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  1. Article ; Online: Potential application of melatonin in reducing boron toxicity in rice seedlings through improved growth, cell wall composition, proline, and defense mechanisms.

    Li, Xinyu / Kamran, Muhammad / Saleem, Muhammad Hamzah / Al-Ghamdi, Abdullah Ahmed / Al-Hemaid, Fahad M / Elshikh, Mohamed S / Zhao, Shaopeng / Riaz, Muhammad

    Chemosphere

    2023  Volume 335, Page(s) 139068

    Abstract: Melatonin (MT) has been demonstrated to provide defense against both biotic and abiotic stressors. Boron toxicity (BT) can significantly limit the growth and production of plants. However, few studies have been conducted on whether MT is effective in ... ...

    Abstract Melatonin (MT) has been demonstrated to provide defense against both biotic and abiotic stressors. Boron toxicity (BT) can significantly limit the growth and production of plants. However, few studies have been conducted on whether MT is effective in attenuating B toxicity in different plants. In order to evaluate the efficacy of exogenous MT treatment in reducing the negative impact of BT on rice seedlings, this study examined the influence of MT on growth, antioxidant capacity, cell wall composition, and proline metabolism in rice seedlings under hydroponics. Four treatments were established: MT (50 μM), MT + BT (50 μM MT + 800 μM B), BT (800 μM), and CK (control) in a completely randomized design. The results indicate that BT had a significant detrimental effect on the shoot length, root length, and root and shoot fresh weights of rice seedlings by 11.96%, 27.77%, 25.69%, and 18.67%, respectively as compared to the control treatment. However, exogenous MT application increased these parameters and reduced B accumulation in aboveground parts (14.05%) of the plant. Exogenous MT also increased the endogenous melatonin content and antioxidant enzyme activities (64.45%, 71.61%, 237.64%, and 55.42% increase in superoxide dismutase, ascorbate peroxidase, and peroxidase activities, respectively), while decreasing reactive oxygen species levels and oxidized forms of glutathione and ascorbic acid. Additionally, MT enhanced the biosynthesis of proline by decreasing proline dehydrogenase (ProDH) and increasing the GSH (glutathione) and ASA (ascorbic acid) contents. Exogenous MT also increased cell wall components that can increase B adsorption to the cell wall. Overall, these findings suggest that MT application can be a potential solution for strengthening the stress tolerance of rice seedlings, particularly under conditions of B toxicity. In regions where soil contains high levels of boron, the use of MT could enhance rice crop yields and quality.
    MeSH term(s) Antioxidants/pharmacology ; Antioxidants/metabolism ; Melatonin/pharmacology ; Melatonin/metabolism ; Seedlings/metabolism ; Oryza/metabolism ; Boron/toxicity ; Boron/metabolism ; Proline/metabolism ; Ascorbic Acid/metabolism ; Glutathione/metabolism ; Cell Wall/metabolism ; Defense Mechanisms ; Oxidative Stress
    Chemical Substances Antioxidants ; Melatonin (JL5DK93RCL) ; Boron (N9E3X5056Q) ; Proline (9DLQ4CIU6V) ; Ascorbic Acid (PQ6CK8PD0R) ; Glutathione (GAN16C9B8O)
    Language English
    Publishing date 2023-05-29
    Publishing country England
    Document type Journal Article
    ZDB-ID 120089-6
    ISSN 1879-1298 ; 0045-6535 ; 0366-7111
    ISSN (online) 1879-1298
    ISSN 0045-6535 ; 0366-7111
    DOI 10.1016/j.chemosphere.2023.139068
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: Potential application of melatonin in reducing boron toxicity in rice seedlings through improved growth, cell wall composition, proline, and defense mechanisms

    Li, Xinyu / Kāmrān, Muḥammad / Saleem, Muhammad Hamzah / Al-Ghamdi, Abdullah Ahmed / Al-Hemaid, Fahad M. / Elshikh, Mohamed S. / Zhao, Shaopeng / Riaz, Muhammad

    Chemosphere. 2023 Sept., v. 335 p.139068-

    2023  

    Abstract: Melatonin (MT) has been demonstrated to provide defense against both biotic and abiotic stressors. Boron toxicity (BT) can significantly limit the growth and production of plants. However, few studies have been conducted on whether MT is effective in ... ...

