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  1. Article: Biology of tomato flu.

    Syed Ali, P Shaik / Ali, Sheeza

    New microbes and new infections

    2022  Volume 48, Page(s) 101031

    Language English
    Publishing date 2022-09-15
    Publishing country England
    Document type Journal Article
    ZDB-ID 2750179-6
    ISSN 2052-2975
    ISSN 2052-2975
    DOI 10.1016/j.nmni.2022.101031
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article: Enhanced endocytosis elevated virulence and severity of SARS-CoV-2 due to hyperglycemia in type 2 diabetic patients.

    Subbaram, Kannan / Ali, P Shaik Syed / Ali, Sheeza

    Gene reports

    2022  Volume 26, Page(s) 101495

    Abstract: Diabetes mellitus is a metabolic disease that causes hyperglycemia. In COVID-19 patients the severity of the disease depends on myriad factors but diabetes mellitus is the most important comorbidity. The current review was conducted to investigate the ... ...

    Abstract Diabetes mellitus is a metabolic disease that causes hyperglycemia. In COVID-19 patients the severity of the disease depends on myriad factors but diabetes mellitus is the most important comorbidity. The current review was conducted to investigate the virulence of SARS-CoV-2 and disease severity of COVID-19 in type 2 diabetes mellitus patients and relevant treatment. The literature published in PubMed, Scopus, Web of Science, and Google Scholar was reviewed up to September 2021. The keywords including SARS-CoV-2, type 2 diabetes mellitus in COVID-19, hyperglycemia in COVID-19, opportunistic infections in type 2 diabetes mellitus and COVID-19 were used in different combinations. Hyperglycemic individuals over-express ACE-2 receptors in the lungs thus increasing the SARS-CoV-2 susceptibility and replication. Although dipeptidyl peptidase-4 plays an important role in glucose homeostasis, additionally it also stimulates the production of proinflammatory cytokines such as IL-6 and TNF-α creating a cytokine storm. Cytokine storm might be responsible for respiratory insufficiency in severe COVID-19 patients. Type 2 diabetes mellitus is associated with immunosuppression and the patients are prone to get many opportunistic infections. Type 2 diabetes mellitus patients with severe COVID-19 have lymphopenia. Moreover, in type 2 diabetes mellitus patients the neutrophils exhibit decreased chemotaxis, hydrogen peroxide production, and phagocytosis. Reduction in lymphocyte count and defective neutrophil capacity renders them with COVID-19 susceptible to opportunistic bacterial and fungal infections increasing the mortality rate. The opportunistic bacterial infections in COVID-19 patients were due to
    Language English
    Publishing date 2022-01-14
    Publishing country United States
    Document type Journal Article ; Review
    ISSN 2452-0144
    ISSN 2452-0144
    DOI 10.1016/j.genrep.2022.101495
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Book ; Online: Maldives

    World Health Organization / Moosa, Sheena / Ali, Sheeza / Abdullah, Aiminath Shaina

    a primary health care case study in the context of the COVID-19 pandemic

    2023  

    Abstract: v, 17 p. ...

    Abstract v, 17 p.
    Keywords Primary Health Care ; Maldives ; Indian Ocean Islands ; COVID-19 ; Pandemics ; Case Reports
    Language English
    Publisher World Health Organization
    Document type Book ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article: Molecular characterization and amino acid homology of nucleocapsid (N) Protein in SARS-CoV-1, SARS-CoV-2, MERS-CoV, and bat coronavirus

    Kannan, Shantani / Subbaram, Kannan / Ali, Sheeza / Kannan, Hemalatha

    J. Pure Appl. Microbiol.

    Abstract: Coronavirus disease – 2019 (COVID-19) pandemic, due to severe acute respiratory syndrome–coronavirus-2 (SARS-CoV-2), is posing a severe bio threat to the entire world. Nucleocapsids of SARS-CoV-2 and the related viruses were studied for gene and amino ... ...

