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  1. Article ; Online: The Canadian National Vaccine Safety Network

    Gaston De Serres / Manish Sadarangani / Karina A Top / James D Kellner / Allison McGeer / Louis Valiquette / Julie A Bettinger / Otto G Vanderkooi / Matthew P Muller / Jennifer E Isenor / Kimberly Marty

    BMJ Open, Vol 12, Iss

    surveillance of adverse events following immunisation among individuals immunised with the COVID-19 vaccine, a cohort study in Canada

    2022  Volume 1

    Keywords Medicine ; R
    Language English
    Publishing date 2022-01-01T00:00:00Z
    Publisher BMJ Publishing Group
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  2. Article ; Online: Post-exposure prophylaxis against SARS-CoV-2 in close contacts of confirmed COVID-19 cases (CORIPREV)

    Darrell H. S. Tan / Adrienne K. Chan / Peter Jüni / George Tomlinson / Nick Daneman / Sharon Walmsley / Matthew Muller / Rob Fowler / Srinivas Murthy / Natasha Press / Curtis Cooper / Todd Lee / Tony Mazzulli / Allison McGeer

    Trials, Vol 22, Iss 1, Pp 1-

    study protocol for a cluster-randomized trial

    2021  Volume 16

    Abstract: Abstract Background Post-exposure prophylaxis (PEP) is a well-established strategy for the prevention of infectious diseases, in which recently exposed people take a short course of medication to prevent infection. The primary objective of the COVID-19 ... ...

    Abstract Abstract Background Post-exposure prophylaxis (PEP) is a well-established strategy for the prevention of infectious diseases, in which recently exposed people take a short course of medication to prevent infection. The primary objective of the COVID-19 Ring-based Prevention Trial with lopinavir/ritonavir (CORIPREV-LR) is to evaluate the efficacy of a 14-day course of oral lopinavir/ritonavir as PEP against COVID-19 among individuals with a high-risk exposure to a confirmed case. Methods This is an open-label, multicenter, 1:1 cluster-randomized trial of LPV/r 800/200 mg twice daily for 14 days (intervention arm) versus no intervention (control arm), using an adaptive approach to sample size calculation. Participants will be individuals aged > 6 months with a high-risk exposure to a confirmed COVID-19 case within the past 7 days. A combination of remote and in-person study visits at days 1, 7, 14, 35, and 90 includes comprehensive epidemiological, clinical, microbiologic, and serologic sampling. The primary outcome is microbiologically confirmed COVID-19 infection within 14 days after exposure, defined as a positive respiratory tract specimen for SARS-CoV-2 by polymerase chain reaction. Secondary outcomes include safety, symptomatic COVID-19, seropositivity, hospitalization, respiratory failure requiring ventilator support, mortality, psychological impact, and health-related quality of life. Additional analyses will examine the impact of LPV/r on these outcomes in the subset of participants who test positive for SARS-CoV-2 at baseline. To detect a relative risk reduction of 40% with 80% power at α = 0.05, assuming the secondary attack rate in ring members (p 0) = 15%, 5 contacts per case and intra-class correlation coefficient (ICC) = 0.05, we require 110 clusters per arm, or 220 clusters overall and approximately 1220 enrollees after accounting for 10% loss-to-follow-up. We will modify the sample size target after 60 clusters, based on preliminary estimates of p 0, ICC, and cluster size and consider switching ...
    Keywords COVID-19 ; Randomized controlled trial ; Protocol ; Cluster randomization ; Post-exposure prophylaxis ; Chemoprophylaxis ; Medicine (General) ; R5-920
    Language English
    Publishing date 2021-03-01T00:00:00Z
    Publisher BMC
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  3. Article ; Online: COVID-19 vaccine antibody responses in community-dwelling adults to 48 weeks post primary vaccine series

    Sharon L. Walmsley / Leah Szadkowski / Bradly Wouters / Rosemarie Clarke / Karen Colwill / Paula Rochon / Michael Brudno / Rizanni Ravindran / Janet Raboud / Allison McGeer / Amit Oza / Christopher Graham / Amanda Silva / Dorin Manase / Peter Maksymowsky / Laura Parente / Roaya Monica Dayam / Jacqueline Simpson / Adrian Pasculescu /
    Anne-Claude Gingras

    iScience, Vol 26, Iss 4, Pp 106506- (2023)

    2023  

    Abstract: Summary: We report a decentralized prospective cohort study of self-reported adverse events and antibody responses to COVID vaccines derived from dried blood spots. Data are presented for 911 older (aged >70 years) and 375 younger (30–50 years) recruits ... ...

