontario, including Epilepsy Monitoring Unit (EMU) bed pressures, surgical access and community supports. We sampled the current clinical, community and operational state of Ontario epilepsy ...

    Abstract There are numerous challenges pertaining to epilepsy care across Ontario, including Epilepsy Monitoring Unit (EMU) bed pressures, surgical access and community supports. We sampled the current clinical, community and operational state of Ontario epilepsy centres and community epilepsy agencies post COVID-19 pandemic. A 44-item survey was distributed to all 11 district and regional adult and paediatric Ontario epilepsy centres. Qualitative responses were collected from community epilepsy agencies. Results revealed ongoing gaps in epilepsy care across Ontario, with EMU bed pressures and labour shortages being limiting factors. A clinical network advising the Ontario Ministry of Health will improve access to epilepsy care.
    Language English
    Publishing date 2024-03-01
    Publishing country England
    Document type Journal Article
    ZDB-ID 197622-9
    ISSN 0317-1671
    ISSN 0317-1671
    DOI 10.1017/cjn.2024.30
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Exploring the Spike-hACE 2 Residue-Residue Interaction in Human Coronaviruses SARS-CoV-2, SARS-CoV, and HCoV-NL63.

    Lima Neto, José X / Vieira, Davi S / de Andrade, Jones / Fulco, Umberto Laino

    Journal of chemical information and modeling

    2022  Volume 62, Issue 11, Page(s) 2857–2868

    Abstract: Coronaviruses (CoVs) have been responsible for three major outbreaks since the beginning of the 21st century, and the emergence of the recent COVID-19 pandemic has resulted in considerable efforts to design new therapies against coronaviruses. Thus, it ... ...

    Abstract Coronaviruses (CoVs) have been responsible for three major outbreaks since the beginning of the 21st century, and the emergence of the recent COVID-19 pandemic has resulted in considerable efforts to design new therapies against coronaviruses. Thus, it is crucial to understand the structural features of their major proteins related to the virus-host interaction. Several studies have shown that from the seven known CoV human pathogens, three of them use the human Angiotensin-Converting Enzyme 2 (hACE-2) to mediate their host's cell entry: SARS-CoV-2, SARS-CoV, and HCoV-NL63. Therefore, we employed quantum biochemistry techniques within the density function theory (DFT) framework and the molecular fragmentation with conjugate caps (MFCC) approach to analyze the interactions between the hACE-2 and the spike protein-RBD of the three CoVs in order to map the hot-spot residues that form the recognition surface for these complexes and define the similarities and differences in the interaction scenario. The total interaction energy evaluated showed a good agreement with the experimental binding affinity order: SARS-2 > SARS > NL63. A detailed investigation revealed the energetically most relevant regions of hACE-2 and the spike protein for each complex, as well as the key residue-residue interactions. Our results provide valuable information to deeply understand the structural behavior and binding site characteristics that could help to develop antiviral therapeutics that inhibit protein-protein interactions between CoVs S protein and hACE-2.
    MeSH term(s) COVID-19 ; Coronavirus NL63, Human/metabolism ; Humans ; Pandemics ; SARS-CoV-2 ; Spike Glycoprotein, Coronavirus/metabolism
    Chemical Substances Spike Glycoprotein, Coronavirus ; spike protein, SARS-CoV-2
    Language English
    Publishing date 2022-05-26
    Publishing country United States
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 190019-5
    ISSN 1549-960X ; 0095-2338
    ISSN (online) 1549-960X
    ISSN 0095-2338
    DOI 10.1021/acs.jcim.1c01544
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Correction to: Translation, cultural adaptation and reproducibility of a Portuguese version of the Functional Index for Hand OsteoArthritis (FIHOA).

    de Azevedo, Francisco Vileimar Andrade / Rocha, Hermano Alexandre Lima / Jones, Anamaria / Natour, Jamil / da Rocha, Francisco Airton Castro

    Advances in rheumatology (London, England)