    Abstract Coronavirus disease – 2019 (COVID-19) pandemic, due to severe acute respiratory syndrome–coronavirus-2 (SARS-CoV-2), is posing a severe bio threat to the entire world. Nucleocapsids of SARS-CoV-2 and the related viruses were studied for gene and amino acid sequence homologies. In this study, we established similarities and differences in nucleocapsids in SARS-CoV-2, severe acute respiratory syndrome – coronavirus-1 (SARS-CoV-1), bat coronavirus (bat-CoV) and Middle East respiratory syndrome - coronavirus (MERS-CoV). We conducted a detailed analysis of the nucleocapsid protein amino acid and gene sequence encoding it, found in various coronavirus strains. After thoroughly screening the different nucleocapsids, we observed a close molecular homology between SARS-CoV-1 and SARS-CoV-2. More than 95% sequence similarity was observed between the two SARS-CoV strains. Bat-CoV and SARS-CoV-2 showed 92% sequence similarity. MERS-CoV and SARS-CoV-2 nucleocapsid analysis indicated only 65% identity. Molecular characterization of nucleocapsids from various coronaviruses revealed that SARS-CoV 2 is more related to SARS-CoV 1 and bat-CoV. SARS-CoV 2 exhibited less resemblance with MERS-CoV. SARS-CoV 2 showed less similarity to MERS-CoV. Thus, either SARS-CoV-1 or bat-CoV may be the source of SARS-CoV-2 evolution. Moreover, the existing differences in nucleocapsid molecular structures in SARS-CoV-2 make this virus more virulent and highly infectious, which means that the non-identical SARS-CoV-2 genes (which are absent in SARS-CoV-1 and bat-CoV) are responsible for COVID-19 severity. We observed that SARS-CoV-2 nucleocapsid from different locations varied in amino acid sequences. This revealed that there are many SARS-CoV-2 subtypes/subsets currently circulating globally. This study will help to develop antiviral vaccine and drugs, study viral replication and immunopathogenesis, and synthesize monoclonal antibodies that can be used for precise COVID-19 diagnosis, without false-positive/false-negative results.
    Keywords covid19
    Publisher WHO
    Document type Article
    Note WHO #Covidence: #609003
    Database COVID19

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  5. Article: The role of artificial intelligence and machine learning techniques: Race for COVID-19 vaccine

    Kannan, Shantani / Subbaram, Kannan / Ali, Sheeza / Kannan, Hemalatha

    Arch. Clin. Infect. Dis.

    Abstract: Context: In the healthcare system, Artificial Intelligence (AI) is emerging as a productive tool. There are instances where AI has done marvels in the diagnosis of various health conditions and the interpretation of complex medical disorders. Although AI ...

    Abstract Context: In the healthcare system, Artificial Intelligence (AI) is emerging as a productive tool. There are instances where AI has done marvels in the diagnosis of various health conditions and the interpretation of complex medical disorders. Although AI is far from human intelligence, it can be used as an effective tool to study the SARS-CoV-2 and its capabilities, virulence, and genome. The progress of the pandemic can be tracked, and the patients can be monitored, thereby speeding up the research for the treatment of COVID-19. In this review article, we highlighted the importance of AI and Machine learning (ML) techniques that can speed up the path to the discovery of a possible cure for COVID-19. We also deal with the interactions between viromics and AI, which can hopefully find a solution to this pandemic. Evidence Acquisition: A review of different articles was conducted using the following databases: MEDLINE/PubMed, SCOPUS, Web of Science, ScienceDirect, and Google Scholar for recent studies regarding the use of AI, seeking the spread of different infectious diseases using relevant MeSH subheadings. Results: After a thorough screening of different articles, 30 articles were considered, and key information was obtained from them. Finally, the scope was broadened to obtain more information. Our findings indicated that AI/ML is a promising approach to drug development. Conclusions: The field of AI has enormous potential to predict the changes that may take place in the environment. If this technology is applied to situations of a pandemic such as COVID-19, breakthroughs could potentially pave the way for new vaccines and antiviral drugs.
    Keywords covid19
    Publisher WHO
    Document type Article
    Note WHO #Covidence: #627793
    Database COVID19

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  6. Article: Paradoxical Role of Dengue Virus Envelope Protein Domain III Antibodies in Dengue Virus Infection.