    Abstract Melatonin (MT) has been demonstrated to provide defense against both biotic and abiotic stressors. Boron toxicity (BT) can significantly limit the growth and production of plants. However, few studies have been conducted on whether MT is effective in attenuating B toxicity in different plants. In order to evaluate the efficacy of exogenous MT treatment in reducing the negative impact of BT on rice seedlings, this study examined the influence of MT on growth, antioxidant capacity, cell wall composition, and proline metabolism in rice seedlings under hydroponics. Four treatments were established: MT (50 μM), MT + BT (50 μM MT + 800 μM B), BT (800 μM), and CK (control) in a completely randomized design. The results indicate that BT had a significant detrimental effect on the shoot length, root length, and root and shoot fresh weights of rice seedlings by 11.96%, 27.77%, 25.69%, and 18.67%, respectively as compared to the control treatment. However, exogenous MT application increased these parameters and reduced B accumulation in aboveground parts (14.05%) of the plant. Exogenous MT also increased the endogenous melatonin content and antioxidant enzyme activities (64.45%, 71.61%, 237.64%, and 55.42% increase in superoxide dismutase, ascorbate peroxidase, and peroxidase activities, respectively), while decreasing reactive oxygen species levels and oxidized forms of glutathione and ascorbic acid. Additionally, MT enhanced the biosynthesis of proline by decreasing proline dehydrogenase (ProDH) and increasing the GSH (glutathione) and ASA (ascorbic acid) contents. Exogenous MT also increased cell wall components that can increase B adsorption to the cell wall. Overall, these findings suggest that MT application can be a potential solution for strengthening the stress tolerance of rice seedlings, particularly under conditions of B toxicity. In regions where soil contains high levels of boron, the use of MT could enhance rice crop yields and quality.
    Keywords abiotic stress ; adsorption ; antioxidant activity ; antioxidant enzymes ; ascorbate peroxidase ; ascorbic acid ; biosynthesis ; boron ; cell wall components ; cell walls ; glutathione ; hydroponics ; melatonin ; oxidation ; peroxidase ; proline ; reactive oxygen species ; rice ; soil ; stress tolerance ; superoxide dismutase ; toxicity ; Boron toxicity ; Rice plants ; Antioxidant capacity ; Proline metabolism ; Cell wall
    Language English
    Dates of publication 2023-09
    Publishing place Elsevier Ltd
    Document type Article ; Online
    Note Pre-press version
    ZDB-ID 120089-6
    ISSN 1879-1298 ; 0045-6535 ; 0366-7111
    ISSN (online) 1879-1298
    ISSN 0045-6535 ; 0366-7111
    DOI 10.1016/j.chemosphere.2023.139068
    Database NAL-Catalogue (AGRICOLA)

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  3. Article: Comparative plastome data analysis of Dendrosicyos socotranus and Corallocarpus boehmii.

    Ali, Mohammad Ajmal / Al-Anazi, Khalid Mashay / Al-Hemaid, Fahad / Ansari, Waquar Akhtar / Lee, Joongku

    Bioinformation

    2021  Volume 17, Issue 7, Page(s) 662–666

    Abstract: Comparison of the Dendrosicyos socotranus and Corallocarpus boehmii (tribe Coniandreae, family Cucurbitaceae) plastome data was of interest. Data on RNA, tRNA, GC%, plastome size, CDS and pseudogene were tabulated for the two species. The total length of ...

