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  1. AU="Akhtar, Suraiya"
  2. AU="Georgel, Philippe"
  3. AU="Gruenewald, Leon D"
  4. AU="Charron, Morgane"
  5. AU="Leona S. Alizadeh" AU="Leona S. Alizadeh"
  6. AU="Soriano, Stéphane"
  7. AU="Lin, Pao-Yen"
  8. AU="Mudali, Gayathri"
  9. AU="McElveen, John T"
  10. AU="Kraimps, Jean-Louis"
  11. AU="Patel, Sheila K"
  12. AU="Zian, Zeineb"
  13. AU="Langley, Jonathan"
  14. AU="Bell, Thomas G."
  15. AU="Harris, Charles"
  16. AU="Lai, Renfa"
  17. AU="Sakane, Tatsuya"
  18. AU="Mirza, I."
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  20. AU="Wildman, D"
  21. AU="Manghi, Manoel"
  22. AU="van Dinther, Maarten"
  23. AU="Adams, Ashley L"
  24. AU="Zhang, Er-Bin"
  25. AU="Diuk-Wasser, Maria A"
  26. AU="Chowdhury, Muhtamim"
  27. AU="Rivas, Manuel A"
  28. AU="Mangelis, Anastasios"
  29. AU="Simpson, Tina Y"
  30. AU="Li, Peirang"
  31. AU="Zhang, Zhao-Liang"
  32. AU="Perner, Sven"
  33. AU=Suwanwongse Kulachanya AU=Suwanwongse Kulachanya
  34. AU="Rose, Jacqueline"
  35. AU="E Lostis"

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  1. Artikel: Genome-wide analysis of respiratory burst oxidase homolog (

    Begum, Khaleda / Das, Ankur / Ahmed, Raja / Akhtar, Suraiya / Kulkarni, Ram / Banu, Sofia

    Frontiers in plant science

    2024  Band 14, Seite(n) 1326080

    Abstract: Respiratory burst oxidase homolog ( ...

    Abstract Respiratory burst oxidase homolog (
    Sprache Englisch
    Erscheinungsdatum 2024-02-09
    Erscheinungsland Switzerland
    Dokumenttyp Journal Article
    ZDB-ID 2613694-6
    ISSN 1664-462X
    ISSN 1664-462X
    DOI 10.3389/fpls.2023.1326080
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  2. Artikel ; Online: Genome-wide investigation of Cytochrome P450 superfamily of Aquilaria agallocha: Association with terpenoids and phenylpropanoids biosynthesis.

    Das, Ankur / Begum, Khaleda / Akhtar, Suraiya / Ahmed, Raja / Tamuli, Phatik / Kulkarni, Ram / Banu, Sofia

    International journal of biological macromolecules

    2023  Band 234, Seite(n) 123758

    Abstract: Agarwood is a dark resinous wood, produced when Aquilaria tree responds to wounding and microbial infection resulting in the accumulation of fragrant metabolites. Sesquiterpenoids and 2-(2-phenylethyl) chromones are the major phytochemicals in agarwood ... ...

    Abstract Agarwood is a dark resinous wood, produced when Aquilaria tree responds to wounding and microbial infection resulting in the accumulation of fragrant metabolites. Sesquiterpenoids and 2-(2-phenylethyl) chromones are the major phytochemicals in agarwood and Cytochrome P450s (CYPs) are one of the important enzymes in the biosynthesis of these fragrant chemicals. Thus, understanding the repertoire of CYP superfamily in Aquilaria can not only give insights into the fundamentals of agarwood formation, but can also provide a tool for the overproduction of the aroma chemicals. Therefore, current study was designed to investigate CYPs of an agarwood producing plant, Aquilaria agallocha. We identified 136 CYP genes from A. agallocha genome (AaCYPs) and classified them into 8 clans and 38 families. The promoter regions had stress and hormone-related cis-regulatory elements which indicate their participation in the stress response. Duplication and synteny analysis revealed segmental and tandem duplicated and evolutionary related CYP members in other plants. Potential members involved in the biosynthesis of sesquiterpenoids and phenylpropanoids were identified and found to be upregulated in methyl jasmonate-induced callus and infected Aquilaria trees by real-time quantitative PCR analyses. This study highlights the possible involvement of AaCYPs in agarwood resin development and their complex regulation during stress exposure.
    Mesh-Begriff(e) Humans ; Terpenes/metabolism ; Chromones ; Sesquiterpenes/metabolism ; Thymelaeaceae/genetics ; Cytochrome P-450 Enzyme System/genetics ; Cytochrome P-450 Enzyme System/metabolism ; Wood/metabolism
    Chemische Substanzen Terpenes ; Chromones ; Sesquiterpenes ; Cytochrome P-450 Enzyme System (9035-51-2)
    Sprache Englisch
    Erscheinungsdatum 2023-02-20
    Erscheinungsland Netherlands
    Dokumenttyp Journal Article
    ZDB-ID 282732-3
    ISSN 1879-0003 ; 0141-8130
    ISSN (online) 1879-0003
    ISSN 0141-8130
    DOI 10.1016/j.ijbiomac.2023.123758
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  3. Artikel ; Online: Evaluation of morphological traits, biochemical parameters and seeding availability pattern among Citrus limon 'Assam lemon' accessions across Assam.