    Ali, Sheeza / Afzal, Samia / Yousaf, Muhammad Zubair / Shahid, Muhammad / Amin, Iram / Idrees, Muhammad / Aftab, Ayma

    Critical reviews in eukaryotic gene expression

    2020  Volume 30, Issue 3, Page(s) 199–206

    Abstract: Every year, approximately 100 million individuals are infected with dengue viral infections. Severe dengue infection, characterized as dengue hemorrhagic fever, leads to loss of intravascular fluids and severe bleeding. During dengue virus (DENV) ... ...

    Abstract Every year, approximately 100 million individuals are infected with dengue viral infections. Severe dengue infection, characterized as dengue hemorrhagic fever, leads to loss of intravascular fluids and severe bleeding. During dengue virus (DENV) secondary infection, the body produces neutralizing antibodies that cause a strong immune response, resulting in severe hemolysis and plasma leakage. DENV infections in humans stimulate production of virus serotype-specific and cross-reactive antibodies. The envelope (E) protein of DENV contains potent antigenic sites, with one known as E protein domain III (EDIII). Studies of DENV EDIII in mouse models have shown that strongly neutralizing mouse monoclonal antibodies (mAbs) are DENV-serotype specific and bind to an epitope on EDIII that is unique to each serotype. Unlike DENV-serotype-specific mouse mAbs, cross-reactive mAbs that bind to EDIII have moderate-to-weak neutralizing activity. Studies with mouse mAbs resulted in identification and mapping of different epitopes on the lateral ridge of DENV EDIII.
    MeSH term(s) Animals ; Antibodies, Monoclonal/immunology ; Antibodies, Neutralizing ; Antibodies, Viral/immunology ; Cross Reactions ; Dengue/immunology ; Dengue/virology ; Dengue Virus/physiology ; Epitopes/immunology ; Humans ; Mice ; Models, Animal ; Protein Domains ; Serogroup ; Viral Envelope Proteins/immunology
    Chemical Substances Antibodies, Monoclonal ; Antibodies, Neutralizing ; Antibodies, Viral ; Epitopes ; Viral Envelope Proteins
    Language English
    Publishing date 2020-08-04
    Publishing country United States
    Document type Journal Article
    ZDB-ID 1071345-1
    ISSN 1045-4403
    ISSN 1045-4403
    DOI 10.1615/CritRevEukaryotGeneExpr.2020028598
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  7. Article: Global data analysis and risk factors associated with morbidity and mortality of COVID-19.

    Tazerji, Sina Salajegheh / Shahabinejad, Fatemeh / Tokasi, Mahya / Rad, Mohammad Ali / Khan, Muhammad Sajjad / Safdar, Muhammad / Filipiak, Krzysztof J / Szarpak, Lukasz / Dzieciatkowski, Tomasz / Jurgiel, Jan / Duarte, Phelipe Magalhães / Rahman, Md Tanvir / Sobur, Md Abdus / Islam, Md Saiful / Ahmed, Adnan / Shaheen, Mohamed N F / Shehata, Awad A / Gharieb, Rasha / Fawzy, Mohamed /
    Malik, Yashpal Singh / Jaganathasamy, Nagaraj / Rajendran, Vinodhkumar Obli / Subbaram, Kannan / Ali, P Shaik Syed / Ali, Sheeza / Rehman, Saif Ur / Ozaslan, Mehmet / Khan, Gulfaraz / Saeed, Muhammad / Younas, Umair / Imran, Safdar / Junejo, Yasmeen / Arabkarami, Parmida / Hogan, Unarose / Rodriguez-Morales, Alfonso J

    Gene reports

    2022  Volume 26, Page(s) 101505

    Abstract: This review was focused on global data analysis and risk factors associated with morbidity and mortality of coronavirus disease 2019 from different countries, including Bangladesh, Brazil, China, Central Eastern Europe, Egypt, India, Iran, Pakistan, and ... ...

