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  1. Article ; Online: RNA Polymerase II Transcription in Pneumocystis

    Diego A. Rojas / Fabiola Urbina / Aldo Solari / Edio Maldonado

    International Journal of Molecular Sciences, Vol 23, Iss 6865, p

    TFIIB from Pneumocystis carinii Can Replace the Transcriptional Functions of Fission Yeast Schizosaccharomyces pombe TFIIB In Vivo and In Vitro

    2022  Volume 6865

    Abstract: The Pneumocystis genus is an opportunistic fungal pathogen that infects patients with AIDS and immunocompromised individuals. The study of this fungus has been hampered due to the inability to grow it in a (defined media/pure) culture. However, the use ... ...

    Abstract The Pneumocystis genus is an opportunistic fungal pathogen that infects patients with AIDS and immunocompromised individuals. The study of this fungus has been hampered due to the inability to grow it in a (defined media/pure) culture. However, the use of modern molecular techniques and genomic analysis has helped researchers to understand its complex cell biology. The transcriptional process in the Pneumocystis genus has not been studied yet, although it is assumed that it has conventional transcriptional machinery. In this work, we have characterized the function of the RNA polymerase II (RNAPII) general transcription factor TFIIB from Pneumocystis carinii using the phylogenetically related biological model Schizosaccharomyces pombe . The results of this work show that Pneumocystis carinii TFIIB is able to replace the essential function of S. pombe TFIIB both in in vivo and in vitro assays. The S. pombe strain harboring the P carinii TFIIB grew slower than the parental wild-type S. pombe strain in complete media and in minimal media. The S. pombe cells carrying out the P. carinii TFIIB are larger than the wild-type cells, indicating that the TFIIB gene replacement confers a phenotype, most likely due to defects in transcription. P. carinii TFIIB forms very weak complexes with S. pombe TATA-binding protein on a TATA box promoter but it is able to form stable complexes in vitro when S. pombe TFIIF/RNAPII are added. P. carinii TFIIB can also replace the transcriptional function of S. pombe TFIIB in an in vitro assay. The transcription start sites (TSS) of the endogenous adh gene do not change when P. carinii TFIIB replaces S. pombe TFIIB, and neither does the TSS of the nmt1 gene, although this last gene is poorly transcribed in vivo in the presence of P. carinii TFIIB. Since transcription by RNA polymerase II in Pneumocystis is poorly understood, the results described in this study are promising and indicate that TFIIB from P. carinii can replace the transcriptional functions of S. pombe TFIIB, although the ...
    Keywords Pneumocystis carinii ; transcription ; general transcription factors (GTFs) ; RNA polymerase II ; Schizosaccharomyces pombe ; Biology (General) ; QH301-705.5 ; Chemistry ; QD1-999
    Subject code 570
    Language English
    Publishing date 2022-06-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: Vaccine Design against Chagas Disease Focused on the Use of Nucleic Acids

    Edio Maldonado / Sebastian Morales-Pison / Fabiola Urbina / Aldo Solari

    Vaccines, Vol 10, Iss 587, p

    2022  Volume 587

    Abstract: Chagas disease is caused by the protozoan Trypanosoma cruzi and is endemic to Central and South America. However, it has spread around the world and affects several million people. Treatment with currently available drugs cause several side effects and ... ...