    Abstract Summary: We report a decentralized prospective cohort study of self-reported adverse events and antibody responses to COVID vaccines derived from dried blood spots. Data are presented for 911 older (aged >70 years) and 375 younger (30–50 years) recruits to 48 weeks after the primary vaccine series. After a single vaccine, 83% younger and 45% older participants had overall seropositivity (p < 0.0001) increasing to 100/98% with the second dose, respectively (p = 0.084). A cancer diagnosis (p = 0.009), no mRNA-1273 vaccine doses (p <0 .0001), and older age (p <0 .0001) predicted lower responses. Antibody levels declined in both cohorts at 12 and 24 weeks increasing with booster doses. At 48 weeks, for participants with 3 vaccine doses, the median antibody levels were higher in the older cohort (p = 0.04) with any dose of mRNA-1273 (p <0 .0001) and with COVID infection (p <0 .001). The vaccines were well tolerated. Breakthrough COVID infections were uncommon (16% older cohort, 29% younger cohort; p < 0.0001) and mild.
    Keywords Health sciences ; Public health ; Immunology ; Immune response ; Microbiology ; Science ; Q
    Language English
    Publishing date 2023-04-01T00:00:00Z
    Publisher Elsevier
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  4. Article ; Online: Epidemiology of central-line–associated bloodstream infection mortality in Canadian NICUs before and after 2017

    Maria Spagnuolo / Anada Silva / Jessica Bartoszko / Linda Pelude / Blanda Chow / Jeannette Comeau / Chelsey Ellis / Charles Frenette / Lynn Johnston / Kevin Katz / Joanne Langley / Bonita Lee / Santina Lee / Marie-Astrid Lefebvre / Allison McGeer / Dorothy Moore / Senthuri Paramalingam / Jennifer Parsonage / Donna Penney /
    Caroline Quach / Michelle Science / Stephanie Smith / Kathryn Suh / Jocelyn Srigley

    Antimicrobial Stewardship & Healthcare Epidemiology, Vol 3, Pp s48-s

    2023  Volume 48

    Abstract: Background: The Canadian Nosocomial Infection Surveillance Program (CNISP) observed increased mortality among neonatal intensive care unit (NICU) patients with central-line–associated bloodstream infection (CLABSI) starting in 2017. In this study, we ... ...

    Abstract Background: The Canadian Nosocomial Infection Surveillance Program (CNISP) observed increased mortality among neonatal intensive care unit (NICU) patients with central-line–associated bloodstream infection (CLABSI) starting in 2017. In this study, we compared NICU patients with CLABSIs before and after 2017, and quantified the impact of epidemiological factors on 30-day survival. Methods: We included 1,276 NICU patients from 8–16 participating CNISP hospitals from the pre-2017 period (2009–2016) and the post-2017 period (2017–2022) using standardized definitions and questionnaires. We used Cox regression modeling to assess the impact of age at date of positive culture, sex, birthweight, CLABSI microorganism, region of the country, and surveillance period (before 2017 vs after 2017) on time to 30-day all-cause mortality from date of positive culture. Gestational age was not available for this analysis. We reported model outputs as hazard ratios with 95% CIs. Results: In total, 769 (60%) NICU CLABSIs were reported in the pre-2017 period and 507 (40%) in the post-2017 period. The 30-day all-cause mortality rate was 8% (n = 100 of 1,276) overall, and significantly higher after 2017 (12%, n = 61 of 507) than before 2017 (5%, n = 39 of 769) (P < .001).
    Keywords Infectious and parasitic diseases ; RC109-216 ; Public aspects of medicine ; RA1-1270
    Language English
    Publishing date 2023-06-01T00:00:00Z
    Publisher Cambridge University Press
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  5. Article ; Online: Estimating population-based incidence of community-acquired pneumonia and acute otitis media in children and adults in Ontario and British Columbia using health administrative data, 2005–2018

    Jun Wang / Shaun K Morris / Linda Hoang / Manish Sadarangani / Fawziah Marra / Jeffrey C Kwong / James D Kellner / Beate Sander / Allison McGeer / Caroline Quach / Sarah E Wilson / Natasha S Crowcroft / Sharifa Nasreen / Julianne V Kus / Shaza A Fadel

    BMJ Open Respiratory Research, Vol 9, Iss

    a Canadian Immunisation Research Network (CIRN) study

    2022  Volume 1

    Abstract: Background There is a paucity of data on the burden of the full spectrum of community-acquired pneumonia (CAP) and acute otitis media (AOM) from outpatient and inpatient settings across the age spectrum.Methods We conducted a population-based ... ...

