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  1. Article: First documentation on herpetofauna diversity in Gunung Belumut Amenity Forest, Peninsular Malaysia: Implications for conservation in an Environmentally Sensitive Area (ESA).

    Ramli, Farah Farhana / Munian, Kaviarasu / Mahyudin, Nur Aina Amira / Othman, Nursyuhada / Haris, Hidayah / Abdullah-Fauzi, Nurfatiha Akmal Fawwazah / Sariyati, Nur Hartini / Ilham-Norhakim, Mohd Lokman / Abdul-Latiff, Muhammad Abu Bakar

    Biodiversity data journal

    2024  Volume 12, Page(s) e108476

    Abstract: Malaysia is blessed with lush tropical rainforests that harbour an exceptional diversity of amphibians and reptiles. However, compared to other animal groups, amphibians and reptiles have received limited attention in research, despite their ecological ... ...

    Abstract Malaysia is blessed with lush tropical rainforests that harbour an exceptional diversity of amphibians and reptiles. However, compared to other animal groups, amphibians and reptiles have received limited attention in research, despite their ecological significance. With amphibians and reptile species having been declining rapidly due to anthropogenic activities, there is a pressing need to conserve these species and their habitats. Environmentally Sensitive Areas (ESAs) are designated regions that are beneficial due to their critical role in providing essential ecosystem services and serving as repositories of biodiversity. Nonetheless, the classification of ESAs in Malaysia lacks biological elements and only focuses on physical attributes. To enhance the current ESA classification framework by integrating biological components, there is an urgent need to obtain information on diversity and habitat in Malaysia. Therefore, the objectives of this study were twofold: to determine the diversity of amphibians and reptiles in Gunung Belumut Amenity Forest and to conduct a comparative analysis between the herpetofauna assemblages in Gunung Belumut with other forest reserves in Peninsular Malaysia. The survey was carried out between March and June 2022, with additional sampling conducted in February 2023. The Visual Encounter Survey (VES) and pitfall trap methods were employed to survey the herpetofauna species, focusing on both aquatic and terrestrial habitats within the study area. A total of 210 individuals representing 38 species of herpetofauna were recorded, comprising 18 amphibian and 20 reptile species. Amongst the observed species,
    Language English
    Publishing date 2024-01-09
    Publishing country Bulgaria
    Document type Journal Article
    ZDB-ID 2736709-5
    ISSN 1314-2828
    ISSN 1314-2828
    DOI 10.3897/BDJ.12.e108476
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Ethnoprimatology reveals new extended distribution of critically endangered banded langur Presbytis femoralis (Martin, 1838) in Pahang, Malaysia: Insights from indigenous traditional knowledge and molecular analysis.

    Haris, Hidayah / Othman, Nursyuhada / Kaviarasu, Munian / Najmuddin, Muhammad Faudzir / Abdullah-Fauzi, Nurfatiha Akmal Fawwazah / Ramli, Farah Farhana / Sariyati, Nur Hartini / Ilham-Norhakim, Mohd Lokman / Md-Zain, Badrul Munir / Abdul-Latiff, Muhammad Abu Bakar

    American journal of primatology

    2024  , Page(s) e23631

    Abstract: The banded langur (Presbytis femoralis) is a critically endangered primate, restricted to Johor, Malaysia, with an estimated population size of less than 500 individuals. Traditionally, distribution studies on this highly threatened primate have relied ... ...