    Abstract Chagas disease is caused by the protozoan Trypanosoma cruzi and is endemic to Central and South America. However, it has spread around the world and affects several million people. Treatment with currently available drugs cause several side effects and require long treatment times to eliminate the parasite, however, this does not improve the chronic effects of the disease such as cardiomyopathy. A therapeutic vaccine for Chagas disease may be able to prevent the disease and improve the chronic effects such as cardiomyopathy. This vaccine would be beneficial for both infected people and those which are at risk in endemic and non-endemic areas. In this article, we will review the surface antigens of T. cruzi , in order to choose those that are most antigenic and least variable, to design effective vaccines against the etiological agent of Chagas disease. Also, we discuss aspects of the design of nucleic acid-based vaccines, which have been developed and proven to be effective against the SARS-CoV-2 virus. The role of co-adjuvants and delivery carriers is also discussed. We present an example of a chimeric trivalent vaccine, based on experimental work, which can be used to design a vaccine against Chagas disease.
    Keywords DNA vaccine ; RNA vaccine ; vaccine delivery ; immune responses ; pandemic ; Medicine ; R
    Subject code 610
    Language English
    Publishing date 2022-04-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: Natural Trypanosoma cruzi Infection and Climatic Season Influence the Developmental Capacity in Field-Caught Mepraia spinolai Nymphs

    Juan Botzotz / Gabriel Méndez-Valdés / Sylvia Ortiz / Angélica López / Carezza Botto-Mahan / Aldo Solari

    Insects, Vol 14, Iss 272, p

    2023  Volume 272

    Abstract: In this study, we evaluated the effect of the climatic season and infection by Trypanosoma cruzi , etiological agent of Chagas disease, on the molting capacity of the triatomine vector Mepraia spinolai endemic to Chile. We used wild-caught first-to- ... ...

    Abstract In this study, we evaluated the effect of the climatic season and infection by Trypanosoma cruzi , etiological agent of Chagas disease, on the molting capacity of the triatomine vector Mepraia spinolai endemic to Chile. We used wild-caught first-to-fourth instar nymphs during cooling (fall and winter) and warming (spring) periods. After capturing, nymphs were fed at the laboratory, and maintained under optimal rearing conditions. Feeding was repeated 40 days later. We followed-up the molting events on 709 nymphs, recording one, two or the absence of molts after two feeding opportunities. Within the same climatic period, only infected second- and fourth-instar nymphs from the warming period showed a larger proportion of double molting compared to uninfected nymphs. Regarding the climatic period, infected and uninfected first- and fourth-instar nymphs exhibited a larger proportion of double molting in the warming and cooling periods, respectively. The pattern of non-molting nymph occurrence suggests they probably reach diapause by environmental stochasticity. The effect of the climatic period and T. cruzi infection on the development of M. spinolai is an instar-dependent phenomenon, highlighting the occurrence of finely synchronized processes at different moments of the life cycle of such an hemimetabolous insect as triatomines.
    Keywords Mepraia spinolai ; Trypanosoma cruzi ; instar-dependent molting ; sylvatic kissing bug ; Chagas disease vector ; molting efficiency ; Science ; Q
    Language English
    Publishing date 2023-03-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: Seeing inferences

    Ana Martín-Salguero / Carlo Reverberi / Aldo Solari / Luca Filippin / Christophe Pallier / Luca L. Bonatti

    Scientific Reports, Vol 13, Iss 1, Pp 1-

    brain dynamics and oculomotor signatures of non-verbal deduction

    2023  Volume 11

    Abstract: Abstract We often express our thoughts through words, but thinking goes well beyond language. Here we focus on an elementary but basic thinking process, disjunction elimination, elicited by elementary visual scenes deprived of linguistic content, ... ...

    Abstract Abstract We often express our thoughts through words, but thinking goes well beyond language. Here we focus on an elementary but basic thinking process, disjunction elimination, elicited by elementary visual scenes deprived of linguistic content, describing its neural and oculomotor correlates. We track two main components of a nonverbal deductive process: the construction of a logical representation (A or B), and its simplification by deduction (not A, therefore B). We identify the network active in the two phases and show that in the latter, but not in the former, it overlaps with areas known to respond to verbal logical reasoning. Oculomotor markers consistently differentiate logical processing induced by the construction of a representation, its simplification by deductive inference, and its maintenance when inferences cannot be drawn. Our results reveal how integrative logical processes incorporate novel experience in the flow of thoughts induced by visual scenes.
    Keywords Medicine ; R ; Science ; Q
    Subject code 160
    Language English
    Publishing date 2023-02-01T00:00:00Z
    Publisher Nature Portfolio
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: PAST AND PRESENT OF CHAGAS DISEASE IN NORTHERN CHILE PASADO Y PRESENTE DE LA ENFERMEDAD DE CHAGAS EN EL NORTE DE CHILE

