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  1. Article ; Online: Comparison of bacteriological culture method and multiplex real-time PCR for detection of mastitis.

    Kahya Demirbilek, Serpil / Yıldız, Merve / Akkoç, Ahmet / Mutlu, Ayşe Meriç / Ardıçlı, Özge / Aner, Havva

    Research in veterinary science

    2024  Volume 172, Page(s) 105237

    Abstract: This study includes the evaluation of multiplex real-time PCR (rPCR) kit, which was developed to provide rapid diagnosis of mastitis infections, by working with milk samples of 2 different sources of mastitis and comparing the results with the classical ... ...

    Abstract This study includes the evaluation of multiplex real-time PCR (rPCR) kit, which was developed to provide rapid diagnosis of mastitis infections, by working with milk samples of 2 different sources of mastitis and comparing the results with the classical bacteriological culture method (BC). A total of 273 bacteria were isolated in 226 samples (47.88%) out of 472 samples by BC. These were 139 (50.91%) Staphylococcus spp., 61 (22.34%) Streptococcus spp., 15 (5.49%) E. coli, 8 (2.93%) Enterococcus spp., 50 (18.31%) other bacteria. When we look at the multiplex rPCR results; 1052 positive were obtained for the gene regions of 14 different bacteria, 1 yeast, and 1 β-lactamase gene examined in 472 samples. While no searched gene region was found by rPCR in 78 (16.5%) of the 472 samples studied, at least 1 gene was detected in 394 (83.5%) samples. These 1052 positive samples by rPCR were; 263 (28.43%) Staphylococcus spp., 51 (5.51%) S. aureus, 57 (6.16%) Enterococcus spp., 49 (5.29%) C. bovis, 16 (1.73%) S. dysgalactiae, 84 (9.08%) S. agalactiae, 71 (7.67%) S. uberis, 73 (7.89%) E. coli, 14 (1.51%) Prototheca spp., 39 (4.21%) T. pyogenes/P. indolicus, 5 (0.54%) S. marcescens, 15 (1.62%) K. oxytoca/pneumonia, 117 (12.64%) Mycoplasma spp., 31 (3.35%) M. bovis, 40 (4.32%) yeast, and 127 samples (26.90%) were β-lactamase positive. When the antibiotic resistance of the isolates was evaluated, 78 (31.96%) tetracycline, 72 (29.5%) penicillin, and 60 (24.59%) clindamycin resistance were observed predominantly in Gram-positive isolates, while 6 (23.07%) tigecycline, 6 (23.07%) netilmicin, 6 (23.07%) pipercillin resistance was found in gram-negative isolates. While a bacteria and/or yeast gene was found by rPCR in 187 of 246 (76.01%) samples with no bacterial growth, a bacterium was isolated with BC in only 20 (8.84%) samples whose gene region was not found by rPCR. As a result, the multiplex rPCR system used in the diagnosis of mastitis has been found to be quite reliable as it can detect a large number of bacteria in a very short time compared to classical methods. Therefore, we advise the use of rPCR and/or culture for confirmation of clinical signs in mastitis and at routine mastitis surveillance.
    MeSH term(s) Mastitis, Bovine/microbiology ; Mastitis, Bovine/diagnosis ; Female ; Animals ; Real-Time Polymerase Chain Reaction/veterinary ; Real-Time Polymerase Chain Reaction/methods ; Cattle ; Multiplex Polymerase Chain Reaction/veterinary ; Multiplex Polymerase Chain Reaction/methods ; Bacteriological Techniques/methods ; Bacteriological Techniques/veterinary ; Milk/microbiology ; Bacteria/isolation & purification ; Bacteria/genetics ; Bacteria/classification
    Language English
    Publishing date 2024-03-22
    Publishing country England
    Document type Journal Article ; Comparative Study
    ZDB-ID 840961-4
    ISSN 1532-2661 ; 0034-5288
    ISSN (online) 1532-2661
    ISSN 0034-5288
    DOI 10.1016/j.rvsc.2024.105237
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  2. Article ; Online: A potential immunological silver bullet for COVID-19: The trivalent chimpanzee adenoviral serotype-68 vector (Tri:ChAd).