    2021  Volume 61, Issue 1, Page(s) 37

    Language English
    Publishing date 2021-06-22
    Publishing country England
    Document type Published Erratum
    ISSN 2523-3106
    ISSN (online) 2523-3106
    DOI 10.1186/s42358-021-00196-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Why Does the Novel Coronavirus Spike Protein Interact so Strongly with the Human ACE2? A Thermodynamic Answer.

    de Andrade, Jones / Gonçalves, Paulo Fernando Bruno / Netz, Paulo Augusto

    Chembiochem : a European journal of chemical biology

    2020  Volume 22, Issue 5, Page(s) 865–875

    Abstract: The SARS-CoV-2 pandemic is the biggest health concern today, but until now there is no treatment. One possible drug target is the receptor binding domain (RBD) of the coronavirus' spike protein, which recognizes the human angiotensin-converting enzyme 2 ( ...

    Abstract The SARS-CoV-2 pandemic is the biggest health concern today, but until now there is no treatment. One possible drug target is the receptor binding domain (RBD) of the coronavirus' spike protein, which recognizes the human angiotensin-converting enzyme 2 (hACE2). Our in silico study discusses crucial structural and thermodynamic aspects of the interactions involving RBDs from the SARS-CoV and SARS-CoV-2 with the hACE2. Molecular docking and molecular dynamics simulations explain why the chemical affinity of the new SARS-CoV-2 for hACE2 is much higher than in the case of SARS-CoV, revealing an intricate pattern of hydrogen bonds and hydrophobic interactions and estimating a free energy of binding, which is consistently much more negative in the case of SARS-CoV-2. This work presents a chemical reason for the difficulty in treating the SARS-CoV-2 virus with drugs targeting its spike protein and helps to explain its infectiousness.
    MeSH term(s) Angiotensin-Converting Enzyme 2/chemistry ; Angiotensin-Converting Enzyme 2/metabolism ; Binding Sites ; COVID-19 ; Crystallography, X-Ray ; Humans ; Hydrogen Bonding ; Molecular Dynamics Simulation ; Protein Binding ; Protein Interaction Domains and Motifs ; SARS Virus/chemistry ; SARS Virus/metabolism ; SARS-CoV-2/chemistry ; SARS-CoV-2/metabolism ; Spike Glycoprotein, Coronavirus/chemistry ; Spike Glycoprotein, Coronavirus/metabolism
    Chemical Substances Spike Glycoprotein, Coronavirus ; spike protein, SARS-CoV-2 ; ACE2 protein, human (EC 3.4.17.23) ; Angiotensin-Converting Enzyme 2 (EC 3.4.17.23)
    Keywords covid19
    Language English
    Publishing date 2020-11-18
    Publishing country Germany
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2020469-3
    ISSN 1439-7633 ; 1439-4227
    ISSN (online) 1439-7633
    ISSN 1439-4227
    DOI 10.1002/cbic.202000455
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Book ; Online: How Does the Novel Coronavirus Interact with the Human ACE2 Enzyme? A Thermodynamic Answer

    Jones de Andrade / Paulo Fernando Bruno Gonçalves / Paulo Augusto Netz

    2020  

    Abstract: The SARS-CoV-2 coronavirus pandemic is certainly the most important public health concern today. Until now there are no vaccines or treatments available, despite intensive international efforts. One of the targets for new drugs is the Coronavirus Spike ... ...