    Aldo Solari

    Chungará (Arica) - Revista de Antropología Chilena, Vol 43, Iss 2, Pp 315-

    2011  Volume 322

    Abstract: Contemporary understandings of the epidemiology of Chagas disease as well as it’s clinical features, together with knowledge of the insect vectors and genotypes of the causal agent Trypanosoma cruzi are important pieces of information for comparisons ... ...

    Abstract Contemporary understandings of the epidemiology of Chagas disease as well as it’s clinical features, together with knowledge of the insect vectors and genotypes of the causal agent Trypanosoma cruzi are important pieces of information for comparisons with cases in the past. Evidence indicates that 4,000 years ago in northern Chile cases displaying digestive symptoms or ‘megacolon’ were frequent. Recent information on the dispersion of the domestic insect vector Triatoma infestans allows us to conclude that in the past only the wild Mepraia gajardoi insect vector transmitted Trypanosoma cruzi in its native area. This information together with current knowledge about Trypanosoma cruzi circulating in the area and transmitted by Mepraia gajardoi will be important to establish possible host-parasite association with Chagas disease pathology. El conocimiento de la epidemiología de la enfermedad de Chagas en el norte de Chile en nuestros días tales como las características clínicas, los insectos vectores del parásito hasta los genotipos del agente causal Trypanosoma cruzi son importantes para contrastar la situación con el pasado. La evidencia nos indica que hace 4.000 años en esta zona endémica hubo casos clínicos frecuentes con síntomas digestivos de la enfermedad de Chagas o megacolon. Los datos recientes sobre dispersión del insecto vector doméstico Triatoma infestans permiten concluir que en el pasado sólo el vector nativo y silvestre Mepraia gajardoi transmitía Trypanosoma cruzi. Esa información y el conocimiento actual de los genotipos de T. cruzi circulando en el área y transmitidos por M. gajardoi serán importantes para establecer posibles asociaciones huésped-parásito con la patología de la enfermedad de Chagas.
    Keywords Chagas ; genotipos T. cruzi ; insectos vectores ; T. cruzi genotypes ; insect vectors ; Anthropology ; GN1-890 ; Geography. Anthropology. Recreation ; G ; DOAJ:Anthropology ; DOAJ:Social Sciences
    Language English
    Publishing date 2011-12-01T00:00:00Z
    Publisher Universidad de Tarapacá Facultad de Ciencias Sociales y Jurídicas
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article ; Online: Algunas reflexiones sobre el problema de los valores, la objetividad y el compromiso en las ciencias sociales

    Aldo Solari

    Revista Colombiana de Sociología, Vol 34, Iss 2, Pp 181-

    2011  Volume 199

    Keywords Sociology (General) ; HM401-1281 ; Social Sciences ; H
    Language Spanish
    Publishing date 2011-10-01T00:00:00Z
    Publisher Universidad Nacional de Colombia
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  7. Article ; Online: T. cruzi DNA polymerase beta (Tcpolβ) is phosphorylated in vitro by CK1, CK2 and TcAUK1 leading to the potentiation of its DNA synthesis activity.

    Edio Maldonado / Diego A Rojas / Fabiola Urbina / Aldo Solari

    PLoS Neglected Tropical Diseases, Vol 15, Iss 7, p e

    2021  Volume 0009588

    Abstract: The unicellular protozoan Trypanosoma cruzi is the causing agent of Chagas disease which affects several millions of people around the world. The components of the cell signaling pathways in this parasite have not been well studied yet, although its ... ...

