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  1. Article ; Online: Correction: In vivo genome-wide CRISPR screening identifies CITED2 as a driver of prostate cancer bone metastasis.

    Arriaga, Juan M / Ronaldson-Bouchard, Kacey / Picech, Florencia / Nunes de Almeida, Francisca / Afari, Stephanie / Chhouri, Houssein / Vunjak-Novakovic, Gordana / Abate-Shen, Cory

    Oncogene

    2024  

    Language English
    Publishing date 2024-04-16
    Publishing country England
    Document type Published Erratum
    ZDB-ID 639046-8
    ISSN 1476-5594 ; 0950-9232
    ISSN (online) 1476-5594
    ISSN 0950-9232
    DOI 10.1038/s41388-024-03031-2
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: In vivo genome-wide CRISPR screening identifies CITED2 as a driver of prostate cancer bone metastasis.

    Arriaga, Juan M / Ronaldson-Bouchard, Kacey / Picech, Florencia / Nunes de Almeida, Francisca / Afari, Stephanie / Chhouri, Houssein / Vunjak-Novakovic, Gordana / Abate-Shen, Cory

    Oncogene

    2024  Volume 43, Issue 17, Page(s) 1303–1315

    Abstract: Most cancer deaths are due to metastatic dissemination to distant organs. Bone is the most frequently affected organ in metastatic prostate cancer and a major cause of prostate cancer deaths. Yet, our partial understanding of the molecular factors that ... ...

    Abstract Most cancer deaths are due to metastatic dissemination to distant organs. Bone is the most frequently affected organ in metastatic prostate cancer and a major cause of prostate cancer deaths. Yet, our partial understanding of the molecular factors that drive bone metastasis has been a limiting factor for developing preventative and therapeutic strategies to improve patient survival and well-being. Although recent studies have uncovered molecular alterations that occur in prostate cancer metastasis, their functional relevance for bone metastasis is not well understood. Using genome-wide CRISPR activation and inhibition screens we have identified multiple drivers and suppressors of prostate cancer metastasis. Through functional validation, including an innovative organ-on-a-chip invasion platform for studying bone tropism, our study identifies the transcriptional modulator CITED2 as a novel driver of prostate cancer bone metastasis and uncovers multiple new potential molecular targets for bone metastatic disease.
    Language English
    Publishing date 2024-03-07
    Publishing country England
    Document type Journal Article
    ZDB-ID 639046-8
    ISSN 1476-5594 ; 0950-9232
    ISSN (online) 1476-5594
    ISSN 0950-9232
    DOI 10.1038/s41388-024-02995-5
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: OncoLoop: A Network-Based Precision Cancer Medicine Framework.

    Vasciaveo, Alessandro / Arriaga, Juan Martín / de Almeida, Francisca Nunes / Zou, Min / Douglass, Eugene F / Picech, Florencia / Shibata, Maho / Rodriguez-Calero, Antonio / de Brot, Simone / Mitrofanova, Antonina / Chua, Chee Wai / Karan, Charles / Realubit, Ronald / Pampou, Sergey / Kim, Jaime Y / Afari, Stephanie N / Mukhammadov, Timur / Zanella, Luca / Corey, Eva /
    Alvarez, Mariano J / Rubin, Mark A / Shen, Michael M / Califano, Andrea / Abate-Shen, Cory

    Cancer discovery

    2022  Volume 13, Issue 2, Page(s) 386–409

    Abstract: Prioritizing treatments for individual patients with cancer remains challenging, and performing coclinical studies using patient-derived models in real time is often unfeasible. To circumvent these challenges, we introduce OncoLoop, a precision medicine ... ...

    Abstract Prioritizing treatments for individual patients with cancer remains challenging, and performing coclinical studies using patient-derived models in real time is often unfeasible. To circumvent these challenges, we introduce OncoLoop, a precision medicine framework that predicts drug sensitivity in human tumors and their preexisting high-fidelity (cognate) model(s) by leveraging drug perturbation profiles. As a proof of concept, we applied OncoLoop to prostate cancer using genetically engineered mouse models (GEMM) that recapitulate a broad spectrum of disease states, including castration-resistant, metastatic, and neuroendocrine prostate cancer. Interrogation of human prostate cancer cohorts by Master Regulator (MR) conservation analysis revealed that most patients with advanced prostate cancer were represented by at least one cognate GEMM-derived tumor (GEMM-DT). Drugs predicted to invert MR activity in patients and their cognate GEMM-DTs were successfully validated in allograft, syngeneic, and patient-derived xenograft (PDX) models of tumors and metastasis. Furthermore, OncoLoop-predicted drugs enhanced the efficacy of clinically relevant drugs, namely, the PD-1 inhibitor nivolumab and the AR inhibitor enzalutamide.
    Significance: OncoLoop is a transcriptomic-based experimental and computational framework that can support rapid-turnaround coclinical studies to identify and validate drugs for individual patients, which can then be readily adapted to clinical practice. This framework should be applicable in many cancer contexts for which appropriate models and drug perturbation data are available. This article is highlighted in the In This Issue feature, p. 247.
    MeSH term(s) Male ; Mice ; Animals ; Humans ; Prostatic Neoplasms, Castration-Resistant/pathology ; Precision Medicine ; Androgen Receptor Antagonists ; Transcriptome ; Gene Expression Profiling ; Nitriles ; Receptors, Androgen/genetics
    Chemical Substances Androgen Receptor Antagonists ; Nitriles ; Receptors, Androgen
    Language English
    Publishing date 2022-11-15
    Publishing country United States
    Document type Journal Article ; Research Support, N.I.H., Extramural ; Research Support, Non-U.S. Gov't
    ZDB-ID 2625242-9
    ISSN 2159-8290 ; 2159-8274
    ISSN (online) 2159-8290
    ISSN 2159-8274
    DOI 10.1158/2159-8290.CD-22-0342
    Database MEDical Literature Analysis and Retrieval System OnLINE

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