    Abstract Comparison of the Dendrosicyos socotranus and Corallocarpus boehmii (tribe Coniandreae, family Cucurbitaceae) plastome data was of interest. Data on RNA, tRNA, GC%, plastome size, CDS and pseudogene were tabulated for the two species. The total length of 1,57,380 bp and 1,58,744 bp which includes LSC, SSC, IRa, and IRb, while their GC content was 37.1% and 37% respectively. The variation in the length of genes e.g. ndhD, ndhI, rpl22, rpoC2, rps16, rps19, rps8, ycf1and ycf2 noted. Data help to document the genetic differences between usual (climber) with those of tree cucurbits.
    Language English
    Publishing date 2021-07-31
    Publishing country Singapore
    Document type Journal Article
    ZDB-ID 2203786-X
    ISSN 0973-2063
    ISSN 0973-2063
    DOI 10.6026/97320630017662
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article: In silico

    Bahadur Gurung, Arun / Ajmal Ali, Mohammad / Al-Hemaid, Fahad / El-Zaidy, Mohamed / Lee, Joongku

    Saudi journal of biological sciences

    2021  Volume 29, Issue 1, Page(s) 65–74

    Abstract: Boesenbergia ... ...

    Abstract Boesenbergia rotunda
    Language English
    Publishing date 2021-11-26
    Publishing country Saudi Arabia
    Document type Journal Article
    ZDB-ID 2515206-3
    ISSN 2213-7106 ; 1319-562X
    ISSN (online) 2213-7106
    ISSN 1319-562X
    DOI 10.1016/j.sjbs.2021.11.053
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Artesunate induces substantial topological alterations in the SARS-CoV-2 Nsp1 protein structure.

    Gurung, Arun Bahadur / Ali, Mohammad Ajmal / Lee, Joongku / Farah, Mohammad Abul / Al-Anazi, Khalid Mashay / Al-Hemaid, Fahad

    Journal of King Saud University. Science

    2022  Volume 34, Issue 2, Page(s) 101810

    Abstract: The need for novel antiviral treatments for coronavirus disease 2019 (COVID-19) continues with the widespread infections and fatalities throughout the world. Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative agent of the deadly ... ...

    Abstract The need for novel antiviral treatments for coronavirus disease 2019 (COVID-19) continues with the widespread infections and fatalities throughout the world. Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative agent of the deadly disease, relies on the non-structural protein Nsp1 for multiplication within the host cells and disarms the host immune defences by various mechanisms. Herein, we investigated the potential of artemisinin and its derivatives as possible inhibitors of SARS-CoV-2 Nsp1 through various computational approaches. Molecular docking results show that artemisinin (CID68827) binds to Nsp1 with a binding energy of -6.53 kcal/mol and an inhibition constant of 16.43 µM. The top 3 derivatives Artesunate (CID6917864), Artemiside (CID53323323) and Artemisone (CID11531457) show binding energies of -7.92 kcal/mol, -7.46 kcal/mol and -7.36 kcal/mol respectively. Hydrophobic interactions and hydrogen bonding with Val10, Arg11, and Gln50 helped to stabilize the protein-ligand complexes. The pharmacokinetic properties of these molecules show acceptable properties. The geometric parameters derived from large-scale MD simulation studies provided insights into the changes in the structural topology of Nsp1 upon binding of Artesunate. Thus, the findings of our research highlight the importance of artemisinin and its derivatives in the development of drugs to inhibit SARS-CoV-2 Nsp1 protein.
    Language English
    Publishing date 2022-01-03
    Publishing country Saudi Arabia
    Document type Journal Article
    ISSN 2213-686X
    ISSN (online) 2213-686X
    DOI 10.1016/j.jksus.2021.101810
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article: Electrochemical sensor based on cerium niobium oxide nanoparticles modified electrode for sensing of environmental toxicity in water samples

    Manjula, Natesan / Pulikkutty, Subramaniyan / Chen, Tse-Wei / Chen, Shen-Ming / Fan, Chi Hsuan / Ali, M. Ajmal / Al-Hemaid, Fahad M.

    Colloids and surfaces. 2022 Mar. 20, v. 637

    2022  

    Abstract: Water is one of the most necessities for life on the planet. Nowadays, the scarcity of clean water is a major concern, and it is predicted to worsen in the future as a result of industrial globalization and population growth. Among the various procedures ...