    Abstract The unicellular protozoan Trypanosoma cruzi is the causing agent of Chagas disease which affects several millions of people around the world. The components of the cell signaling pathways in this parasite have not been well studied yet, although its genome can encode several components able to transduce the signals, such as protein kinases and phosphatases. In a previous work we have found that DNA polymerase β (Tcpolβ) can be phosphorylated in vivo and this modification activates the synthesis activity of the enzyme. Tcpolβ is kinetoplast-located and is a key enzyme in the DNA base excision repair (BER) system. The polypeptide possesses several consensus phosphorylation sites for several protein kinases, however, a direct phosphorylation of those sites by specific kinases has not been reported yet. Tcpolβ has consensus phosphorylation sites for casein kinase 1 (CK1), casein kinase 2 (CK2) and aurora kinase (AUK). Genes encoding orthologues of those kinases exist in T. cruzi and we were able to identify the genes and to express them to investigate whether or no Tcpolβ could be a substrate for in vitro phosphorylation by those kinases. Both CK1 and TcAUK1 have auto-phosphorylation activities and they are able to phosphorylate Tcpolβ. CK2 cannot perform auto-phosphorylation of its subunits, however, it was able to phosphorylate Tcpolβ. Pharmacological inhibitors used to inhibit the homologous mammalian kinases can also inhibit the activity of T. cruzi kinases, although, at higher concentrations. The phosphorylation events carried out by those kinases can potentiate the DNA polymerase activity of Tcpolβ and it is discussed the role of the phosphorylation on the DNA polymerase and lyase activities of Tcpolβ. Taken altogether, indicates that CK1, CK2 and TcAUK1 can play an in vivo role regulating the function of Tcpolβ.
    Keywords Arctic medicine. Tropical medicine ; RC955-962 ; Public aspects of medicine ; RA1-1270
    Subject code 572
    Language English
    Publishing date 2021-07-01T00:00:00Z
    Publisher Public Library of Science (PLoS)
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  8. Article ; Online: The Product of the Fission Yeast fhl1 Gene Binds to the HomolE Box and Activates In Vitro Transcription of Ribosomal Protein Genes

    Edio Maldonado / Sebastian Morales-Pison / Fabiola Urbina / Claudia Arias / Christian Castillo / Lilian Jara / Aldo Solari

    International Journal of Molecular Sciences, Vol 24, Iss 9472, p

    2023  Volume 9472

    Abstract: Fission yeast ribosomal protein genes (RPGs) contain a HomolD box as a core promoter element required for transcription. Some of the RPGs also contain a consensus sequence named HomolE, located upstream of the HomolD box. The HomolE box acts as an ... ...

    Abstract Fission yeast ribosomal protein genes (RPGs) contain a HomolD box as a core promoter element required for transcription. Some of the RPGs also contain a consensus sequence named HomolE, located upstream of the HomolD box. The HomolE box acts as an upstream activating sequence (UAS), and it is able to activate transcription in RPG promoters containing a HomolD box. In this work, we identified a HomolE-binding protein (HEBP) as a polypeptide of 100 kDa, which was able to bind to the HomolE box in a Southwestern blot assay. The features of this polypeptide were similar to the product of the fhl1 gene of fission yeast. The Fhl1 protein is the homolog of the FHL1 protein of budding yeast and possesses fork-head-associated (FHA) and fork-head (FH) domains. The product of the fhl1 gene was expressed and purified from bacteria, and it was demonstrated that is able to bind the HomolE box in an electrophoretic mobility assay (EMSA), as well as being able to activate in vitro transcription from an RPG gene promoter containing HomolE boxes upstream of the HomolD box. These results indicate that the product of the fhl1 gene of fission yeast can bind to the HomolE box, and it activates the transcription of RPGs.
    Keywords HomolE box ; Fhl1 protein ; HomolD box ; RPGs transcription ; Biology (General) ; QH301-705.5 ; Chemistry ; QD1-999
    Subject code 570
    Language English
    Publishing date 2023-05-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: Experimental evidence of effective human–AI collaboration in medical decision-making

    Carlo Reverberi / Tommaso Rigon / Aldo Solari / Cesare Hassan / Paolo Cherubini / GI Genius CADx Study Group / Andrea Cherubini

    Scientific Reports, Vol 12, Iss 1, Pp 1-

    2022  Volume 10

    Abstract: Abstract Artificial Intelligence (ai) systems are precious support for decision-making, with many applications also in the medical domain. The interaction between mds and ai enjoys a renewed interest following the increased possibilities of deep learning ...