    Abstract Background There is a paucity of data on the burden of the full spectrum of community-acquired pneumonia (CAP) and acute otitis media (AOM) from outpatient and inpatient settings across the age spectrum.Methods We conducted a population-based retrospective study in Ontario and British Columbia (BC), Canada, to estimate the incidence rate of CAP and AOM in children and adults over a 14-year period using health administrative databases. CAP and AOM cases were identified from outpatient physician consultation and hospitalisation data in both provinces, and from emergency department visit data in Ontario.Results During 2005–2018, Ontario had 3 607 124 CAP, 172 290 bacterial CAP, 7814 pneumococcal pneumonia, and 8 026 971 AOM cases. The incidence rate of CAP declined from 3077/100 000 in 2005 to 2604/100 000 in 2010 before increasing to 2843/100 000 in 2018; bacterial CAP incidence rate also declined from 178/100 000 in 2005 to 112/100 000 in 2010 before increasing to 149/100 000 in 2018. The incidence rate of AOM decreased from 4192/100 000 in 2005 to 3178/100 000 in 2018. BC had 970 455 CAP, 317 913 bacterial CAP, 35 287 pneumococcal pneumonia and 2 022 871 AOM cases. The incidence rate of CAP in BC decreased from 2214/100 000 in 2005 to 1964/100 000 in 2010 before increasing to 2176/100 000 in 2018; bacterial CAP incidence rate increased from 442/100 000 in 2005 to 981/100 000 in 2018. The incidence rate of AOM decreased from 3684/100 000 in 2005 to 2398/100 000 in 2018. The incidence rate of bacterial CAP increased with age in older adults (≥65 years) with the highest burden in the oldest cohort aged ≥85 years both before and after 13-valent pneumococcal conjugate vaccine (PCV13) programme in both provinces. Hospitalised pneumococcal pneumonia decreased slightly but non-hospitalised pneumococcal pneumonia increased in BC during PCV13 period. No consistent direct benefit of PCV13 on CAP was observed in the paediatric population.Conclusions There is a substantial burden of CAP and AOM in Ontario and BC. Indirect ...
    Keywords Medicine ; R ; Diseases of the respiratory system ; RC705-779
    Subject code 336
    Language English
    Publishing date 2022-02-01T00:00:00Z
    Publisher BMJ Publishing Group
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  6. Article: Measuring influenza RNA quantity after prolonged storage or multiple freeze/thaw cycles

    Granados, Andrea / Astrid Petrich / Allison McGeer / Jonathan B. Gubbay

    Journal of virological methods. 2017 Sept., v. 247

    2017  

    Abstract: In this study, we aim to determine what effects prolonged storage and repeated freeze/thaw cycles have on the stability of influenza A(H1N1)pdm09 (influenza A/H1N1)RNA. Cloned influenza A/H1N1 RNA transcripts were serially diluted from 8.0-1.0 log10 ... ...