    Abstract This review was focused on global data analysis and risk factors associated with morbidity and mortality of coronavirus disease 2019 from different countries, including Bangladesh, Brazil, China, Central Eastern Europe, Egypt, India, Iran, Pakistan, and South Asia, Africa, Turkey and UAE. Male showed higher confirmed and death cases compared to females in most of the countries. In addition, the case fatality ratio (CFR) for males was higher than for females. This gender variation in COVID-19 cases may be due to males' cultural activities, but similar variations in the number of COVID-19 affected males and females globally. Variations in the immune system can illustrate this divergent risk comparatively higher in males than females. The female immune system may have an edge to detect pathogens slightly earlier. In addition, women show comparatively higher innate and adaptive immune responses than men, which might be explained by the high density of immune-related genes in the X chromosome. Furthermore, SARS-CoV-2 viruses use angiotensin-converting enzyme 2 (ACE2) to enter the host cell, and men contain higher ACE2 than females. Therefore, males may be more vulnerable to COVID-19 than females. In addition, smoking habit also makes men susceptible to COVID-19. Considering the age-wise distribution, children and older adults were less infected than other age groups and the death rate. On the contrary, more death in the older group may be associated with less immune system function. In addition, most of these group have comorbidities like diabetes, high pressure, low lungs and kidney function, and other chronic diseases. Due to the substantial economic losses and the numerous infected people and deaths, research examining the features of the COVID-19 epidemic is essential to gain insight into mitigating its impact in the future and preparedness for any future epidemics.
    Language English
    Publishing date 2022-01-15
    Publishing country United States
    Document type Journal Article ; Review
    ISSN 2452-0144
    ISSN 2452-0144
    DOI 10.1016/j.genrep.2022.101505
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  8. Article ; Online: Nonpharmaceutical interventions reduce the incidence and mortality of COVID-19: A study based on the survey from the International COVID-19 Research Network (ICRN).

    Park, Seung Hyun / Hong, Sung Hwi / Kim, Kwanghyun / Lee, Seung Won / Yon, Dong Keon / Jung, Sun Jae / Abdeen, Ziad / Ghayda, Ramy Abou / Ahmed, Mohamed Lemine Cheikh Brahim / Serouri, Abdulwahed Al / Al-Herz, Waleed / Al-Shamsi, Humaid O / Ali, Sheeza / Ali, Kosar / Baatarkhuu, Oidov / Nielsen, Henning Bay / Bernini-Carri, Enrico / Bondarenko, Anastasiia / Cassell, Ayun /
    Cham, Akway / Chua, Melvin L K / Dadabhai, Sufia / Darre, Tchin / Davtyan, Hayk / Dragioti, Elena / East, Barbora / Edwards, Robert Jeffrey / Ferioli, Martina / Georgiev, Tsvetoslav / Ghandour, Lilian A / Harapan, Harapan / Hsueh, Po-Ren / Mallah, Saad I / Ikram, Aamer / Inoue, Shigeru / Jacob, Louis / Janković, Slobodan M / Jayarajah, Umesh / Jesenak, Milos / Kakodkar, Pramath / Kapata, Nathan / Kebede, Yohannes / Khader, Yousef / Kifle, Meron / Koh, David / Maleš, Višnja Kokić / Kotfis, Katarzyna / Koyanagi, Ai / Kretchy, James-Paul / Lakoh, Sulaiman / Lee, Jinhee / Lee, Jun Young / Mendonça, Maria da Luz Lima / Ling, Lowell / Llibre-Guerra, Jorge / Machida, Masaki / Makurumidze, Richard / Memish, Ziad A / Mendoza, Ivan / Moiseev, Sergey / Nadasdy, Thomas / Nahshon, Chen / Ñamendys-Silva, Silvio A / Yongsi, Blaise Nguendo / Nicolasora, Amalea Dulcene / Nugmanova, Zhamilya / Oh, Hans / Oksanen, Atte / Owopetu, Oluwatomi / Ozguler, Zeynep Ozge / Parperis, Konstantinos / Perez, Gonzalo Emanuel / Pongpirul, Krit / Rademaker, Marius / Radojevic, Nemanja / Roca, Anna / Rodriguez-Morales, Alfonso J / Roshi, Enver / Saeed, Khwaja Mir Islam / Sah, Ranjit / Sakakushev, Boris / Sallam, Dina E / Sathian, Brijesh / Schober, Patrick / Ali, P Shaik Syed / Simonović, Zoran / Singhal, Tanu / Skhvitaridze, Natia / Solmi, Marco / Subbaram, Kannan / Tizaoui, Kalthoum / Tlhakanelo, John Thato / Torales, Julio / Torres-Roman, Junior Smith / Tsartsalis, Dimitrios / Tsolmon, Jadamba / Vieira, Duarte Nuno / Rosa, Sandro G Viveiros / Wanghi, Guy / Wollina, Uwe / Xu, Ren-He / Yang, Lin / Zia, Kashif / Zildzic, Muharem / Il Shin, Jae / Smith, Lee

