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  1. Article ; Online: The tissue specific regulation of miR22 expression in the lung and brain by ribosomal protein L29.

    Ali, Mohammad Ishaque / Li, Linrui / Li, Lexing / Yao, Lun / Liu, Jie / Gu, Wei / Huang, Shuguang / Wang, Bingyu / Liu, Guoquan

    Scientific reports

    2020  Volume 10, Issue 1, Page(s) 16242

    Abstract: Endogenous miR22 is associated with a diverse range of biological processes through post-translational modification of gene expression and its deregulation results in various diseases including cancer. Its expression is usually tissue or cell-specific, ... ...

    Abstract Endogenous miR22 is associated with a diverse range of biological processes through post-translational modification of gene expression and its deregulation results in various diseases including cancer. Its expression is usually tissue or cell-specific, however, the reasons behind this tissue or cell specificity are not clearly outlined till-date. Therefore, our keen interest was to investigate the mechanisms of tissue or cell-specific expression of miR22. In the current study, miR22 expression showed a tissues-specific difference in the poly(I:C) induced inflammatory mouse lung and brain tissues. The cell-specific different expression of miR22 was also observed in inflammatory glial cells and endothelial cells. The pattern of RPL29 expression was also similar to miR22 in these tissues and cells under the same treatment. Interestingly, the knockdown of RPL29 exerted an inhibitory effect on miR22 and its known transcription factors including Fos-B and c-Fos. Fos-B and c-Fos were also differentially expressed in the two cell lines transfected with poly(I:C). The knockdown of c-Fos also exerted its negative effects on miR22 expression in both cells. These findings suggest that RPL29 might have regulatory roles on tissue or cell-specific expression of miR22 through the transcription activities of c-Fos and also possibly through Fos-B.
    MeSH term(s) Animals ; Brain/metabolism ; Cell Line ; Gene Expression Regulation ; Humans ; Lung/metabolism ; Male ; Mice ; Mice, Inbred C57BL ; MicroRNAs/metabolism ; RNA-Binding Proteins/metabolism ; Real-Time Polymerase Chain Reaction ; Ribosomal Proteins/metabolism
    Chemical Substances MicroRNAs ; Mirn22 microRNA, mouse ; RNA-Binding Proteins ; Ribosomal Proteins ; Rpl29 protein, mouse
    Language English
    Publishing date 2020-10-01
    Publishing country England
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 2615211-3
    ISSN 2045-2322 ; 2045-2322
    ISSN (online) 2045-2322
    ISSN 2045-2322
    DOI 10.1038/s41598-020-73281-z
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: A genome-wide single nucleotide polymorphism scan reveals genetic markers associated with fertility rate in Chinese Jing Hong chicken.

    Azmal, Syed Ali / Nan, Jiuhong / Bhuiyan, Ali Akbar / Elokil, Abdelmotaleb Ahmed / Ali, Mohammad Ishaque / Adetula, Adeyinka Abiola / Ma, Shuai / Sun, Chenghao / Han, Zhongdong / Yuan, Jingwei / Li, Shijun

    Poultry science

    2020  Volume 99, Issue 6, Page(s) 2873–2887

    Abstract: The function of the sperm storage tubules is directly correlated with the fertility of laying hens. However, little is known about the molecular mechanisms regulating the fertility traits in chicken. To identify genetic markers associated with ... ...

