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  1. Article ; Online: The juxtamembrane region of MuSK has a critical role in agrin-mediated signaling.

    Herbst, R / Burden, S J

    The EMBO journal

    2022  Volume 19, Issue 5, Page(s) 1167

    Language English
    Publishing date 2022-11-29
    Publishing country England
    Document type Published Erratum
    ZDB-ID 586044-1
    ISSN 1460-2075 ; 0261-4189
    ISSN (online) 1460-2075
    ISSN 0261-4189
    DOI 10.1038/sj.emboj.7592228b
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Broad Spectrum Enantioselective Amide Bond Synthetase from

    Tang, Qingyun / Petchey, Mark / Rowlinson, Benjamin / Burden, Thomas J / Fairlamb, Ian J S / Grogan, Gideon

    ACS catalysis

    2024  Volume 14, Issue 2, Page(s) 1021–1029

    Abstract: The synthesis of amide bonds is one of the most frequently performed reactions in pharmaceutical synthesis, but the requirement for stoichiometric quantities of coupling agents and activated substrates in established methods has prompted interest in ... ...

    Abstract The synthesis of amide bonds is one of the most frequently performed reactions in pharmaceutical synthesis, but the requirement for stoichiometric quantities of coupling agents and activated substrates in established methods has prompted interest in biocatalytic alternatives. Amide Bond Synthetases (ABSs) actively catalyze both the ATP-dependent adenylation of carboxylic acid substrates and their subsequent amidation using an amine nucleophile, both within the active site of the enzyme, enabling the use of only a small excess of the amine partner. We have assessed the ability of an ABS from
    Language English
    Publishing date 2024-01-06
    Publishing country United States
    Document type Journal Article
    ISSN 2155-5435
    ISSN 2155-5435
    DOI 10.1021/acscatal.3c05656
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Temporal artery biopsy.

    Golenbiewski, Jon / Burden, Susan / Wolfe, Rachel M

    Best practice & research. Clinical rheumatology

    2023  Volume 37, Issue 1, Page(s) 101833

    Abstract: Giant cell arteritis is a common vasculitis in patients over the age of 50 years old. If not promptly recognized and aggressively treated with high-dose glucocorticoids, ischemia resulting in permanent vision loss or stroke can occur. Yet, the treatment ... ...

    Abstract Giant cell arteritis is a common vasculitis in patients over the age of 50 years old. If not promptly recognized and aggressively treated with high-dose glucocorticoids, ischemia resulting in permanent vision loss or stroke can occur. Yet, the treatment with high-dose glucocorticoids over a long period of time can be problematic in this particular patient population given their age and associated comorbidities. Temporal artery biopsies (TAB) are an important diagnostic tool to evaluate patients with suspected giant cell arteritis. Herein, we explore indications for TAB and practical points in obtaining a TAB based on available evidence. We review the surgical procedure itself and associated complications. Lastly, we examine common pathological findings and considerations of alternative diagnoses.
    MeSH term(s) Humans ; Middle Aged ; Giant Cell Arteritis/diagnosis ; Giant Cell Arteritis/drug therapy ; Temporal Arteries/pathology ; Glucocorticoids/therapeutic use ; Biopsy ; Retrospective Studies
    Chemical Substances Glucocorticoids
    Language English
    Publishing date 2023-05-30
    Publishing country Netherlands
    Document type Journal Article ; Review
    ZDB-ID 2052323-3
    ISSN 1532-1770 ; 1521-6942
    ISSN (online) 1532-1770
    ISSN 1521-6942
    DOI 10.1016/j.berh.2023.101833
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: A systematic review and meta-analysis of the effects of community use of oral nutritional supplements on clinical outcomes.

    Cawood, A L / Burden, S T / Smith, T / Stratton, R J

    Ageing research reviews

    2023  Volume 88, Page(s) 101953

    Abstract: The impact of oral nutritional supplements (ONS) on patients with complications (disease related morbidity) requires further exploration. This systematic review included 44 randomised controlled trials (RCT) (29 RCT surgical, 15 RCT medical patients) ... ...