    Abstract The banded langur (Presbytis femoralis) is a critically endangered primate, restricted to Johor, Malaysia, with an estimated population size of less than 500 individuals. Traditionally, distribution studies on this highly threatened primate have relied on conventional methods such as DNA identification, live counting, and camera trapping. However, ethnoprimatology offers an alternative approach to data collection, involving the active participation of indigenous and local communities possessing valuable knowledge and experience with local primate species. This study employed an integrated approach incorporating ethnoprimatology by utilizing pooled local expert opinion, local surveys, interviews, and fecal DNA analysis, resulting in a novel distribution range for the banded langur. The combination of expert opinions revealed this species' most optimistic distribution scenario across Johor and Pahang, inhabiting various ecosystems, including lowland forests, peat swamps, and human-modified landscapes. Further interviews and surveys conducted within the Orang Asli community in Tasik Chini and Tasek Bera have provided additional support for the revised distribution, documenting occurrences of banded langur utilization in indigenous practices, such as food consumption, cultural beliefs, medicinal applications, and craftsmanship. Phylogenetic analysis demonstrated genetic differentiation between populations in Johor and Pahang, with the populations in the southern part of Peninsular Malaysia likely serving as ancestral sources for other populations. Consequently, this study not only elucidated the updated distribution of banded langur through DNA records and direct observations but also established the efficacy of ethnoprimatology as a precursory tool for uncovering the present distribution patterns of other primate species in Malaysia.
    Language English
    Publishing date 2024-05-02
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1495834-X
    ISSN 1098-2345 ; 0275-2565
    ISSN (online) 1098-2345
    ISSN 0275-2565
    DOI 10.1002/ajp.23631
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Environmental DNA metabarcoding of freshwater fish in Malaysian tropical rivers using short-read nanopore sequencing as a potential biomonitoring tool.

    Munian, Kaviarasu / Ramli, Farah Farhana / Othman, Nursyuhada / Mahyudin, Nur Aina Amira / Sariyati, Nur Hartini / Abdullah-Fauzi, Nurfatiha Akmal Fawwazah / Haris, Hidayah / Ilham-Norhakim, Mohd Lokman / Abdul-Latiff, Muhammad Abu Bakar

    Molecular ecology resources

    2024  Volume 24, Issue 4, Page(s) e13936

    Abstract: The approach of combining cost-effective nanopore sequencing and emerging environmental DNA (eDNA) metabarcoding could prove to be a promising tool for biodiversity documentation, especially in Malaysia. Given the substantial funding constraints in ... ...

    Abstract The approach of combining cost-effective nanopore sequencing and emerging environmental DNA (eDNA) metabarcoding could prove to be a promising tool for biodiversity documentation, especially in Malaysia. Given the substantial funding constraints in recent years, especially in relation to the country's biodiversity, many researchers have been limited to conduct restricted research without extended monitoring periods, potentially hindering comprehensive surveys and could compromise the conservation efforts. Therefore, the present study aimed to evaluate the application of eDNA metabarcoding on freshwater fish using short reads generated through nanopore sequencing. This assessment focused on species detection in three selected rivers within the Endau Rompin Landscape in Malaysia. Additionally, the study compared levels of species detection between eDNA metabarcoding and conventional sampling methods, examined the effectiveness of primer choice, and applied both metabarcoding and shotgun sequencing to the eDNA approach. We successfully identified a total of 22 and 71 species with an identification threshold of >97% and >90%, respectively, through the MinION platform. The eDNA metabarcoding approach detected over 13% more freshwater fish species than when the conventional method was used. Notably, the distinction in freshwater fish detection between eDNA primers for 12S rRNA and cytochrome oxidase I was insignificant. The cost for eDNA metabarcoding proved to be more effective compared to conventional sampling with cost reduction at 33.4%. With favourable cost-effectiveness and increased species detection, eDNA metabarcoding could complement existing methods, enhance holistic diversity documentation for targeted habitats and facilitate effective conservation planning.
    MeSH term(s) Animals ; DNA, Environmental ; Biological Monitoring ; DNA Barcoding, Taxonomic/methods ; Nanopore Sequencing ; Environmental Monitoring/methods ; Fresh Water ; Fishes/genetics ; Ecosystem ; Biodiversity
    Chemical Substances DNA, Environmental
    Language English
    Publishing date 2024-02-28
    Publishing country England
    Document type Journal Article
    ZDB-ID 2406833-0
    ISSN 1755-0998 ; 1755-098X
    ISSN (online) 1755-0998
    ISSN 1755-098X
    DOI 10.1111/1755-0998.13936
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: First documentation on herpetofauna diversity in Gunung Belumut Amenity Forest, Peninsular Malaysia: Implications for conservation in an Environmentally Sensitive Area (ESA)