    Journal of medical virology

    2022  Volume 95, Issue 2, Page(s) e28354

    Abstract: The recently emerged novel coronavirus, "severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2)," caused a highly contagious disease called coronavirus disease 2019 (COVID-19). It has severely damaged the world's most developed countries and has ... ...

    Abstract The recently emerged novel coronavirus, "severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2)," caused a highly contagious disease called coronavirus disease 2019 (COVID-19). It has severely damaged the world's most developed countries and has turned into a major threat for low- and middle-income countries. Since its emergence in late 2019, medical interventions have been substantial, and most countries relied on public health measures collectively known as nonpharmaceutical interventions (NPIs). We aimed to centralize the accumulative knowledge of NPIs against COVID-19 for each country under one worldwide consortium. International COVID-19 Research Network collaborators developed a cross-sectional online survey to assess the implications of NPIs and sanitary supply on the incidence and mortality of COVID-19. The survey was conducted between January 1 and February 1, 2021, and participants from 92 countries/territories completed it. The association between NPIs, sanitation supplies, and incidence and mortality were examined by multivariate regression, with the log-transformed value of population as an offset value. The majority of countries/territories applied several preventive strategies, including social distancing (100.0%), quarantine (100.0%), isolation (98.9%), and school closure (97.8%). Individual-level preventive measures such as personal hygiene (100.0%) and wearing facial masks (94.6% at hospitals; 93.5% at mass transportation; 91.3% in mass gathering facilities) were also frequently applied. Quarantine at a designated place was negatively associated with incidence and mortality compared to home quarantine. Isolation at a designated place was also associated with reduced mortality compared to home isolation. Recommendations to use sanitizer for personal hygiene reduced incidence compared to the recommendation to use soap. Deprivation of masks was associated with increased incidence. Higher incidence and mortality were found in countries/territories with higher economic levels. Mask deprivation was pervasive regardless of economic level. NPIs against COVID-19 such as using sanitizer, quarantine, and isolation can decrease the incidence and mortality of COVID-19.
    MeSH term(s) Humans ; COVID-19/epidemiology ; SARS-CoV-2 ; Incidence ; Cross-Sectional Studies ; Quarantine
    Language English
    Publishing date 2022-11-30
    Publishing country United States
    Document type Journal Article
    ZDB-ID 752392-0
    ISSN 1096-9071 ; 0146-6615
    ISSN (online) 1096-9071
    ISSN 0146-6615
    DOI 10.1002/jmv.28354
    Database MEDical Literature Analysis and Retrieval System OnLINE

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