    Abstract The SARS-CoV-2 coronavirus pandemic is certainly the most important public health concern today. Until now there are no vaccines or treatments available, despite intensive international efforts. One of the targets for new drugs is the Coronavirus Spike Protein, responsible for its binding and entry into the host cells. The Receptor Binding Domain (RBD) found at the Spike Protein recognizes the human angiotensin-converting enzyme 2 (hACE2). The present in silico study discuss structural and thermodynamic aspects of the protein complexes involving the RBD’s from the 2002 SARS-CoV and 2019 SARS-CoV-2 with the hACE2. Molecular docking and molecular dynamics simulations of the complexes and isolated proteins were performed, providing insights on their detailed pattern of interactions, and estimating the free energy of binding. The obtained results support previous studies indicating that the chemical affinity of the new SARS-CoV-2 for the hACE2 enzyme virus is much higher than the 2002 SARS-CoV. The herein calculated Gibbs free energy of binding to the hACE2 enzyme is, depending on the technique, from 5.11 kcal/mol to 8.39 kcal/mol more negative in the case of the new coronavirus’ RBD. In addition, within each employed technique, this free energy is consistently 61±2% stronger for SARS-CoV-2 than for SARS-CoV. This work presents a chemical reason for the difficulty in treating the SARS-CoV-2 virus using drugs targeting its Spike Protein, as well as helps to explain its infectivity, while defining a minimum free energy of binding for new drugs to be designed against this disease.
    Keywords Biochemistry ; Computational Chemistry and Modeling ; Biophysical Chemistry ; Statistical Mechanics ; Thermodynamics (Physical Chem.) ; COVID19 ; SARS-CoV-2 ; SARS-CoV-2 enzymes ; Simulation and modeling ; Molecular Dynamics Simulation Study ; Molecular docking results ; Molecular docking analysis ; covid19
    Subject code 612
    Publishing date 2020-05-26T08:17:22Z
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article: Second Primary Malignancy after Acute Promyelocytic Leukemia: A Population-Based Study.

    Lenzi, Luana / Lee-Jones, Lisa / Mostofa, Maruf A / de Andrade, Diancarlos P / Ribeiro, Raul C / Figueiredo, Bonald C

    Cancers

    2020  Volume 12, Issue 12

    Abstract: Acute promyelocytic leukemia (APL), is now highly curable with treatment approaches that include all-trans retinoic acid (ATRA). The high incidence of APL in the Hispanics suggests an association with genetic variants in this population. Information on ... ...

    Abstract Acute promyelocytic leukemia (APL), is now highly curable with treatment approaches that include all-trans retinoic acid (ATRA). The high incidence of APL in the Hispanics suggests an association with genetic variants in this population. Information on second primary malignancies (SPMs) in patients with APL is limited. The Surveillance, Epidemiology, and End Results (SEER) database was used to interrogate whether the rate of SPMs in patients with APL was associated with ethnicity and/or ATRA treatment. Between 2000 and 2016, 116 cases of SPM were diagnosed among 4019 patients with APL. The mean age at diagnosis of primary APL was 53.9 years (±15.7 years), and the mean age at diagnosis of SPMs was 59.0 years (±14.5 years). Comparisons with 3774 APL survivors who did not develop SPMs revealed that age ≥40 years at diagnosis of APL (
    Language English
    Publishing date 2020-12-03
    Publishing country Switzerland
    Document type Journal Article
    ZDB-ID 2527080-1
    ISSN 2072-6694
    ISSN 2072-6694
    DOI 10.3390/cancers12123610
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article: Why Does the Novel Coronavirus Spike Protein Interact so Strongly with the Human ACE2? A Thermodynamic Answer

    de Andrade, Jones / Gonçalves, Paulo Fernando Bruno / Netz, Paulo Augusto

    Chembiochem

    Abstract: The SARS-CoV-2 pandemic is the biggest health concern today, but until now there is no treatment. One possible drug target is the receptor binding domain (RBD) of the coronavirus' spike protein, which recognizes the human angiotensin-converting enzyme 2 ( ...