    Ramli, Farah Farhana / Munian, Kaviarasu / Mahyudin, Nur Aina Amira / Othman, Nursyuhada / Haris, Hidayah / Abdullah-Fauzi, Nurfatiha Akmal Fawwazah / Sariyati, Nur Hartini / Ilham-Norhakim, Mohd Lokman / Abdul-Latiff, Muhammad Abu Bakar

    Biodiversity Data Journal. 2024 Jan. 09, v. 12 p.e108476-

    2024  

    Abstract: Malaysia is blessed with lush tropical rainforests that harbour an exceptional diversity of amphibians and reptiles. However, compared to other animal groups, amphibians and reptiles have received limited attention in research, despite their ecological ... ...

    Abstract Malaysia is blessed with lush tropical rainforests that harbour an exceptional diversity of amphibians and reptiles. However, compared to other animal groups, amphibians and reptiles have received limited attention in research, despite their ecological significance. With amphibians and reptile species having been declining rapidly due to anthropogenic activities, there is a pressing need to conserve these species and their habitats. Environmentally Sensitive Areas (ESAs) are designated regions that are beneficial due to their critical role in providing essential ecosystem services and serving as repositories of biodiversity. Nonetheless, the classification of ESAs in Malaysia lacks biological elements and only focuses on physical attributes. To enhance the current ESA classification framework by integrating biological components, there is an urgent need to obtain information on diversity and habitat in Malaysia. Therefore, the objectives of this study were twofold: to determine the diversity of amphibians and reptiles in Gunung Belumut Amenity Forest and to conduct a comparative analysis between the herpetofauna assemblages in Gunung Belumut with other forest reserves in Peninsular Malaysia. The survey was carried out between March and June 2022, with additional sampling conducted in February 2023. The Visual Encounter Survey (VES) and pitfall trap methods were employed to survey the herpetofauna species, focusing on both aquatic and terrestrial habitats within the study area. A total of 210 individuals representing 38 species of herpetofauna were recorded, comprising 18 amphibian and 20 reptile species. Amongst the observed species, Limnonectes blythii was the most frequently encountered amphibian, with 59 individuals observed, while the dominant reptile species was Cyrtodactylus consobrinus, represented by eight individuals. This pioneering study serves as a vital baseline documentation of the amphibian and reptile assemblages in Gunung Belumut Amenity Forest. It provides valuable information for identifying extant herpetofauna species, including those of potential conservation concern or rarity. These findings contribute to ongoing conservation efforts dedicated to the preservation of herpetofauna within the region. By understanding the diversity and distribution patterns of amphibians and reptiles in Gunung Belumut, effective conservation strategies can be developed to protect these species and their habitats.
    Keywords Cyrtodactylus ; amenity forests ; amphibians ; biodiversity ; ecosystems ; habitats ; herpetofauna ; pitfall traps ; reptiles ; surveys ; Malaysia ; Amphibia ; reptile ; protected area ; species richness
    Language English
    Dates of publication 2024-0109
    Publishing place Pensoft Publishers
    Document type Article ; Online
    ZDB-ID 2736709-5
    ISSN 1314-2828
    ISSN 1314-2828
    DOI 10.3897/BDJ.12.e108476
    Database NAL-Catalogue (AGRICOLA)

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  5. Article: Determining the diet of wild Asian elephants (

    Mohd-Radzi, Nor Hafisa Syafina / Karuppannan, Kayal Vizi / Abdullah-Fauzi, Nurfatiha Akmal Fawwazah / Mohd-Ridwan, Abd Rahman / Othman, Nursyuhada / Muhammad Abu Bakar, Abdul-Latiff / Gani, Millawati / Abdul-Razak, Mohd Firdaus Ariff / Md-Zain, Badrul Munir

    Biodiversity data journal

    2022  Volume 10, Page(s) e89752

    Abstract: Human-elephant conflict (HEC) contributes to the increasing death of Asian elephants due to road accidents, retaliatory killings and fatal infections from being trapped in snares. Understanding the diet of elephants throughout Peninsular Malaysia remains ...