    Ardicli, Ozge / Azkur, Ahmet Kursat / Azkur, Dilek

    Allergy

    2022  Volume 77, Issue 8, Page(s) 2565–2567

    MeSH term(s) Animals ; COVID-19 ; Chad ; Genetic Vectors/genetics ; Humans ; Pan troglodytes ; Serogroup
    Language English
    Publishing date 2022-05-17
    Publishing country Denmark
    Document type News
    ZDB-ID 391933-x
    ISSN 1398-9995 ; 0105-4538
    ISSN (online) 1398-9995
    ISSN 0105-4538
    DOI 10.1111/all.15333
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  3. Article ; Online: Recent advances in the epithelial barrier theory.

    Pat, Yagiz / Yazici, Duygu / D'Avino, Paolo / Li, Manru / Ardicli, Sena / Ardicli, Ozge / Mitamura, Yasutaka / Akdis, Mübeccel / Dhir, Raja / Nadeau, Kari / Agache, Ioana / Ogulur, Ismail / Akdis, Cezmi A

    International immunology

    2024  Volume 36, Issue 5, Page(s) 211–222

    Abstract: The epithelial barrier theory links the recent rise in chronic non-communicable diseases, notably autoimmune and allergic disorders, to environmental agents disrupting the epithelial barrier. Global pollution and environmental toxic agent exposure have ... ...

    Abstract The epithelial barrier theory links the recent rise in chronic non-communicable diseases, notably autoimmune and allergic disorders, to environmental agents disrupting the epithelial barrier. Global pollution and environmental toxic agent exposure have worsened over six decades because of uncontrolled growth, modernization, and industrialization, affecting human health. Introducing new chemicals without any reasonable control of their health effects through these years has led to documented adverse effects, especially on the skin and mucosal epithelial barriers. These substances, such as particulate matter, detergents, surfactants, food emulsifiers, micro- and nano-plastics, diesel exhaust, cigarette smoke, and ozone, have been shown to compromise the epithelial barrier integrity. This disruption is linked to the opening of the tight-junction barriers, inflammation, cell death, oxidative stress, and metabolic regulation. Consideration must be given to the interplay of toxic substances, underlying inflammatory diseases, and medications, especially in affected tissues. This review article discusses the detrimental effect of environmental barrier-damaging compounds on human health and involves cellular and molecular mechanisms.
    MeSH term(s) Humans ; Particulate Matter/adverse effects ; Vehicle Emissions/toxicity ; Tight Junctions ; Allergens ; Oxidative Stress ; Epithelial Cells
    Chemical Substances Particulate Matter ; Vehicle Emissions ; Allergens
    Language English
    Publishing date 2024-01-16
    Publishing country England
    Document type Review ; Journal Article
    ZDB-ID 1013745-2
    ISSN 1460-2377 ; 0953-8178
    ISSN (online) 1460-2377
    ISSN 0953-8178
    DOI 10.1093/intimm/dxae002
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  4. Article ; Online: Dysregulation of the epithelial barrier by environmental and other exogenous factors.

    Mitamura, Yasutaka / Ogulur, Ismail / Pat, Yagiz / Rinaldi, Arturo O / Ardicli, Ozge / Cevhertas, Lacin / Brüggen, Marie-Charlotte / Traidl-Hoffmann, Claudia / Akdis, Mubeccel / Akdis, Cezmi A

    Contact dermatitis

    2021  Volume 85, Issue 6, Page(s) 615–626

    Abstract: The "epithelial barrier hypothesis" proposes that the exposure to various epithelial barrier-damaging agents linked to industrialization and urbanization underlies the increase in allergic diseases. The epithelial barrier constitutes the first line of ... ...