    Abstract Water is one of the most necessities for life on the planet. Nowadays, the scarcity of clean water is a major concern, and it is predicted to worsen in the future as a result of industrial globalization and population growth. Among the various procedures being suggested and/or implemented for water analysis that are simple, clean, and inexpensive, semiconductor-mediated electro analytical processing has gotten a lot of attention. On this concern, here we report a facile synthesis, characterization, and electrochemical sensors potential of a rare earth metal of cerium niobium oxide nanoparticles (CNO NPs). The low-temperature hydrothermal method was used to synthesize the catalyst, which was then characterized by XRD, XPS, TEM, and EDS. To explore the electrocatalytic activity of CNO NPs, it was employed as an electrocatalyst to monitor the environmental toxicity 4-Nitrophenol by EIS, CV, and DPV. The effects of different experimental parameters, pH, and scan rate have been optimized for the electrochemical oxidation of 4-Nitrophenol. The linear relationship between the peak current and various concentrations of 4-Nitrophenol was reported to be the over range of 0.01–192.01 µM, with a remarkable detection limit of 0.042 µM. The CNO NPs modified GCE for 4-Nitrophenol sensor exhibits high reproducibility, repeatability, and stability. The results demonstrate the sensing performance and prospective applications of CNO NPs for the electrochemical detection of 4-Nitrophenol in real-time detection is applicable with acceptable recovery results.
    Keywords catalysts ; cerium ; detection limit ; ecotoxicology ; electrochemistry ; electrodes ; globalization ; hot water treatment ; niobium ; oxidation ; p-nitrophenol ; pH ; population growth ; sensors (equipment) ; water analysis
    Language English
    Dates of publication 2022-0320
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 1500517-3
    ISSN 0927-7757
    ISSN 0927-7757
    DOI 10.1016/j.colsurfa.2022.128277
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  7. Article ; Online: Morphological, pathogenic and genetic diversity in Diplodia seriata associated with black rot canker of apple in India.

    Bhat, Arif Hussain / Shah, M D / Padder, B A / Shah, Zahoor Ahmad / Dar, Eajaz Ahmad / Fayaz, U / Nain, Manjeet Singh / Ali, M Ajmal / Al-Hemaid, Fahad M / Stępień, Piotr / Ahmed, Mohamed A A / Salama, Ehab A A

    Scientific reports

    2023  Volume 13, Issue 1, Page(s) 15682

    Abstract: Apple cankers are extremely destructive diseases threatening the global apple industry through direct and indirect losses. The population structure of the pathogens is of paramount significance for the development of efficient management strategies. ... ...

    Abstract Apple cankers are extremely destructive diseases threatening the global apple industry through direct and indirect losses. The population structure of the pathogens is of paramount significance for the development of efficient management strategies. Therefore, phenotypic, pathogenic, and genetic diversity of Diplodia seriata causing black rot canker of apple was investigated in this study. All the isolates were included for investigating the in vitro mycelial growth, conidial dimensions, and pathogenic variability on two-year-old potted apple seedlings. The ISSR approach was used to investigate the molecular diversity of D. seriata. Mycelial growth rates were found to vary significantly amongst the isolates; however, there were no major variations seen between the different geographical groupings of isolates. Pathogenicity tests revealed variations in the size of cankers among the isolates indicating the presence of virulence variability. The isolates were segregated into three virulence groups based on canker length. The Bayesian analyses of ISSR data divided the isolates into two genetic clusters. The genetic clustering of the isolates revealed no relationship with geographical origin of the isolates. Furthermore, no direct relationship of genetic clustering was observed with morphological or pathogenic variability. The ISSR primers revealed very high level of variability in D. seriata; however, no distinct populations of the pathogen existed which is an indication of high level of gene flow between the diverse geographical populations. According to our knowledge, this is the first thorough investigation on the diversity of D. seriata associated with apple black rot canker in India.
    MeSH term(s) Animals ; Malus ; Bayes Theorem ; India ; Platyhelminths ; Genetic Variation
    Language English
    Publishing date 2023-09-21
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-023-42534-y
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article: Identification of SARS-CoV-2 inhibitors from extracts of

    Bahadur Gurung, Arun / Ajmal Ali, Mohammad / Lee, Joongku / Abul Farah, Mohammad / Mashay Al-Anazi, Khalid / Al-Hemaid, Fahad

    Saudi journal of biological sciences

    2021  Volume 28, Issue 12, Page(s) 7517–7527

    Abstract: Houttuynia ... ...