    Abstract The function of the sperm storage tubules is directly correlated with the fertility of laying hens. However, little is known about the molecular mechanisms regulating the fertility traits in chicken. To identify genetic markers associated with reproductive traits, we calculated fertility rate at 61 to 69 wk (51 D) of Jing Hong chickens parent generation as the phenotype and the genotype were detected by the chicken 600K Affymetrix Axiom High Density single nucleotide polymorphisms (SNP)-array. The genome-wide association study using 190 Jing Hong hens showed that the 20 SNP in chromosomes 3 and 13 were significantly associated with fertility rate. To verify these results, a total of 1900 Jing Hong laying hens from 2 populations (P1 and P2) were further genotyped by polymerase chain reaction-restriction fragments length polymorphisms method. The association analysis results revealed that 12 polymorphisms (AX-75769978, AX-76582632, AX-75730546, AX-75730496, AX-75730588, AX-76530282, AX-76530329, AX-76529310, AX-75769906, AX-75755394, AX-80813697 and AX-76582809) out of 20 showed highly significant effects (P < 0.0001) on fertility rate in P1, P2 and P1+P2. Six haplotypes (TTAA, TTGG, TTAG, CTAA, CTGG, and CTAG) were inferred based on significant loci (AX-75730546 and AX-76530282) also showed significant association with fertility rate, where haplotype CTAG was shown to be markedly associated with the significantly highest (P < 0.0001) fertility rate (in P1, 86.42 ± 0.59; P2, 85.98 ± 0.59 and P1+P2, 86.16 ± 0.42) followed by other haplotypes for the irrespective of population studied. Collectively, we report for the first time that 12 SNP in the chromosomes 3 and 13 were significantly associated with fertility rate during the later stage of egg production, which could be used as the potential genetic markers that would be able to facilitate in the selection and improvement of fertility rate through chicken breeding.
    MeSH term(s) Animals ; Breeding ; Chickens/genetics ; Chickens/growth & development ; Fertility/genetics ; Genetic Markers ; Genome-Wide Association Study/veterinary ; Polymerase Chain Reaction/veterinary ; Polymorphism, Restriction Fragment Length ; Polymorphism, Single Nucleotide
    Chemical Substances Genetic Markers
    Language English
    Publishing date 2020-04-10
    Publishing country England
    Document type Journal Article
    ZDB-ID 242586-5
    ISSN 1525-3171 ; 0032-5791
    ISSN (online) 1525-3171
    ISSN 0032-5791
    DOI 10.1016/j.psj.2019.12.068
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article: A genome-wide single nucleotide polymorphism scan reveals genetic markers associated with fertility rate in Chinese Jing Hong chicken

    Azmal, Syed Ali / Nan, Jiuhong / Bhuiyan, Ali Akbar / Elokil, Abdelmotaleb Ahmed / Ali, Mohammad Ishaque / Adetula, Adeyinka Abiola / Ma, Shuai / Sun, Chenghao / Han, Zhongdong / Yuan, Jingwei / Li, Shijun

    Poultry science. 2020 June, v. 99, no. 6

    2020  

    Abstract: The function of the sperm storage tubules is directly correlated with the fertility of laying hens. However, little is known about the molecular mechanisms regulating the fertility traits in chicken. To identify genetic markers associated with ... ...

    Abstract The function of the sperm storage tubules is directly correlated with the fertility of laying hens. However, little is known about the molecular mechanisms regulating the fertility traits in chicken. To identify genetic markers associated with reproductive traits, we calculated fertility rate at 61 to 69 wk (51 D) of Jing Hong chickens parent generation as the phenotype and the genotype were detected by the chicken 600K Affymetrix Axiom High Density single nucleotide polymorphisms (SNP)-array. The genome-wide association study using 190 Jing Hong hens showed that the 20 SNP in chromosomes 3 and 13 were significantly associated with fertility rate. To verify these results, a total of 1900 Jing Hong laying hens from 2 populations (P1 and P2) were further genotyped by polymerase chain reaction–restriction fragments length polymorphisms method. The association analysis results revealed that 12 polymorphisms (AX-75769978, AX-76582632, AX-75730546, AX-75730496, AX-75730588, AX-76530282, AX-76530329, AX-76529310, AX-75769906, AX-75755394, AX-80813697 and AX-76582809) out of 20 showed highly significant effects (P < 0.0001) on fertility rate in P1, P2 and P1+P2. Six haplotypes (TTAA, TTGG, TTAG, CTAA, CTGG, and CTAG) were inferred based on significant loci (AX-75730546 and AX-76530282) also showed significant association with fertility rate, where haplotype CTAG was shown to be markedly associated with the significantly highest (P < 0.0001) fertility rate (in P1, 86.42 ± 0.59; P2, 85.98 ± 0.59 and P1+P2, 86.16 ± 0.42) followed by other haplotypes for the irrespective of population studied. Collectively, we report for the first time that 12 SNP in the chromosomes 3 and 13 were significantly associated with fertility rate during the later stage of egg production, which could be used as the potential genetic markers that would be able to facilitate in the selection and improvement of fertility rate through chicken breeding.
    Keywords breeding ; egg production ; female fertility ; genetic markers ; genome-wide association study ; genotyping ; haplotypes ; laying hens ; loci ; phenotype ; polymerase chain reaction ; reproductive traits ; single nucleotide polymorphism ; spermatozoa
    Language English
    Dates of publication 2020-06
    Size p. 2873-2887.
    Publishing place Elsevier Inc.
    Document type Article
    ZDB-ID 242586-5
    ISSN 1525-3171 ; 0032-5791
    ISSN (online) 1525-3171
    ISSN 0032-5791
    DOI 10.1016/j.psj.2019.12.068
    Database NAL-Catalogue (AGRICOLA)

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