    Abstract The impact of oral nutritional supplements (ONS) on patients with complications (disease related morbidity) requires further exploration. This systematic review included 44 randomised controlled trials (RCT) (29 RCT surgical, 15 RCT medical patients) examining the effect of ONS in community settings on the incidence of complications (n = 716, mean age 67 years, range 35-87). ONS (mean intake 588 kcal/day, range 125-1750; protein 22 g/day, range 0-54; mean energy from protein 22 %, range 0-54) were prescribed for a mean 74 days, range 5-365. Most RCT (77 %) reported fewer complications in the ONS group versus control. Meta-analysis (39 RCT) showed ONS consumption reduced complications including infections, pressure ulcers, wound and fracture healing (OR 0.68, 95 % CI 0.59,0.79; p<0.001). Results showed reductions when ONS were used in hospital and community settings (OR 0.72, 95 % CI 0.59,0.87; p = 0.001) or just in the community (OR 0.65, 95 % CI 0.52, 0.80; p<0.001). Reductions in complications were only seen with high ONS adherence ≥ 80 % (OR 0.63, 95 % CI 0.48,0.83; p = 0.001) and ready-to-drink ONS (OR 0.69, 95 % CI 0.60,0.81; p<0.001). This systematic review and meta-analysis show community-based use of ONS in addition to the diet substantially reduces the incidence of complications. The diversity of ONS, patient populations and complication outcomes within the trials included in this review mean further research is warranted.
    MeSH term(s) Humans ; Aged ; Aged, 80 and over ; Dietary Supplements ; Malnutrition
    Language English
    Publishing date 2023-05-12
    Publishing country England
    Document type Meta-Analysis ; Systematic Review ; Journal Article ; Review
    ZDB-ID 2075672-0
    ISSN 1872-9649 ; 1568-1637
    ISSN (online) 1872-9649
    ISSN 1568-1637
    DOI 10.1016/j.arr.2023.101953
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Why animals can outrun robots.

    Burden, Samuel A / Libby, Thomas / Jayaram, Kaushik / Sponberg, Simon / Donelan, J Maxwell

    Science robotics

    2024  Volume 9, Issue 89, Page(s) eadi9754

    Abstract: Animals are much better at running than robots. The difference in performance arises in the important dimensions of agility, range, and robustness. To understand the underlying causes for this performance gap, we compare natural and artificial ... ...

    Abstract Animals are much better at running than robots. The difference in performance arises in the important dimensions of agility, range, and robustness. To understand the underlying causes for this performance gap, we compare natural and artificial technologies in the five subsystems critical for running: power, frame, actuation, sensing, and control. With few exceptions, engineering technologies meet or exceed the performance of their biological counterparts. We conclude that biology's advantage over engineering arises from better integration of subsystems, and we identify four fundamental obstacles that roboticists must overcome. Toward this goal, we highlight promising research directions that have outsized potential to help future running robots achieve animal-level performance.
    MeSH term(s) Robotics/instrumentation ; Animals ; Equipment Design ; Running/physiology ; Biomechanical Phenomena ; Humans
    Language English
    Publishing date 2024-04-24
    Publishing country United States
    Document type Journal Article ; Research Support, U.S. Gov't, Non-P.H.S. ; Review ; Research Support, Non-U.S. Gov't
    ISSN 2470-9476
    ISSN (online) 2470-9476
    DOI 10.1126/scirobotics.adi9754
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Preoperative nutrition therapy in people undergoing gastrointestinal surgery.

    Sowerbutts, Anne Marie / Burden, Sorrel / Sremanakova, Jana / French, Chloe / Knight, Stephen R / Harrison, Ewen M

    The Cochrane database of systematic reviews

    2024  Volume 4, Page(s) CD008879

    Abstract: Background: Poor preoperative nutritional status has been consistently linked to an increase in postoperative complications and worse surgical outcomes. We updated a review first published in 2012.: Objectives: To assess the effects of preoperative ... ...