    Abstract In this study, we aim to determine what effects prolonged storage and repeated freeze/thaw cycles have on the stability of influenza A(H1N1)pdm09 (influenza A/H1N1)RNA. Cloned influenza A/H1N1 RNA transcripts were serially diluted from 8.0-1.0 log10 copies/μl. RT-qPCR was used to measure RNA loss in transcripts stored at −80°C, −20°C, 4°C and 25°C for up to 84days or transcripts undergoing a total of 10 freeze/thaw cycles. Viral load was measured in clinical specimens stored at–80°C for three years (n=89 influenza A RNA extracts; n=35 primary specimens) and in 10 clinical specimens from the 2015/2016 influenza season that underwent 7 freeze/thaw cycles. RNA stored at −80°C, −20°C, 4°C and 25°C is stable for up to 56, 56, 21, and 7days respectively or up to 9 freeze/thaw cycles when stored at −80°C. There is no difference in viral load in clinical specimens that have been stored for up to three years at −80°C if they are re-extracted. Similarly, clinical specimens undergoing up to 7 freeze/thaw cycles are stable if they are re-extracted between cycles. Influenza specimens can be stored for up to three years at −80°C or undergo up to 7 freeze/thaw cycles without loss of RNA quantity if re-extracted.
    Keywords influenza ; messenger RNA ; quantitative polymerase chain reaction ; reverse transcriptase polymerase chain reaction ; storage time ; viral load
    Language English
    Dates of publication 2017-09
    Size p. 45-50.
    Publishing place Elsevier B.V.
    Document type Article
    ZDB-ID 8013-5
    ISSN 1879-0984 ; 0166-0934
    ISSN (online) 1879-0984
    ISSN 0166-0934
    DOI 10.1016/j.jviromet.2017.05.018
    Database NAL-Catalogue (AGRICOLA)

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  7. Article: External cues to action and influenza vaccination among post-graduate trainee physicians in Toronto, Canada

    Nowrouzi-Kia, Behnam / Allison McGeer

    Vaccine. 2014 June 24, v. 32, no. 30

    2014  

    Abstract: Understanding factors affecting trainee physician choices about vaccination may permit the design of more effective vaccination programmes.To identify factors associated with seasonal and pandemic influenza vaccination, an online questionnaire based on ... ...

    Abstract Understanding factors affecting trainee physician choices about vaccination may permit the design of more effective vaccination programmes.To identify factors associated with seasonal and pandemic influenza vaccination, an online questionnaire based on the health belief model was sent to trainee physicians registered at the post-graduate medical education office at the University of Toronto in September 2011.963 complete responses were received from 1884 trainee physicians (51%); 28 (2.9%) reported an allergy to vaccine components and were excluded from further analysis. Reported seasonal influenza vaccination rates in 2008, 2009 and 2010 were 69% (648/935), 75% (708/935) and 76% (703/935), respectively; 788 (84%) reported receiving the A(H1N1)pdm09 vaccine. In multivariable analysis, number of years of post-graduate training (OR for 4+ versus 1–3 post-graduate years 2.2 (95% CL 1.3, 3.8)) was associated with receipt of the 2009 pandemic vaccine, as were four components of the health belief model: odds ratios were 4.7 (95% CL 3.0, 7.5) for perceived severity, 1.9 (95% CL 1.2, 2.9) for perceived benefits, .35 (95% CL .21, .59) for perceived barriers, and 5.8 (95% CLI 3.6, 9.1) for external cues to action. Both vaccinated and unvaccinated respondents reported that their decisions were significantly influenced by encouragement from their colleagues, families and employers.Self-reported vaccination coverage among trainee physicians was high. External cues to action appear to be particularly important in trainee physician vaccination decisions: active institutional promotion may increase influenza vaccination rates in trainees.
    Keywords hypersensitivity ; influenza ; medical education ; models ; odds ratio ; pandemic ; physicians ; questionnaires ; vaccination ; vaccines ; Canada
    Language English
    Dates of publication 2014-0624
    Size p. 3830-3834.
    Publishing place Elsevier Ltd
    Document type Article
    ZDB-ID 605674-x
    ISSN 1873-2518 ; 0264-410X
    ISSN (online) 1873-2518
    ISSN 0264-410X
    DOI 10.1016/j.vaccine.2014.04.067
    Database NAL-Catalogue (AGRICOLA)

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  8. Article ; Online: Capsular Switching and Other Large-Scale Recombination Events in Invasive Sequence Type 1 Group B Streptococcus

    Alefiya Neemuchwala / Sarah Teatero / Taryn B.T. Athey / Allison McGeer / Nahuel Fittipaldi

    Emerging Infectious Diseases, Vol 22, Iss 11, Pp 1941-

    2016  Volume 1944

    Abstract: We report several cases of recombination events leading to capsular switching among sequence type (ST) 1 group B Streptococcus strains. These strains otherwise shared a common genome backbone with serotype V ST1 strains. However, the genomes of ST1 ... ...