    Abstract Human-elephant conflict (HEC) contributes to the increasing death of Asian elephants due to road accidents, retaliatory killings and fatal infections from being trapped in snares. Understanding the diet of elephants throughout Peninsular Malaysia remains crucial to improve their habitat quality and reduce scenarios of HEC. DNA metabarcoding allows investigating the diet of animals without direct observation, especially in risky conflict areas. The aim of this study was to determine: i) the diet of wild Asian elephants from HEC areas in Peninsular Malaysia using DNA metabarcoding and ii) the influence of distinct environmental parameters at HEC locations on their feeding patterns. DNA was extracted from 39 faecal samples and pooled into 12 groups representing the different sample locations: Kuala Koh, Kenyir, Ulu Muda, Sira Batu, Kupang-Grik, Bumbun Tahan, Belum-Temengor, Grik, Kampung Pagi, Kampung Kuala Balah, Aring 10 and the National Elephant Conservation Centre, which served as a positive control for this study. DNA amplification and sequencing targeted the ribulose-bisphosphate carboxylase gene using the next-generation sequencing Illumina iSeq100 platform. Overall, we identified 35 orders, 88 families, 196 genera and 237 species of plants in the diet of the Asian elephants at HEC hotspots.
    Language English
    Publishing date 2022-10-20
    Publishing country Bulgaria
    Document type Journal Article
    ZDB-ID 2736709-5
    ISSN 1314-2828
    ISSN 1314-2828
    DOI 10.3897/BDJ.10.e89752
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Determining the diet of wild Asian elephants (Elephas maximus) at human–elephant conflict areas in Peninsular Malaysia using DNA metabarcoding

    Mohd-Radzi, Nor Hafisa Syafina / Karuppannan, Kayal Vizi / Abdullah-Fauzi, Nurfatiha Akmal Fawwazah / Mohd-Ridwan, Abd Rahman / Othman, Nursyuhada / Muhammad Abu Bakar, Abdul-Latiff / Gani, Millawati / Abdul-Razak, Mohd Firdaus Ariff / Md-Zain, Badrul Munir

    Biodiversity Data Journal. 2022 Oct. 20, v. 10 p.e89752-

    2022  

    Abstract: Human–elephant conflict (HEC) contributes to the increasing death of Asian elephants due to road accidents, retaliatory killings and fatal infections from being trapped in snares. Understanding the diet of elephants throughout Peninsular Malaysia remains ...