    Abstract Background: Poor preoperative nutritional status has been consistently linked to an increase in postoperative complications and worse surgical outcomes. We updated a review first published in 2012.
    Objectives: To assess the effects of preoperative nutritional therapy compared to usual care in people undergoing gastrointestinal surgery.
    Search methods: We searched the Cochrane Central Register of Controlled Trials, MEDLINE, Embase, three other databases and two trial registries on 28 March 2023. We searched reference lists of included studies.
    Selection criteria: We included randomised controlled trials (RCTs) of people undergoing gastrointestinal surgery and receiving preoperative nutritional therapy, including parenteral nutrition, enteral nutrition or oral nutrition supplements, compared to usual care. We only included nutritional therapy that contained macronutrients (protein, carbohydrate and fat) and micronutrients, and excluded studies that evaluated single nutrients. We included studies regardless of the nutritional status of participants, that is, well-nourished participants, participants at risk of malnutrition, or mixed populations. We excluded studies in people undergoing pancreatic and liver surgery. Our primary outcomes were non-infectious complications, infectious complications and length of hospital stay. Our secondary outcomes were nutritional aspects, quality of life, change in macronutrient intake, biochemical parameters, 30-day perioperative mortality and adverse effects.
    Data collection and analysis: We used standard Cochrane methodology. We assessed risk of bias using the RoB 1 tool and applied the GRADE criteria to assess the certainty of evidence.
    Main results: We included 16 RCTs reporting 19 comparisons (2164 participants). Seven studies were new for this update. Participants' ages ranged from 21 to 79 years, and 62% were men. Three RCTs used parenteral nutrition, two used enteral nutrition, eight used immune-enhancing nutrition and six used standard oral nutrition supplements. All studies included mixed groups of well-nourished and malnourished participants; they used different methods to identify malnutrition and reported this in different ways. Not all the included studies were conducted within an Enhanced Recovery After Surgery (ERAS) programme, which is now current clinical practice in most hospitals undertaking GI surgery. We were concerned about risk of bias in all the studies and 14 studies were at high risk of bias due to lack of blinding. We are uncertain if parenteral nutrition has any effect on the number of participants who had a non-infectious complication (risk ratio (RR) 0.61, 95% confidence interval (CI) 0.36 to 1.02; 3 RCTs, 260 participants; very low-certainty evidence); infectious complication (RR 0.98, 95% CI 0.53 to 1.80; 3 RCTs, 260 participants; very low-certainty evidence) or length of hospital stay (mean difference (MD) 5.49 days, 95% CI 0.02 to 10.96; 2 RCTs, 135 participants; very low-certainty evidence). None of the enteral nutrition studies reported non-infectious complications as an outcome. The evidence is very uncertain about the effect of enteral nutrition on the number of participants with infectious complications after surgery (RR 0.90, 95% CI 0.59 to 1.38; 2 RCTs, 126 participants; very low-certainty evidence) or length of hospital stay (MD 5.10 days, 95% CI -1.03 to 11.23; 2 RCTs, 126 participants; very low-certainty evidence). Immune-enhancing nutrition compared to controls may result in little to no effect on the number of participants experiencing a non-infectious complication (RR 0.79, 95% CI 0.62 to 1.00; 8 RCTs, 1020 participants; low-certainty evidence), infectious complications (RR 0.74, 95% CI 0.53 to 1.04; 7 RCTs, 925 participants; low-certainty evidence) or length of hospital stay (MD -1.22 days, 95% CI -2.80 to 0.35; 6 RCTs, 688 participants; low-certainty evidence). Standard oral nutrition supplements may result in little to no effect on number of participants with a non-infectious complication (RR 0.90, 95% CI 0.67 to 1.20; 5 RCTs, 473 participants; low-certainty evidence) or the length of hospital stay (MD -0.65 days, 95% CI -2.33 to 1.03; 3 RCTs, 299 participants; low-certainty evidence). The evidence is very uncertain about the effect of oral nutrition supplements on the number of participants with an infectious complication (RR 0.88, 95% CI 0.60 to 1.27; 5 RCTs, 473 participants; very low-certainty evidence). Sensitivity analysis based on malnourished and weight-losing participants found oral nutrition supplements may result in a slight reduction in infections (RR 0.58, 95% CI 0.40 to 0.85; 2 RCTs, 184 participants). Studies reported some secondary outcomes, but not consistently. Complications associated with central venous catheters occurred in RCTs involving parenteral nutrition. Adverse events in the enteral nutrition, immune-enhancing nutrition and standard oral nutrition supplements RCTs included nausea, vomiting, diarrhoea and abdominal pain.
    Authors' conclusions: We were unable to determine if parenteral nutrition, enteral nutrition, immune-enhancing nutrition or standard oral nutrition supplements have any effect on the clinical outcomes due to very low-certainty evidence. There is some evidence that standard oral nutrition supplements may have no effect on complications. Sensitivity analysis showed standard oral nutrition supplements probably reduced infections in weight-losing or malnourished participants. Further high-quality multicentre research considering the ERAS programme is required and further research in low- and middle-income countries is needed.
    MeSH term(s) Male ; Humans ; Young Adult ; Adult ; Middle Aged ; Aged ; Female ; Nutritional Status ; Nutritional Support ; Enteral Nutrition/adverse effects ; Enteral Nutrition/methods ; Digestive System Surgical Procedures/adverse effects ; Malnutrition/epidemiology ; Malnutrition/etiology
    Language English
    Publishing date 2024-04-08
    Publishing country England
    Document type Systematic Review ; Journal Article ; Review
    ISSN 1469-493X
    ISSN (online) 1469-493X
    DOI 10.1002/14651858.CD008879.pub3
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article ; Online: Made to measure: An introduction to quantifying microscopy data in the life sciences.