    Abstract We report several cases of recombination events leading to capsular switching among sequence type (ST) 1 group B Streptococcus strains. These strains otherwise shared a common genome backbone with serotype V ST1 strains. However, the genomes of ST1 serotype V strains and those of serotypes VI, VII, and VIII strains differed substantially.
    Keywords group B Streptococcus ; capsular switching ; recombination ; whole-genome sequencing ; bacteria ; streptococci ; Medicine ; R ; Infectious and parasitic diseases ; RC109-216
    Language English
    Publishing date 2016-11-01T00:00:00Z
    Publisher Centers for Disease Control and Prevention
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  9. Article ; Online: Genetic Diversity and Antimicrobial Drug Resistance of Serotype VI Group B Streptococcus, Canada

    Alefiya Neemuchwala / Sarah Teatero / Lindsay Liang / Irene Martin / Walter Demzcuk / Allison McGeer / Nahuel Fittipaldi

    Emerging Infectious Diseases, Vol 24, Iss 10, Pp 1941-

    2018  Volume 1942

    Abstract: Two genetically dissimilar sequence type 1 clades dominate the serotype VI group B Streptococcus population of strains causing invasive disease in Canada. Isolates of this rare serotype, recovered mainly from adult patients, were all susceptible to ... ...

    Abstract Two genetically dissimilar sequence type 1 clades dominate the serotype VI group B Streptococcus population of strains causing invasive disease in Canada. Isolates of this rare serotype, recovered mainly from adult patients, were all susceptible to penicillin and vancomycin. However, we observed resistance to erythromycin and clindamycin.
    Keywords Streptococcus group B ; Streptococcus agalactiae ; genomics ; genetic diversity ; drug resistance ; microbial ; Medicine ; R ; Infectious and parasitic diseases ; RC109-216
    Language English
    Publishing date 2018-10-01T00:00:00Z
    Publisher Centers for Disease Control and Prevention
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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  10. Article ; Online: Cross-reactive immunity against SARS-CoV-2 N protein in Central and West Africa precedes the COVID-19 pandemic

    Jannie Pedersen / Ismaël Hervé Koumakpayi / Giorgi Babuadze / Mariana Baz / Oumar Ndiaye / Oumar Faye / Cheikh Tidiane Diagne / Ndongo Dia / Maedeh Naghibosadat / Allison McGeer / Samira Muberaka / Irène P. Moukandja / Stella Ndidi / Carlos B. Tauil / Jean-Bernard Lekana-Douki / Cheikh Loucoubar / Ousmane Faye / Amadou Sall / Kelly G. Magalhães /
    Nina Weis / Robert Kozak / Gary P. Kobinger / Hugues Fausther-Bovendo

    Scientific Reports, Vol 12, Iss 1, Pp 1-

    2022  Volume 7

    Abstract: Abstract Early predictions forecasted large numbers of severe acute respiratory syndrome coronavirus (SARS-CoV-2) cases and associated deaths in Africa. To date, Africa has been relatively spared. Various hypotheses were postulated to explain the lower ... ...

    Abstract Abstract Early predictions forecasted large numbers of severe acute respiratory syndrome coronavirus (SARS-CoV-2) cases and associated deaths in Africa. To date, Africa has been relatively spared. Various hypotheses were postulated to explain the lower than anticipated impact on public health in Africa. However, the contribution of pre-existing immunity is yet to be investigated. In this study, the presence of antibodies against SARS-CoV-2 spike (S) and nucleocapsid (N) proteins in pre-pandemic samples from Africa, Europe, South and North America was examined by ELISA. The protective efficacy of N specific antibodies isolated from Central African donors was tested by in vitro neutralization and in a mouse model of SARS-CoV-2 infection. Antibodies against SARS-CoV-2 S and N proteins were rare in all populations except in Gabon and Senegal where N specific antibodies were prevalent. However, these antibodies failed to neutralize the virus either in vitro or in vivo. Overall, this study indicates that cross-reactive immunity against SARS-CoV-2 N protein was present in Africa prior to the pandemic. However, this pre-existing humoral immunity does not impact viral fitness in rodents suggesting that other human immune defense mechanisms could be involved. In Africa, seroprevalence studies using the N protein are over-estimating SARS-CoV-2 circulation.
    Keywords Medicine ; R ; Science ; Q
    Language English
    Publishing date 2022-07-01T00:00:00Z
    Publisher Nature Portfolio
    Document type Article ; Online
    Database BASE - Bielefeld Academic Search Engine (life sciences selection)

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