    Abstract Human–elephant conflict (HEC) contributes to the increasing death of Asian elephants due to road accidents, retaliatory killings and fatal infections from being trapped in snares. Understanding the diet of elephants throughout Peninsular Malaysia remains crucial to improve their habitat quality and reduce scenarios of HEC. DNA metabarcoding allows investigating the diet of animals without direct observation, especially in risky conflict areas. The aim of this study was to determine: i) the diet of wild Asian elephants from HEC areas in Peninsular Malaysia using DNA metabarcoding and ii) the influence of distinct environmental parameters at HEC locations on their feeding patterns. DNA was extracted from 39 faecal samples and pooled into 12 groups representing the different sample locations: Kuala Koh, Kenyir, Ulu Muda, Sira Batu, Kupang-Grik, Bumbun Tahan, Belum-Temengor, Grik, Kampung Pagi, Kampung Kuala Balah, Aring 10 and the National Elephant Conservation Centre, which served as a positive control for this study. DNA amplification and sequencing targeted the ribulose-bisphosphate carboxylase gene using the next-generation sequencing Illumina iSeq100 platform. Overall, we identified 35 orders, 88 families, 196 genera and 237 species of plants in the diet of the Asian elephants at HEC hotspots. Ficus (Moraceae), Curcuma (Zingiberaceae), Phoenix (Arecaceae), Maackia (Fabaceae), Garcinia (Clusiaceae) and Dichapetalum (Dichapetalaceae) were the highly abundant dietary plants. The plants successfully identified in this study could be used by the Department of Wildlife and National Parks (PERHILITAN) to create buffer zones by planting the recommended dietary plants around HEC locations and trails of elephants within Central Forest Spine (CFS) landscape.
    Keywords Arecaceae ; Curcuma ; DNA ; DNA barcoding ; Dichapetalum ; Elephas maximus ; Ficus ; Garcinia ; Maackia ; biodiversity ; death ; diet ; forests ; genes ; habitats ; landscapes ; ribulose-bisphosphate carboxylase ; wildlife ; Malaysia ; Asian elephant ; rbcL ; DNA metabarcoding ; next-generation sequencing
    Language English
    Dates of publication 2022-1020
    Publishing place Pensoft Publishers
    Document type Article ; Online
    ZDB-ID 2736709-5
    ISSN 1314-2828
    ISSN 1314-2828
    DOI 10.3897/BDJ.10.e89752
    Database NAL-Catalogue (AGRICOLA)

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  7. Article ; Online: Determining the Dietary Preferences of Wild Asian Elephants (

    Abdullah-Fauzi, Nurfatiha Akmal Fawwazah / Karuppannan, Kayal Vizi / Mohd-Radzi, Nor Hafisa Syafina / Gani, Millawati / Mohd-Ridwan, Abd Rahman / Othman, Nursyuhada / Haris, Hidayah / Sariyati, Nur Hartini / Aifat, Nor Rahman / Abdul-Latiff, Muhammad Abu Bakar / Abdul-Razak, Mohd Firdaus Ariff / Md-Zain, Badrul Munir

    Zoological studies

    2022  Volume 61, Page(s) e60

    Abstract: The world's largest terrestrial mammal, Asian elephants, are known to have enormous feeding needs. Several factors such as season, sex, age, and daily activities influence the amount of food required by an individual. Generally, captive elephants have a ... ...

    Abstract The world's largest terrestrial mammal, Asian elephants, are known to have enormous feeding needs. Several factors such as season, sex, age, and daily activities influence the amount of food required by an individual. Generally, captive elephants have a limited choice of food on a daily basis compared with that of elephants in the wild. Elephants in captivity are fed according to a prepared feeding schedule, whereas wild elephants are free to choose the type of plants that they consume in their natural habitat. In the past, ecological observations have been widely used to determine the diet of wild elephants. However, the molecular approach has never been carried out. In the present study, we aimed to; 1) identify the plant diet of wild Asian elephants in Taman Negara National Park (TNNP) according to their sex and age using high-throughput DNA metabarcoding; and 2) determine the dietary formulation of captive elephants based on the generated plant metabarcoding database. DNA was extracted from 24 individual fecal samples collected using noninvasive sampling techniques from TNNP and the National Elephant Conservation Centre (NECC) Kuala Gandah. Seven pooled samples from male adult, female adult, male subadult, female subadult, male juvenile, female juvenile, and captive elephants were amplified and sequenced targeting the trnL region (50-150 base pairs). The CLC Genomic Workbench and PAST 4.02 software were used for data analysis. In total, 24 orders, 41 families, 233 genera, and 306 species of plants were successfully detected in the diet of the Asian elephants. The most abundant plant genera consumed were
    Language English
    Publishing date 2022-11-29
    Publishing country China (Republic : 1949- )
    Document type Journal Article
    ZDB-ID 2105348-0
    ISSN 1810-522X ; 1810-522X
    ISSN (online) 1810-522X
    ISSN 1810-522X
    DOI 10.6620/ZS.2022.61-60
    Database MEDical Literature Analysis and Retrieval System OnLINE

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