    Akhtar, Suraiya / Ahmed, Raja / Begum, Khaleda / Das, Ankur / Saikia, Sarat / Laskar, Rafiul Amin / Banu, Sofia

    Scientific reports

    2024  Band 14, Heft 1, Seite(n) 3886

    Abstract: The Assam lemon is a highly valued Citrus cultivar known for its unique aroma, flavor, and appearance. This study aimed to investigate the morphological, seeding pattern and biochemical variations within 132 populations of Assam lemon from across 22 ... ...

    Abstract The Assam lemon is a highly valued Citrus cultivar known for its unique aroma, flavor, and appearance. This study aimed to investigate the morphological, seeding pattern and biochemical variations within 132 populations of Assam lemon from across 22 districts of Assam along with the control samples, with the objective to offer comprehensive understanding that could facilitate the improvement of breeding programs and further improvement of this important cultivar. Clustering based on UPGMA algorithm for morphological and seeding pattern data were analysed at population level, revealed two major clusters, where all the populations of Upper Assam districts were in the same cluster with the original stock (control population). The populations from Tinsukia and Dhemaji districts displayed more close similarities with the control population in comparison to populations of Upper Assam districts. Another interesting observation was regarding flowering patterns, while populations from Upper Assam districts excluding Golaghat district displayed both bisexual and unisexual flowers with less concentration of unisexual flowers, other remaining districts had bisexual and unisexual flowers of almost equal concentration. Unisexual flowers contained only the male reproductive organs with 40 anthers, while bisexual flowers had 36 anthers. Seeding patterns were examined across the districts, and it was found that populations from Tinsukia, Dhemaji, Lakhimpur, Dibrugarh, Jorhat, and the control population exhibited seedless characteristic while populations from other selected districts displayed a combination of seedless and seeded traits. Interestingly, Golaghat district appears as the linking district and showed availability of both seeded and seedless Assam lemon fruit, connecting the regions of Barak valley, Central, Lower, North and Upper Assam. Biochemical analysis showed significant variations across districts, however, the populations from Dhemaji, Tinsukia, Lakhimpur, Dibrugarh, and Jorhat districts displayed similarity with the control population. The study also investigated variability in soil nutrient content revealing substantial variation among the populations studied. This comprehensive investigation provides valuable insights into the morphological, seeding pattern, and biochemical diversity within the Assam lemon cultivar. These findings can be instrumental in breeding programs to enhance the cultivar, particularly in producing high-quality seedless fruits to meet consumer demands.
    Mesh-Begriff(e) Humans ; Male ; Citrus/chemistry ; Plant Breeding ; Fruit/chemistry ; Seeds ; Phenotype
    Sprache Englisch
    Erscheinungsdatum 2024-02-16
    Erscheinungsland England
    Dokumenttyp Journal Article
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-024-54392-3
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  4. Artikel: An overview of basic molecular biology of SARS-CoV-2 and current COVID-19 prevention strategies.

    Das, Ankur / Ahmed, Raja / Akhtar, Suraiya / Begum, Khaleda / Banu, Sofia

    Gene reports

    2021  Band 23, Seite(n) 101122

    Abstract: Coronavirus Disease 2019 (COVID-19) manifests as extreme acute respiratory conditions caused by a novel beta coronavirus named severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) which is reported to be the seventh coronavirus to infect humans. ... ...

    Abstract Coronavirus Disease 2019 (COVID-19) manifests as extreme acute respiratory conditions caused by a novel beta coronavirus named severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) which is reported to be the seventh coronavirus to infect humans. Like other SARS-CoVs it has a large positive-stranded RNA genome. But, specific furin site in the spike protein, mutation prone and phylogenetically mess open reading frame1ab (Orf1ab) separates SARS-CoV-2 from other RNA viruses. Since the outbreak (February-March 2020), researchers, scientists, and medical professionals are inspecting all possible facts and aspects including its replication, detection, and prevention strategies. This led to the prompt identification of its basic biology, genome characterization, structural and expression based functional information of proteins, and utilization of this information in optimizing strategies to prevent its spread. This review summarizes the recent updates on the basic molecular biology of SARS-CoV-2 and prevention strategies undertaken worldwide to tackle COVID-19. This recent information can be implemented for the development and designing of therapeutics against SARS-CoV-2.
    Sprache Englisch
    Erscheinungsdatum 2021-04-01
    Erscheinungsland United States
    Dokumenttyp Journal Article ; Review
    ISSN 2452-0144
    ISSN 2452-0144
    DOI 10.1016/j.genrep.2021.101122
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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  5. Artikel: Antimicrobial Activity of Endophytic Fungi Isolated from a Traditionally Important Plant of NE India-Litsea chinensis Lam