    Abstract The SARS-CoV-2 pandemic is the biggest health concern today, but until now there is no treatment. One possible drug target is the receptor binding domain (RBD) of the coronavirus' spike protein, which recognizes the human angiotensin-converting enzyme 2 (hACE2). Our in silico study discusses crucial structural and thermodynamic aspects of the interactions involving RBDs from the SARS-CoV and SARS-CoV-2 with the hACE2. Molecular docking and molecular dynamics simulations explain why the chemical affinity of the new SARS-CoV-2 for hACE2 is much higher than in the case of SARS-CoV, revealing an intricate pattern of hydrogen bonds and hydrophobic interactions and estimating a free energy of binding, which is consistently much more negative in the case of SARS-CoV-2. This work presents a chemical reason for the difficulty in treating the SARS-CoV-2 virus with drugs targeting its spike protein and helps to explain its infectiousness.
    Keywords covid19
    Publisher WHO
    Document type Article
    Note WHO #Covidence: #882331
    Database COVID19

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  10. Article ; Online: Urban heat mitigation by green and blue infrastructure: Drivers, effectiveness, and future needs.

    Kumar, Prashant / Debele, Sisay E / Khalili, Soheila / Halios, Christos H / Sahani, Jeetendra / Aghamohammadi, Nasrin / Andrade, Maria de Fatima / Athanassiadou, Maria / Bhui, Kamaldeep / Calvillo, Nerea / Cao, Shi-Jie / Coulon, Frederic / Edmondson, Jill L / Fletcher, David / Dias de Freitas, Edmilson / Guo, Hai / Hort, Matthew C / Katti, Madhusudan / Kjeldsen, Thomas Rodding /
    Lehmann, Steffen / Locosselli, Giuliano Maselli / Malham, Shelagh K / Morawska, Lidia / Parajuli, Rajan / Rogers, Christopher D F / Yao, Runming / Wang, Fang / Wenk, Jannis / Jones, Laurence

    Innovation (Cambridge (Mass.))

    2024  Volume 5, Issue 2, Page(s) 100588

    Abstract: The combination of urbanization and global warming leads to urban overheating and compounds the frequency and intensity of extreme heat events due to climate change. Yet, the risk of urban overheating can be mitigated by urban green-blue-grey ... ...

    Abstract The combination of urbanization and global warming leads to urban overheating and compounds the frequency and intensity of extreme heat events due to climate change. Yet, the risk of urban overheating can be mitigated by urban green-blue-grey infrastructure (GBGI), such as parks, wetlands, and engineered greening, which have the potential to effectively reduce summer air temperatures. Despite many reviews, the evidence bases on quantified GBGI cooling benefits remains partial and the practical recommendations for implementation are unclear. This systematic literature review synthesizes the evidence base for heat mitigation and related co-benefits, identifies knowledge gaps, and proposes recommendations for their implementation to maximize their benefits. After screening 27,486 papers, 202 were reviewed, based on 51 GBGI types categorized under 10 main divisions. Certain GBGI (green walls, parks, street trees) have been well researched for their urban cooling capabilities. However, several other GBGI have received negligible (zoological garden, golf course, estuary) or minimal (private garden, allotment) attention. The most efficient air cooling was observed in botanical gardens (5.0 ± 3.5°C), wetlands (4.9 ± 3.2°C), green walls (4.1 ± 4.2°C), street trees (3.8 ± 3.1°C), and vegetated balconies (3.8 ± 2.7°C). Under changing climate conditions (2070-2100) with consideration of RCP8.5, there is a shift in climate subtypes, either within the same climate zone (e.g., Dfa to Dfb and Cfb to Cfa) or across other climate zones (e.g., Dfb [continental warm-summer humid] to BSk [dry, cold semi-arid] and Cwa [temperate] to Am [tropical]). These shifts may result in lower efficiency for the current GBGI in the future. Given the importance of multiple services, it is crucial to balance their functionality, cooling performance, and other related co-benefits when planning for the future GBGI. This global GBGI heat mitigation inventory can assist policymakers and urban planners in prioritizing effective interventions to reduce the risk of urban overheating, filling research gaps, and promoting community resilience.
    Language English
    Publishing date 2024-02-07
    Publishing country United States
    Document type Journal Article ; Review
    ISSN 2666-6758
    ISSN (online) 2666-6758
    DOI 10.1016/j.xinn.2024.100588
    Database MEDical Literature Analysis and Retrieval System OnLINE

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