    Abstract Abstract Artificial Intelligence (ai) systems are precious support for decision-making, with many applications also in the medical domain. The interaction between mds and ai enjoys a renewed interest following the increased possibilities of deep learning devices. However, we still have limited evidence-based knowledge of the context, design, and psychological mechanisms that craft an optimal human–ai collaboration. In this multicentric study, 21 endoscopists reviewed 504 videos of lesions prospectively acquired from real colonoscopies. They were asked to provide an optical diagnosis with and without the assistance of an ai support system. Endoscopists were influenced by ai ( $$\textsc {or}=3.05$$ O R = 3.05 ), but not erratically: they followed the ai advice more when it was correct ( $$\textsc {or}=3.48$$ O R = 3.48 ) than incorrect ( $$\textsc {or}=1.85$$ O R = 1.85 ). Endoscopists achieved this outcome through a weighted integration of their and the ai opinions, considering the case-by-case estimations of the two reliabilities. This Bayesian-like rational behavior allowed the human–ai hybrid team to outperform both agents taken alone. We discuss the features of the human–ai interaction that determined this favorable outcome.
    Keywords Medicine ; R ; Science ; Q
    Subject code 006
    Language English
    Publishing date 2022-09-01T00:00:00Z
    Publisher Nature Portfolio
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article ; Online: Trypanosomatid Infections among Vertebrates of Chile

    Juana P. Correa / Antonella Bacigalupo / Esteban Yefi-Quinteros / Gemma Rojo / Aldo Solari / Pedro E. Cattan / Carezza Botto-Mahan

    Pathogens, Vol 9, Iss 661, p

    A Systematic Review

    2020  Volume 661

    Abstract: We present a review on the natural infection by trypanosomatids of nonhuman vertebrates in Chile, aiming to synthesize and update the knowledge on the diversity of trypanosomatids infecting native and alien vertebrate species. To this end, we conducted a ...

    Abstract We present a review on the natural infection by trypanosomatids of nonhuman vertebrates in Chile, aiming to synthesize and update the knowledge on the diversity of trypanosomatids infecting native and alien vertebrate species. To this end, we conducted a systematic review of literature records published from 1900 to April 2020 on four databases, focusing on the 21 genera of trypanosomatids and Chile. The methods and findings of our review have been based on the preferred reporting items for systematic reviews and meta-analysis (prisma) checklist. We found 29,756 records but only 71 presented relevant information for this review. Overall, there are only two reported trypanosomatid genera infecting vertebrate species in Chile, the genera Trypanosoma and Leishmania . The former is mostly represented by Trypanosoma cruzi (90% of the total records) and to a much lesser extent by Trypanosoma avium , Trypanosoma humboldti , Trypanosoma lewisi , and a couple of unidentified trypanosomatids. A total of 25 mammals have been reported as being infected by T. cruzi , including 14 native and 11 alien species from Orders Artiodactyla, Carnivora, Chiroptera, Didelphimorphia, Lagomorpha, Perissodactyla, and Rodentia. Extensive screening studies using new analytical tools are necessary to grasp the whole potential diversity of trypanosomatid species infecting vertebrates in Chile.
    Keywords native mammals ; exotic mammals ; domestic mammals ; Trypanosoma cruzi ; hosts ; reservoirs ; Medicine ; R
    Subject code 590
    Language English
    Publishing date 2020-08-01T00:00:00Z
    Publisher MDPI AG
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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