    Abstract Houttuynia cordata
    Language English
    Publishing date 2021-09-06
    Publishing country Saudi Arabia
    Document type Journal Article
    ZDB-ID 2515206-3
    ISSN 2213-7106 ; 1319-562X
    ISSN (online) 2213-7106
    ISSN 1319-562X
    DOI 10.1016/j.sjbs.2021.08.100
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  9. Article ; Online: Structural and functional insights into the major mutations of SARS-CoV-2 Spike RBD and its interaction with human ACE2 receptor.

    Gurung, Arun Bahadur / Ali, Mohammad Ajmal / Lee, Joongku / Farah, Mohammad Abul / Al-Anazi, Khalid Mashay / Al-Hemaid, Fahad / Sami, Hiba

    Journal of King Saud University. Science

    2021  Volume 34, Issue 2, Page(s) 101773

    Abstract: Coronavirus Disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has rapidly spread around the world jeopardizing the global economy and health. The rapid proliferation and infectivity of the virus can be ... ...

    Abstract Coronavirus Disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has rapidly spread around the world jeopardizing the global economy and health. The rapid proliferation and infectivity of the virus can be attributed to many accumulating mutations in the spike protein leading to continuous generation of variants. The spike protein is a glycoprotein that recognizes and binds to cell surface receptor known as angiotensin-converting enzyme 2 (ACE2) leading to the fusion of the viral and host cell membranes and entry into the host cells. These circulating variants in the population have greatly impacted the virulence, transmissibility, and immunological evasion of the host. The present study is aimed at understanding the impact of the major mutations (L452R, T478K and N501Y) in the receptor-binding domain (RBD) of spike protein and their consequences on the binding affinity to human ACE2 through protein-protein docking and molecular dynamics simulation approaches. Protein-protein docking and Molecular mechanics with generalised Born and surface area solvation (MM/GBSA) binding free energy analysis reveal that the spike mutants-L452R, T478K and N501Y have a higher binding affinity to human ACE2 as compared to the native spike protein. The increase in the number of interface residues, interface area and intermolecular forces such as hydrogen bonds, salt bridges and non-bonded contacts corroborated with the increase in the binding affinity of the spike mutants to ACE2. Further, 75 ns all-atom molecular dynamics simulation investigations show variations in the geometric properties such as root mean square deviation (RMSD), radius of gyration (Rg), total solvent accessible surface area (SASA) and number of hydrogen bonds (NHBs) in the mutant spike:ACE2 complexes with respect to the native spike:ACE2 complex. Therefore, the findings of this study unravel plausible molecular mechanisms of increase in binding affinity of spike mutants (L452R, T478K and N501Y) to human ACE2 leading to higher virulence and infectivity of emerging SARS-CoV-2 variants. The study will further aid in designing novel therapeutics targeting the interface residues between spike protein and ACE2 receptor.
    Language English
    Publishing date 2021-12-20
    Publishing country Saudi Arabia
    Document type Journal Article
    ISSN 2213-686X
    ISSN (online) 2213-686X
    DOI 10.1016/j.jksus.2021.101773
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  10. Article: Protective Effect of

    Al-Anazi, Khalid Mashai / Al-Mareed, Ali Abdullah / Farah, Mohammed Abul / Ali, M Ajmal / Hailan, Waleed A Q / Al-Hemaid, Fahad M

    Evidence-based complementary and alternative medicine : eCAM

    2021  Volume 2021, Page(s) 8875238

    Abstract: Despite the commercial value of potassium bromate ( ... ...

    Abstract Despite the commercial value of potassium bromate (KBrO
    Language English
    Publishing date 2021-01-19
    Publishing country United States
    Document type Journal Article
    ZDB-ID 2171158-6
    ISSN 1741-4288 ; 1741-427X
    ISSN (online) 1741-4288
    ISSN 1741-427X
    DOI 10.1155/2021/8875238
    Database MEDical Literature Analysis and Retrieval System OnLINE

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