    Abstract The "epithelial barrier hypothesis" proposes that the exposure to various epithelial barrier-damaging agents linked to industrialization and urbanization underlies the increase in allergic diseases. The epithelial barrier constitutes the first line of physical, chemical, and immunological defense against environmental factors. Recent reports have shown that industrial products disrupt the epithelial barriers. Innate and adaptive immune responses play an important role in epithelial barrier damage. In addition, recent studies suggest that epithelial barrier dysfunction plays an essential role in the pathogenesis of the atopic march by allergen sensitization through the transcutaneous route. It is evident that external factors interact with the immune system, triggering a cascade of complex reactions that damage the epithelial barrier. Epigenetic and microbiome changes modulate the integrity of the epithelial barrier. Robust and simple measurements of the skin barrier dysfunction at the point-of-care are of significant value as a biomarker, as recently reported using electrical impedance spectroscopy to directly measure barrier defects. Understanding epithelial barrier dysfunction and its mechanism is key to developing novel strategies for the prevention and treatment of allergic diseases. The aim of this review is to summarize recent studies on the pathophysiological mechanisms triggered by environmental factors that contribute to the dysregulation of epithelial barrier function.
    MeSH term(s) Adaptive Immunity ; Allergens/adverse effects ; Dermatitis, Atopic/etiology ; Dermatitis, Atopic/genetics ; Dermatitis, Atopic/immunology ; Dermatitis, Atopic/physiopathology ; Environmental Exposure ; Epigenesis, Genetic ; Epithelium/anatomy & histology ; Epithelium/physiopathology ; Humans ; Immunity, Innate ; Microbiota/physiology ; Permeability
    Chemical Substances Allergens
    Language English
    Publishing date 2021-09-17
    Publishing country England
    Document type Journal Article ; Review
    ZDB-ID 193121-0
    ISSN 1600-0536 ; 0105-1873
    ISSN (online) 1600-0536
    ISSN 0105-1873
    DOI 10.1111/cod.13959
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  5. Article ; Online: Exposure to avian coronavirus vaccines is associated with increased levels of SARS-CoV-2-cross-reactive antibodies.

    Ardicli, Ozge / Carli, K Tayfun / Satitsuksanoa, Pattraporn / Dreher, Anita / Cusini, Alexia / Hutter, Sandra / Mirer, David / Rückert, Beate / Jonsdottir, Hulda R / Weber, Benjamin / Cervia, Carlo / Akdis, Mubeccel / Boyman, Onur / Eggel, Alexander / Brüggen, Marie-Charlotte / Akdis, Cezmi A / van de Veen, Willem

    Allergy

    2022  Volume 77, Issue 12, Page(s) 3648–3662

    Abstract: Background: Although avian coronavirus infectious bronchitis virus (IBV) and SARS-CoV-2 belong to different genera of the Coronaviridae family, exposure to IBV may result in the development of cross-reactive antibodies to SARS-CoV-2 due to homologous ... ...

    Abstract Background: Although avian coronavirus infectious bronchitis virus (IBV) and SARS-CoV-2 belong to different genera of the Coronaviridae family, exposure to IBV may result in the development of cross-reactive antibodies to SARS-CoV-2 due to homologous epitopes. We aimed to investigate whether antibody responses to IBV cross-react with SARS-CoV-2 in poultry farm personnel who are occupationally exposed to aerosolized IBV vaccines.
    Methods: We analyzed sera from poultry farm personnel, COVID-19 patients, and pre-pandemic controls. IgG levels against the SARS-CoV-2 antigens S1, RBD, S2, and N and peptides corresponding to the SARS-CoV-2 ORF3a, N, and S proteins as well as whole virus antigens of the four major S1-genotypes 4/91, IS/1494/06, M41, and D274 of IBV were investigated by in-house ELISAs. Moreover, live-virus neutralization test (VNT) was performed.
    Results: A subgroup of poultry farm personnel showed elevated levels of specific IgG for all tested SARS-CoV-2 antigens compared with pre-pandemic controls. Moreover, poultry farm personnel, COVID-19 patients, and pre-pandemic controls showed specific IgG antibodies against IBV strains. These antibody titers were higher in long-term vaccine implementers. We observed a strong correlation between IBV-specific IgG and SARS-CoV-2 S1-, RBD-, S2-, and N-specific IgG in poultry farm personnel compared with pre-pandemic controls and COVID-19 patients. However, no neutralization was observed for these cross-reactive antibodies from poultry farm personnel using the VNT.
    Conclusion: We report here for the first time the detection of cross-reactive IgG antibodies against SARS-CoV-2 antigens in humans exposed to IBV vaccines. These findings may be useful for further studies on the adaptive immunity against COVID-19.
    MeSH term(s) Humans ; Antibodies, Viral/immunology ; COVID-19/prevention & control ; Immunoglobulin G ; Infectious bronchitis virus/immunology ; SARS-CoV-2 ; Spike Glycoprotein, Coronavirus ; Cross Reactions ; Poultry ; Animals ; Farmers
    Chemical Substances Antibodies, Viral ; Immunoglobulin G ; Spike Glycoprotein, Coronavirus ; spike protein, SARS-CoV-2
    Language English
    Publishing date 2022-07-23
    Publishing country Denmark
    Document type Journal Article ; Research Support, Non-U.S. Gov't
    ZDB-ID 391933-x
    ISSN 1398-9995 ; 0105-4538
    ISSN (online) 1398-9995
    ISSN 0105-4538
    DOI 10.1111/all.15441
    Database MEDical Literature Analysis and Retrieval System OnLINE