    Bhuyan, Barbi / Senapati, Pabanita / Akhtar, Suraiya / Ahmed, Raja / Tayung, Kumanand / Laskar, Raflul Amin

    Annals of biology

    2023  Band 39, Heft 1, Seite(n) 1

    Dokumenttyp Artikel
    ZDB-ID 15373-4
    ISSN 0970-0153
    Datenquelle Current Contents Ernährung, Umwelt, Agrar

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  6. Artikel: Genome-wide detection and classification of terpene synthase genes in Aquilaria agallochum

    Das, Ankur / Begum, Khaleda / Akhtar, Suraiya / Ahmed, Raja / Kulkarni, Ram / Banu, Sofia

    Physiology and molecular biology of plants. 2021 Aug., v. 27, no. 8

    2021  

    Abstract: Agarwood, one of the precious woods in the globe, is produced by Aquilaria plant species during an upshot of wounding and infection. Produced as a defence response, the dark, fragrant resin gets secreted in the plant’s duramen, which is impregnated with ... ...

    Abstract Agarwood, one of the precious woods in the globe, is produced by Aquilaria plant species during an upshot of wounding and infection. Produced as a defence response, the dark, fragrant resin gets secreted in the plant’s duramen, which is impregnated with fragrant molecules with the due course. Agarwood has gained worldwide popularity due to its high aromatic oil, fragrance, and pharmaceutical value, which makes it highly solicited by numerous industries. Predominant chemical constituents of agarwood, sesquiterpenoids, and 2-(2-phenylethyl) chromones have been scrutinized to comprehend the scientific nature of the fragrant wood and develop novel products. However, the genes involved in the biosynthesis of these aromatic compounds are still not comprehensively studied in Aquilaria. In this study, publicly available genomic and transcriptomics data of Aquilaria agallochum were integrated to identify putative functional terpene synthase genes (TPSs). The in silico study enabled us to identify ninety-six TPSs, of which thirty-nine full-length genes were systematically classified into TPS-a, TPS-b, TPS-c, TPS-e, TPS-f, and TPS-g subfamilies based on their gene structure, conserve motif, and phylogenetic comparison with TPSs from other plant species. Analysis of the cis-regulatory elements present upstream of AaTPSs revealed their association with hormone, stress and light responses. In silico expression studies detected their up-regulation in stress induced tissue. This study provides a basic understanding of terpene synthase gene repertoire in Aquilaria agallochum and unlatches opportunities for the biochemical characterization and biotechnological exploration of these genes.
    Schlagwörter Aquilaria ; biosynthesis ; computer simulation ; genes ; genomics ; molecular biology ; odors ; oils ; phylogeny ; sesquiterpenoids ; terpene synthases ; transcriptomics ; wood
    Sprache Englisch
    Erscheinungsverlauf 2021-08
    Umfang p. 1711-1729.
    Erscheinungsort Springer India
    Dokumenttyp Artikel
    ZDB-ID 2487126-6
    ISSN 0974-0430 ; 0971-5894
    ISSN (online) 0974-0430
    ISSN 0971-5894
    DOI 10.1007/s12298-021-01040-z
    Datenquelle NAL Katalog (AGRICOLA)

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  7. Artikel: Genome-wide detection and classification of terpene synthase genes in

    Das, Ankur / Begum, Khaleda / Akhtar, Suraiya / Ahmed, Raja / Kulkarni, Ram / Banu, Sofia

    Physiology and molecular biology of plants : an international journal of functional plant biology

    2021  Band 27, Heft 8, Seite(n) 1711–1729

    Abstract: Agarwood, one of the precious woods in the globe, is produced by Aquilaria plant species during an upshot of wounding and infection. Produced as a defence response, the dark, fragrant resin gets secreted in the plant's duramen, which is impregnated with ... ...

    Abstract Agarwood, one of the precious woods in the globe, is produced by Aquilaria plant species during an upshot of wounding and infection. Produced as a defence response, the dark, fragrant resin gets secreted in the plant's duramen, which is impregnated with fragrant molecules with the due course. Agarwood has gained worldwide popularity due to its high aromatic oil, fragrance, and pharmaceutical value, which makes it highly solicited by numerous industries. Predominant chemical constituents of agarwood, sesquiterpenoids, and 2-(2-phenylethyl) chromones have been scrutinized to comprehend the scientific nature of the fragrant wood and develop novel products. However, the genes involved in the biosynthesis of these aromatic compounds are still not comprehensively studied in Aquilaria. In this study, publicly available genomic and transcriptomics data of
    Supplementary information: The online version contains supplementary material available at 10.1007/s12298-021-01040-z.
    Sprache Englisch
    Erscheinungsdatum 2021-08-05
    Erscheinungsland India
    Dokumenttyp Journal Article
    ZDB-ID 2487126-6
    ISSN 0974-0430 ; 0971-5894
    ISSN (online) 0974-0430
    ISSN 0971-5894
    DOI 10.1007/s12298-021-01040-z
    Datenquelle MEDical Literature Analysis and Retrieval System OnLINE

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