    Culley, Siân / Caballero, Alicia Cuber / Burden, Jemima J / Uhlmann, Virginie

    Journal of microscopy

    2023  

    Abstract: Images are at the core of most modern biological experiments and are used as a major source of quantitative information. Numerous algorithms are available to process images and make them more amenable to be measured. Yet the nature of the quantitative ... ...

    Abstract Images are at the core of most modern biological experiments and are used as a major source of quantitative information. Numerous algorithms are available to process images and make them more amenable to be measured. Yet the nature of the quantitative output that is useful for a given biological experiment is uniquely dependent upon the question being investigated. Here, we discuss the 3 main types of information that can be extracted from microscopy data: intensity, morphology, and object counts or categorical labels. For each, we describe where they come from, how they can be measured, and what may affect the relevance of these measurements in downstream data analysis. Acknowledging that what makes a measurement 'good' is ultimately down to the biological question being investigated, this review aims at providing readers with a toolkit to challenge how they quantify their own data and be critical of conclusions drawn from quantitative bioimage analysis experiments.
    Language English
    Publishing date 2023-06-02
    Publishing country England
    Document type Journal Article
    ZDB-ID 219263-9
    ISSN 1365-2818 ; 0022-2720
    ISSN (online) 1365-2818
    ISSN 0022-2720
    DOI 10.1111/jmi.13208
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Curvularia Pneumonia Presenting as a Mass-Like Lesion.

    Thekkedath, Eby / Burden, Zachary / Steinberg, Scott / Cury, James

    Cureus

    2022  Volume 14, Issue 6, Page(s) e25933

    Abstract: ... ...

    Abstract Curvularia
    Language English
    Publishing date 2022-06-14
    Publishing country United States
    Document type Case Reports
    ZDB-ID 2747273-5
    ISSN 2168-8184
    ISSN 2168-8184
    DOI 10.7759/cureus.25933
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Book ; Online: Coalescence and sampling distributions for Feller diffusions

    Burden, Conrad J. / Griffiths, Robert C.

    2022  

    Abstract: ... s; t)$, defined as the finite number of ancestors at a time $s$ in the past of a sample of size $n$ ...