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  6. Article ; Online: Exposure to avian coronavirus vaccines is associated with increased levels of SARS‐CoV‐2‐cross‐reactive antibodies

    Ardicli, Ozge / Carli, K. Tayfun / Satitsuksanoa, Pattraporn / Dreher, Anita / Cusini, Alexia / Hutter, Sandra / Mirer, David / Rückert, Beate / Jonsdottir, Hulda R. / Weber, Benjamin / Cervia, Carlo / Akdis, Mubeccel / Boyman, Onur / Eggel, Alexander / Brüggen, Marie‐Charlotte / Akdis, Cezmi A. / van de Veen, Willem

    Allergy 2022 Dec., v. 77, no. 12, p. 3648-3662

    2022  , Page(s) 3648–3662

    Abstract: BACKGROUND: Although avian coronavirus infectious bronchitis virus (IBV) and SARS‐CoV‐2 belong to different genera of the Coronaviridae family, exposure to IBV may result in the development of cross‐reactive antibodies to SARS‐CoV‐2 due to homologous ... ...

    Abstract BACKGROUND: Although avian coronavirus infectious bronchitis virus (IBV) and SARS‐CoV‐2 belong to different genera of the Coronaviridae family, exposure to IBV may result in the development of cross‐reactive antibodies to SARS‐CoV‐2 due to homologous epitopes. We aimed to investigate whether antibody responses to IBV cross‐react with SARS‐CoV‐2 in poultry farm personnel who are occupationally exposed to aerosolized IBV vaccines. METHODS: We analyzed sera from poultry farm personnel, COVID‐19 patients, and pre‐pandemic controls. IgG levels against the SARS‐CoV‐2 antigens S1, RBD, S2, and N and peptides corresponding to the SARS‐CoV‐2 ORF3a, N, and S proteins as well as whole virus antigens of the four major S1‐genotypes 4/91, IS/1494/06, M41, and D274 of IBV were investigated by in‐house ELISAs. Moreover, live‐virus neutralization test (VNT) was performed. RESULTS: A subgroup of poultry farm personnel showed elevated levels of specific IgG for all tested SARS‐CoV‐2 antigens compared with pre‐pandemic controls. Moreover, poultry farm personnel, COVID‐19 patients, and pre‐pandemic controls showed specific IgG antibodies against IBV strains. These antibody titers were higher in long‐term vaccine implementers. We observed a strong correlation between IBV‐specific IgG and SARS‐CoV‐2 S1‐, RBD‐, S2‐, and N‐specific IgG in poultry farm personnel compared with pre‐pandemic controls and COVID‐19 patients. However, no neutralization was observed for these cross‐reactive antibodies from poultry farm personnel using the VNT. CONCLUSION: We report here for the first time the detection of cross‐reactive IgG antibodies against SARS‐CoV‐2 antigens in humans exposed to IBV vaccines. These findings may be useful for further studies on the adaptive immunity against COVID‐19.
    Keywords COVID-19 infection ; Infectious bronchitis virus ; Severe acute respiratory syndrome coronavirus 2 ; adaptive immunity ; antibodies ; epitopes ; farms ; human resources ; hypersensitivity ; neutralization ; neutralization tests ; peptides ; poultry ; vaccines ; viruses
    Language English
    Dates of publication 2022-12
    Size p. 3648-3662.
    Publishing place John Wiley & Sons, Inc
    Document type Article ; Online
    Note JOURNAL ARTICLE
    ZDB-ID 391933-x
    ISSN 1398-9995 ; 0105-4538
    ISSN (online) 1398-9995
    ISSN 0105-4538
    DOI 10.1111/all.15441
    Database NAL-Catalogue (AGRICOLA)

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  7. Article ; Online: Advances and highlights in biomarkers of allergic diseases.

    Ogulur, Ismail / Pat, Yagiz / Ardicli, Ozge / Barletta, Elena / Cevhertas, Lacin / Fernandez-Santamaria, Ruben / Huang, Mengting / Bel Imam, Manal / Koch, Jana / Ma, Siyuan / Maurer, Debbie J / Mitamura, Yasutaka / Peng, Yaqi / Radzikowska, Urszula / Rinaldi, Arturo O / Rodriguez-Coira, Juan / Satitsuksanoa, Pattraporn / Schneider, Stephan R / Wallimann, Alexandra /
    Zhakparov, Damir / Ziadlou, Reihane / Brüggen, Marie-Charlotte / van de Veen, Willem / Sokolowska, Milena / Baerenfaller, Katja / Zhang, Luo / Akdis, Mubeccel / Akdis, Cezmi A

    Allergy

    2021  Volume 76, Issue 12, Page(s) 3659–3686

    Abstract: During the past years, there has been a global outbreak of allergic diseases, presenting a considerable medical and socioeconomical burden. A large fraction of allergic diseases is characterized by a type 2 immune response involving Th2 cells, type 2 ... ...

    Abstract During the past years, there has been a global outbreak of allergic diseases, presenting a considerable medical and socioeconomical burden. A large fraction of allergic diseases is characterized by a type 2 immune response involving Th2 cells, type 2 innate lymphoid cells, eosinophils, mast cells, and M2 macrophages. Biomarkers are valuable parameters for precision medicine as they provide information on the disease endotypes, clusters, precision diagnoses, identification of therapeutic targets, and monitoring of treatment efficacies. The availability of powerful omics technologies, together with integrated data analysis and network-based approaches can help the identification of clinically useful biomarkers. These biomarkers need to be accurately quantified using robust and reproducible methods, such as reliable and point-of-care systems. Ideally, samples should be collected using quick, cost-efficient and noninvasive methods. In recent years, a plethora of research has been directed toward finding novel biomarkers of allergic diseases. Promising biomarkers of type 2 allergic diseases include sputum eosinophils, serum periostin and exhaled nitric oxide. Several other biomarkers, such as pro-inflammatory mediators, miRNAs, eicosanoid molecules, epithelial barrier integrity, and microbiota changes are useful for diagnosis and monitoring of allergic diseases and can be quantified in serum, body fluids and exhaled air. Herein, we review recent studies on biomarkers for the diagnosis and treatment of asthma, chronic urticaria, atopic dermatitis, allergic rhinitis, chronic rhinosinusitis, food allergies, anaphylaxis, drug hypersensitivity and allergen immunotherapy. In addition, we discuss COVID-19 and allergic diseases within the perspective of biomarkers and recommendations on the management of allergic and asthmatic patients during the COVID-19 pandemic.
    MeSH term(s) Biomarkers ; COVID-19 ; Humans ; Hypersensitivity/diagnosis ; Immunity, Innate ; Lymphocytes ; Pandemics ; Rhinitis, Allergic ; SARS-CoV-2
    Chemical Substances Biomarkers
    Language English
    Publishing date 2021-09-27
    Publishing country Denmark
    Document type Journal Article ; Review
    ZDB-ID 391933-x
    ISSN 1398-9995 ; 0105-4538
    ISSN (online) 1398-9995
    ISSN 0105-4538
    DOI 10.1111/all.15089
    Database MEDical Literature Analysis and Retrieval System OnLINE

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