    Abstract Consider the diffusion process defined by the forward equation $u_t(t, x) = \tfrac{1}{2}\{x u(t, x)\}_{xx} - \alpha \{x u(t, x)\}_{x}$ for $t, x \ge 0$ and $-\infty < \alpha < \infty$, with an initial condition $u(0, x) = \delta(x - x_0)$. This equation was introduced and solved by Feller to model the growth of a population of independently reproducing individuals. We explore important coalescent processes related to Feller's solution. For any $\alpha$ and $x_0 > 0$ we calculate the distribution of the random variable $A_n(s; t)$, defined as the finite number of ancestors at a time $s$ in the past of a sample of size $n$ taken from the infinite population of a Feller diffusion at a time $t$ since since its initiation. In a subcritical diffusion we find the distribution of population and sample coalescent trees from time $t$ back, conditional on non-extinction as $t \to \infty$. In a supercritical diffusion we construct a coalescent tree which has a single founder and derive the distribution of coalescent times.

    Comment: 32 pages, 6 figures. New diagrams have been added and some rewording to sections 1 to 6. Section 7 of the original manuscript contained an error which has necessitated rewriting the original sections 7 to 9 as a new and more straightforward Section 7 which contains new results as a theorem and a corollary
    Keywords Mathematics - Probability ; Quantitative Biology - Populations and Evolution
    Subject code 519
    Publishing date 2022-10-23
    Publishing country us
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article ; Online: Effectiveness of diet, psychological, and exercise therapies for the management of bile acid diarrhoea in adults: A systematic review.

    McKenzie, Yvonne A / Sremanakova, Jana / Todd, Chris / Burden, Sorrel

    Journal of human nutrition and dietetics : the official journal of the British Dietetic Association

    2022  Volume 35, Issue 6, Page(s) 1087–1104

    Abstract: Background: Bile acid diarrhoea (BAD) causes chronic diarrhoea and is primarily treated pharmacologically. This systematic review aimed to evaluate the effectiveness of non-pharmacological therapies for evidence-based management of BAD in adults.: ... ...

    Abstract Background: Bile acid diarrhoea (BAD) causes chronic diarrhoea and is primarily treated pharmacologically. This systematic review aimed to evaluate the effectiveness of non-pharmacological therapies for evidence-based management of BAD in adults.
    Methods: A systematic review of the medical literature was performed from 1975 to 13 July 2021 to identify studies on diet, psychological, and exercise therapies that met diagnostic criteria for BAD in adults with diarrhoea. Effectiveness was judged by responder or improvement in diarrhoea at study endpoint according to each study's definition of diarrhoea. Therapeutic effect on abdominal pain and flatulence was also measured. Risk of bias was assessed using the Risk Of Bias In Non-Randomised Studies of Interventions tool. A narrative review was conducted using 'Synthesis Without Meta-analysis' guidance. Certainty of the evidence was assessed using Grading of Recommendations Assessment, Development, and Evaluation.
    Results: Eight prospective cohort studies were identified on diet therapies from 2 weeks to over 2 years involving 192 patients. No psychological or exercise therapies were found. Carbohydrate modification (one study, n = 2) in primary BAD, and dietary fat intake reductions (five studies, n = 181) and an exclusive elemental diet therapy (two studies, n = 9) in secondary BAD, showed beneficial directions of effect on diarrhoea, abdominal pain, and flatulence. Risks of bias for each study and across studies for each therapy type were serious. Certainty of the evidence was very low for all outcomes.
    Conclusions: No conclusions could be drawn on the effectiveness of diet, psychological, or exercise therapies on diarrhoea, abdominal pain, and flatulence for the management of BAD in adults. High-quality randomised controlled trials are needed.
    MeSH term(s) Adult ; Humans ; Bile Acids and Salts ; Flatulence/complications ; Prospective Studies ; Diarrhea/therapy ; Diarrhea/etiology ; Diet ; Abdominal Pain/complications ; Exercise Therapy
    Chemical Substances Bile Acids and Salts
    Language English
    Publishing date 2022-04-09
    Publishing country England
    Document type Systematic Review ; Journal Article ; Review
    ZDB-ID 645183-4
    ISSN 1365-277X ; 0952-3871 ; 1465-8178
    ISSN (online) 1365-277X
    ISSN 0952-3871 ; 1465-8178
    DOI 10.1111/jhn.13005
    Database MEDical Literature Analysis and Retrieval System OnLINE

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